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[docs] Clarify coverage-dependent surface species docs
Co-authored-by: Ray Speth <speth@mit.edu>
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@ -265,7 +265,7 @@ entropy, and heat capacity of each species may depend on its coverage and the
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coverage of other species in the phase.
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Full details are :ct:`described here <CoverageDependentSurfPhase>`.
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The majority of coverage dependency parameters are provided in the species entry as
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:ref:`described here <sec-yaml-coverage-dependent-surface-species>`.
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:ref:`described here <sec-yaml-species-coverage>`.
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Additional fields:
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@ -36,6 +36,12 @@ The fields of a ``species`` entry are:
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Mapping containing the species transport model specification and
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parameters. See :ref:`sec-yaml-species-transport`.
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``coverage-dependencies``
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Mapping where keys are the names of other species whose coverages affects
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thermodynamic properties of this species. The map values are the dependency entries
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including ``model`` and model-specific parameters as :ref:`described here
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<sec-yaml-species-coverage>`.
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``sites``
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The number of sites occupied by a surface or edge species. Default is 1.
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@ -135,6 +141,7 @@ Example::
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2.486903333E-06, -9.705954110E-11, 1.437538881E-15, 4.938707040E+06,
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-1.672099740E+03]
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.. _sec-yaml-shomate:
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Shomate polynomials
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@ -205,6 +212,7 @@ Example::
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s0: -3.02 cal/mol/K
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cp0: 5.95 cal/mol/K
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.. _sec-yaml-piecewise-gibbs:
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Piecewise Gibbs
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@ -423,6 +431,7 @@ Additional fields:
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``data``
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Vector of 4 coefficients for a cubic polynomial in temperature
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.. _sec-yaml-eos-peng-robinson:
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Peng-Robinson
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@ -481,98 +490,6 @@ Additional fields:
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coefficients for binary interactions between the two species.
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.. _sec-yaml-coverage-dependent-surface-species:
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Coverage-dependent Surface
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--------------------------
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A model where species thermodynamic properties are calculated as a function
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coverage as :ct:`described here <CoverageDependentSurfPhase>`.
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Additional fields:
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``coverage-dependencies``
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Mapping where keys are the name of species whose coverage affects
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thermodynamic properties of the node-owner species. The map values are
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the dependency entries including ``model``, model-specific parameters,
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``heat-capacity-a``, and ``heat-capacity-b`` that correspond
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to an individual dependency between the node-owner species and keyed species.
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``model``
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Dependency model for coverage-dependent enthalpy or entropy. It should be
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one of the four: ``linear``, ``polynomial``, ``piecewise-linear``
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or ``interpolative``. The ``model`` and model-specific parameters are grouped
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as follow.
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``linear``: ``enthalpy``, ``entropy``
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``polynomial``: ``enthalpy-coefficients``, ``entropy-coefficients``
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``piecewise-linear``: ``enthalpy-low``, ``enthalpy-high``, ``enthalpy-change``,
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``entropy-low``, ``entropy-high``, ``entropy-change``
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``interpolative``: ``enthalpy-coverages``, ``enthalpies``, ``entropy-coverages``,
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``entropies``
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``enthalpy`` or ``entropy``
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Slope of the coverage-dependent enthalpy or entropy used in the ``linear``
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model.
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``enthalpy-coefficients`` or ``entropy-coefficients``
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Array of polynomial coefficients in order of 1st, 2nd, 3rd, and 4th-order
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used in coverage-dependent enthalpy or entropy calculation with the ``polynomial``
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model.
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``enthalpy-low`` or ``entropy-low``
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Slope of the coverage-dependent enthalpy or entropy for the lower coverage
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region used in the ``piecewise-linear`` model.
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``enthalpy-high`` or ``entropy-high``
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Slope of the coverage-dependent enthalpy or entropy for the higher coverage
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region used in the ``piecewise-linear`` model.
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``enthalpy-change`` or ``entropy-change``
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Coverage that separates the lower and higher coverage regions of the
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coverage-dependent enthalpy or entropy used in the ``piecewise-linear`` model.
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``enthalpy-coverages`` or ``entropy-coverages``
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Array of discrete coverage values used in coverage-dependent enthalpy
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or entropy used in the ``interpolative`` model.
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``enthalpies`` or ``entropies``
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Array of discrete enthalpy or entropy values corresponding to the coverages
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in ``enthalpy-coverages`` or ``entropy-coverages``, respectively, used in the
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``interpolative`` model.
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``heat-capacity-a`` or ``heat-capacity-b``
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Coefficient :math:`c^{(a)}` or :math:`c^{(b)}` used in the coverage-dependent
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``heat capacity`` model.
