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openbabel/scripts/python/setup.py

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#!/usr/bin/env python
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from setuptools import setup, Extension
import os,sys,shutil
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import subprocess
import sys
about = """The Open Babel package provides a Python wrapper
Merged revisions 3091-3094,3097-3100 via svnmerge from https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/branches/openbabel-2-2-x ........ r3091 | ghutchis | 2009-06-22 00:24:46 +0200 (Mon, 22 Jun 2009) | 5 lines * src/chains.cpp (OpenBabel): Fix for PR#2691618. When writing hydrogen atoms without chain names, make sure there are never spaces. ........ r3092 | ghutchis | 2009-06-22 15:24:47 +0200 (Mon, 22 Jun 2009) | 4 lines * src/generic.cpp: Fix unit cell when setting possibly zero translation vectors ( e.g. PR#1961604). ........ r3093 | timvdm | 2009-06-22 22:54:24 +0200 (Mon, 22 Jun 2009) | 2 lines Fix phmodel.txt rules to match both free & polymerized amino acids. ........ r3094 | ghutchis | 2009-06-24 00:06:49 +0200 (Wed, 24 Jun 2009) | 2 lines Updated from Tim's recent change. ........ r3097 | ghutchis | 2009-06-24 21:26:55 +0200 (Wed, 24 Jun 2009) | 2 lines Added Craig's changes for randomized SMILES order. ........ r3098 | ghutchis | 2009-06-25 05:36:47 +0200 (Thu, 25 Jun 2009) | 4 lines * src/generic.cpp (OBUnitCell): Make sure to set the space group to P1 by default and after FillUnitCell. ........ r3099 | ghutchis | 2009-06-25 05:36:56 +0200 (Thu, 25 Jun 2009) | 6 lines * src/formats/mopacformat.cpp: Read and write translation vectors, if available. * src/formats/gaussformat.cpp: Ditto ........ r3100 | ghutchis | 2009-06-25 20:14:18 +0200 (Thu, 25 Jun 2009) | 2 lines Fix PR#2784880 -- compiling with OPENBABEL_INSTALL set fails (e.g., on MacPorts). ........
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to the Open Babel C++ chemistry library. Open Babel is a chemical
toolbox designed to speak the many languages of chemical data. It's an
open, collaborative project allowing anyone to search, convert,
analyze, or store data from molecular modeling, chemistry, solid-state
materials, biochemistry, or related areas. It provides a broad base of
chemical functionality for custom development.
"""
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version = "1.8"
try:
subprocess.check_output("pkg-config --exists openbabel-2.0".split())
except:
print ("pkg-config could not find an openbabel instal. Please install openbabel and rerun setup.py.")
sys.exit(1)
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babel_version = subprocess.Popen("pkg-config --modversion openbabel-2.0".split(),
stdout=subprocess.PIPE).stdout.readline().decode("utf-8")
include_dirs = subprocess.Popen("pkg-config --variable=pkgincludedir openbabel-2.0".split(),
stdout=subprocess.PIPE).stdout.readline().decode("utf-8").split()
lib_dirs = subprocess.Popen("pkg-config --variable=libdir openbabel-2.0".split(),
stdout=subprocess.PIPE).stdout.readline().decode("utf-8").split()
#Code should be added here to ensure these directories exist, and that this version of babel is compatible
#with this python package.
swig_opts = ["-c++", "-small", "-O", "-templatereduce", "-naturalvar"]
swig_opts += ["-I%s" % i for i in include_dirs]
obExtension = Extension('_openbabel',
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["openbabel-python.i"],
include_dirs=include_dirs,
library_dirs=lib_dirs,
swig_opts=swig_opts,
libraries=["openbabel"]
)
setup(name='openbabel',
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zip_safe=True,
version=version,
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author='Noel O\'Boyle',
author_email='openbabel-scripting@lists.sourceforge.net',
Merged revisions 3091-3094,3097-3100 via svnmerge from https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/branches/openbabel-2-2-x ........ r3091 | ghutchis | 2009-06-22 00:24:46 +0200 (Mon, 22 Jun 2009) | 5 lines * src/chains.cpp (OpenBabel): Fix for PR#2691618. When writing hydrogen atoms without chain names, make sure there are never spaces. ........ r3092 | ghutchis | 2009-06-22 15:24:47 +0200 (Mon, 22 Jun 2009) | 4 lines * src/generic.cpp: Fix unit cell when setting possibly zero translation vectors ( e.g. PR#1961604). ........ r3093 | timvdm | 2009-06-22 22:54:24 +0200 (Mon, 22 Jun 2009) | 2 lines Fix phmodel.txt rules to match both free & polymerized amino acids. ........ r3094 | ghutchis | 2009-06-24 00:06:49 +0200 (Wed, 24 Jun 2009) | 2 lines Updated from Tim's recent change. ........ r3097 | ghutchis | 2009-06-24 21:26:55 +0200 (Wed, 24 Jun 2009) | 2 lines Added Craig's changes for randomized SMILES order. ........ r3098 | ghutchis | 2009-06-25 05:36:47 +0200 (Thu, 25 Jun 2009) | 4 lines * src/generic.cpp (OBUnitCell): Make sure to set the space group to P1 by default and after FillUnitCell. ........ r3099 | ghutchis | 2009-06-25 05:36:56 +0200 (Thu, 25 Jun 2009) | 6 lines * src/formats/mopacformat.cpp: Read and write translation vectors, if available. * src/formats/gaussformat.cpp: Ditto ........ r3100 | ghutchis | 2009-06-25 20:14:18 +0200 (Thu, 25 Jun 2009) | 2 lines Fix PR#2784880 -- compiling with OPENBABEL_INSTALL set fails (e.g., on MacPorts). ........
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url='http://openbabel.org/',
license='http://www.gnu.org/copyleft/gpl.html',
py_modules=['openbabel','pybel'],
ext_modules=[obExtension],
description = 'openbabel: Python interface to the Open Babel chemistry library',
classifiers=[
'Development Status :: 5 - Production/Stable',
'Environment :: Console',
'Environment :: Other Environment',
'Intended Audience :: Education',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: GNU General Public License (GPL)',
'Natural Language :: English',
'Operating System :: MacOS :: MacOS X',
'Operating System :: Microsoft :: Windows',
'Operating System :: OS Independent',
'Operating System :: POSIX',
'Operating System :: POSIX :: Linux',
'Operating System :: Unix',
'Programming Language :: C++',
'Programming Language :: Python',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Topic :: Scientific/Engineering :: Chemistry',
'Topic :: Software Development :: Libraries',
],
long_description = about,
)