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Example::
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coverage-dependencies:
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OC_Pt: {model: linear,
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units: {energy: eV, quantity: molec},
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enthalpy: 0.48, entropy: -0.031}
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C_Pt: {model: polynomial,
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units: {energy: J, quantity: mol},
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enthalpy-coefficients: [0.0, -3.86e4, 0.0, 4.2e5],
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entropy-coefficients: [0.8e3, 0.0, -1.26e4, 0.0]}
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CO2_Pt: {model: piecewise-linear,
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units: {energy: kJ, quantity: mol},
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enthalpy-low: 0.5e2, enthalpy-high: 1.0e2,
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enthalpy-change: 0.4,
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entropy-low: 0.1e2, entropy-high: -0.2e2,
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entropy-change: 0.4,
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heat-capacity-a: 0.02e-1, heat-capacity-b: -0.156e-1}
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O_Pt: {model: interpolative,
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units: {energy: kcal, quantity: mol},
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enthalpy-coverages: [0.0, 0.2, 0.4, 0.7, 0.9, 1.0],
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enthalpies: [0.0, 0.5, 1.0, 2.7, 3.5, 4.0],
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entropy-coverages: [0.0, 0.5, 1.0],
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entropies: [0.0, -0.7, -2.0]}
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.. _sec-yaml-species-transport:
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Species transport models
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@ -630,3 +547,152 @@ Example::
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diameter: 3.458
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polarizability: 1.6
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rotational-relaxation: 3.8
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.. _sec-yaml-species-coverage:
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Species coverage dependencies
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=============================
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The coverage-dependent surface species formulation calculates coverage-dependent
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correction factors to the ideal surface phase properties. Used in conjunction with the
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:ref:`coverage-dependent-surface <sec-yaml-coverage-dependent-surface>` phase model.
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Full details are :ct:`described here <CoverageDependentSurfPhase>`.
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Fields of a species ``coverage-dependencies`` map entry used by all models are:
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``model``
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String specifying the model to be used. Required. Supported model strings are:
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- ``linear`` (:ref:`details <sec-yaml-species-coverage-linear>`)
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- ``polynomial`` (:ref:`details <sec-yaml-species-coverage-polynomial>`)
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- ``piecewise-linear`` (:ref:`details <sec-yaml-species-coverage-piecewise-linear>`)
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- ``interpolative`` (:ref:`details <sec-yaml-species-coverage-interpolative>`)
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.. _sec-yaml-species-coverage-linear:
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Linear dependency model
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-----------------------
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``enthalpy``
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Slope of the coverage-dependent enthalpy.
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``entropy``
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Slope of the coverage-dependent entropy.
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Example::
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coverage-dependencies:
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O_Pt:
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model: linear
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units: {energy: eV, quantity: molec}
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enthalpy: 0.48
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entropy: -0.031
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# + other entries (optional)
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.. _sec-yaml-species-coverage-polynomial:
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Polynomial dependency model
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---------------------------
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``enthalpy-coefficients``
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Array of polynomial coefficients in order of 1st, 2nd, 3rd, and
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4th-order used in coverage-dependent enthalpy calculation.
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``entropy-coefficients``
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Array of polynomial coefficients in order of 1st, 2nd, 3rd, and
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4th-order used in coverage-dependent entropy calculation.
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Example::
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coverage-dependencies:
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OC_Pt:
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model: polynomial
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units: {energy: J, quantity: mol}
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enthalpy-coefficients: [0.0, -3.86e4, 0.0, 4.2e5]
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entropy-coefficients: [0.8e3, 0.0, -1.26e4, 0.0]
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# + other entries (optional)
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.. _sec-yaml-species-coverage-piecewise-linear:
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Piecewise-linear dependency model
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---------------------------------
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``enthalpy-low``
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Slope of the coverage-dependent enthalpy for the lower coverage region.
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``entropy-low``
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Slope of the coverage-dependent entropy for the lower coverage region.
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``enthalpy-high``
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Slope of the coverage-dependent enthalpy for the higher coverage region.
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``entropy-high``
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Slope of the coverage-dependent entropy for the higher coverage region.
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``enthalpy-change``
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Coverage that separates the lower and higher coverage regions of the
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coverage-dependent enthalpy.
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``entropy-change``
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Coverage that separates the lower and higher coverage regions of the
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coverage-dependent entropy.
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``heat-capacity-a``
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Coefficient :math:`c^{(a)}` used in the
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:ct:`coverage-dependent heat capacity <HeatCapacityDependency>` model.
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``heat-capacity-b``
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Coefficient :math:`c^{(b)}` used in the
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:ct:`coverage-dependent heat capacity <HeatCapacityDependency>` model.
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Example::
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coverage-dependencies:
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CO2_Pt:
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model: piecewise-linear
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units: {energy: kJ, quantity: mol}
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enthalpy-low: 0.5e2
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enthalpy-high: 1.0e2
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enthalpy-change: 0.4
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entropy-low: 0.1e2
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entropy-high: -0.2e2
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entropy-change: 0.4
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heat-capacity-a: 0.02e-1
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heat-capacity-b: -0.156e-1
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# + other entries (optional)
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.. _sec-yaml-species-coverage-interpolative:
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Interpolative dependency model
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------------------------------
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``enthalpy-coverages``
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Array of discrete coverage values used in coverage-dependent enthalpy.
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``entropy-coverages``
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Array of discrete coverage values used in coverage-dependent entropy.
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``enthalpies``
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Array of discrete enthalpy values corresponding to the
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coverages in ``enthalpy-coverages``.
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``entropies``
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Array of discrete entropy values corresponding to the
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coverages in ``entropy-coverages``.
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Example::
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coverage-dependencies:
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C_Pt:
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model: interpolative
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units: {energy: kcal, quantity: mol}
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enthalpy-coverages: [0.0, 0.2, 0.4, 0.7, 0.9, 1.0]
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entropy-coverages: [0.0, 0.5, 1.0]
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enthalpies: [0.0, 0.5, 1.0, 2.7, 3.5, 4.0]
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entropies: [0.0, -0.7, -2.0]
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# + other entries (optional)
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