From 3e71f5a35b37b3683506ae6fed4ece43b58e3abb Mon Sep 17 00:00:00 2001 From: Geoffrey Hutchison Date: Sun, 10 Oct 2010 01:24:39 +0000 Subject: [PATCH] Update website to openbabel.org (long overdue). --- data/aromatic.h | 2 +- data/atomtyp.h | 2 +- data/bin2hex.pl | 4 ++-- data/bondtyp.h | 2 +- data/element.h | 2 +- data/isotope.h | 2 +- data/phmodeldata.h | 2 +- data/resdata.h | 2 +- data/torlib.h | 2 +- data/types.h | 2 +- doc/OpenBabelGUI.html | 2 +- include/OB-BGL/example.cpp | 2 +- include/OB-BGL/mol_graph.h | 2 +- include/OB-BGL/verbose_visitors.h | 2 +- include/openbabel/atom.h | 2 +- include/openbabel/base.h | 2 +- include/openbabel/bitvec.h | 2 +- include/openbabel/bond.h | 2 +- include/openbabel/bondtyper.h | 2 +- include/openbabel/builder.h | 2 +- include/openbabel/canon.h | 2 +- include/openbabel/chains.h | 2 +- include/openbabel/chargemodel.h | 2 +- include/openbabel/chiral.h | 2 +- include/openbabel/data.h | 2 +- include/openbabel/depict/depict.h | 2 +- include/openbabel/depict/painter.h | 2 +- include/openbabel/depict/svgpainter.h | 2 +- include/openbabel/descriptor.h | 2 +- include/openbabel/dlhandler.h | 2 +- include/openbabel/fingerprint.h | 2 +- include/openbabel/forcefield.h | 2 +- include/openbabel/format.h | 2 +- include/openbabel/generic.h | 2 +- include/openbabel/graphsym.h | 2 +- include/openbabel/grid.h | 2 +- include/openbabel/griddata.h | 2 +- include/openbabel/groupcontrib.h | 2 +- include/openbabel/internalcoord.h | 2 +- include/openbabel/isomorphism.h | 2 +- include/openbabel/kinetics.h | 2 +- include/openbabel/lineend.h | 2 +- include/openbabel/locale.h | 2 +- include/openbabel/math/align.h | 2 +- include/openbabel/math/matrix3x3.h | 2 +- include/openbabel/math/spacegroup.h | 2 +- include/openbabel/math/transform3d.h | 2 +- include/openbabel/math/vector3.h | 2 +- include/openbabel/matrix.h | 2 +- include/openbabel/mcdlutil.h | 2 +- include/openbabel/mol.h | 2 +- include/openbabel/molchrg.h | 2 +- include/openbabel/obconversion.h | 2 +- include/openbabel/oberror.h | 2 +- include/openbabel/obiter.h | 2 +- include/openbabel/obmolecformat.h | 4 ++-- include/openbabel/obutil.h | 2 +- include/openbabel/op.h | 2 +- include/openbabel/optransform.h | 2 +- include/openbabel/parsmart.h | 2 +- include/openbabel/patty.h | 2 +- include/openbabel/phmodel.h | 2 +- include/openbabel/plugin.h | 2 +- include/openbabel/pointgroup.h | 2 +- include/openbabel/query.h | 2 +- include/openbabel/rand.h | 2 +- include/openbabel/reaction.h | 2 +- include/openbabel/residue.h | 2 +- include/openbabel/ring.h | 2 +- include/openbabel/rotamer.h | 2 +- include/openbabel/rotor.h | 2 +- include/openbabel/spectrophore.h | 2 +- include/openbabel/stereo/stereo.h | 2 +- include/openbabel/stereo/tetrahedral.h | 2 +- include/openbabel/stereo/tetranonplanar.h | 2 +- include/openbabel/stereo/tetraplanar.h | 2 +- include/openbabel/text.h | 2 +- include/openbabel/tokenst.h | 2 +- include/openbabel/typer.h | 2 +- scripts/java/README | 2 +- scripts/perl/README | 2 +- scripts/python/Examples.html | 4 ++-- scripts/python/README | 4 ++-- scripts/ruby/README | 4 ++-- src/GUI/OBGUI.cpp | 6 +++--- src/GUI/OBGUI.h | 2 +- src/GUI/optswx.cpp | 2 +- src/GUI/optswx.h | 2 +- src/GUI/stdwx.h | 2 +- src/RDKitConv.cpp | 2 +- src/atom.cpp | 2 +- src/base.cpp | 2 +- src/bitvec.cpp | 2 +- src/bond.cpp | 2 +- src/bondtyper.cpp | 2 +- src/builder.cpp | 2 +- src/canon.cpp | 2 +- src/chains.cpp | 2 +- src/chargemodel.cpp | 2 +- src/charges/gasteiger.cpp | 2 +- src/charges/mmff94.cpp | 2 +- src/charges/qeq.cpp | 2 +- src/charges/qeq.h | 2 +- src/charges/qtpie.cpp | 2 +- src/charges/qtpie.h | 2 +- src/chiral.cpp | 2 +- src/data.cpp | 2 +- src/depict/depict.cpp | 2 +- src/depict/svgpainter.cpp | 2 +- src/descriptor.cpp | 2 +- src/descriptors/cansmidescriptor.cpp | 2 +- src/descriptors/cmpdfilter.cpp | 2 +- src/descriptors/filters.cpp | 2 +- src/descriptors/groupcontrib.cpp | 2 +- src/descriptors/inchidescriptor.cpp | 2 +- src/descriptors/smartsdescriptors.cpp | 2 +- src/dlhandler_unix.cpp | 2 +- src/dlhandler_win32.cpp | 2 +- src/fingerprint.cpp | 2 +- src/fingerprints/finger2.cpp | 2 +- src/fingerprints/finger3.cpp | 2 +- src/forcefield.cpp | 2 +- src/forcefields/forcefieldgaff.cpp | 2 +- src/forcefields/forcefieldgaff.h | 2 +- src/forcefields/forcefieldghemical.cpp | 2 +- src/forcefields/forcefieldghemical.h | 2 +- src/forcefields/forcefieldmm2.cpp | 2 +- src/forcefields/forcefieldmm2.h | 2 +- src/forcefields/forcefieldmmff94.cpp | 2 +- src/forcefields/forcefieldmmff94.h | 2 +- src/forcefields/forcefielduff.cpp | 2 +- src/forcefields/forcefielduff.h | 2 +- src/format.cpp | 2 +- src/formats/APIInterface.cpp | 2 +- src/formats/MCDLformat.cpp | 2 +- src/formats/chemkinformat.cpp | 2 +- src/formats/chemtoolformat.cpp | 2 +- src/formats/cifformat.cpp | 2 +- src/formats/fastaformat.cpp | 2 +- src/formats/freefracformat.cpp | 2 +- src/formats/gausscubeformat.cpp | 2 +- src/formats/genbankformat.cpp | 2 +- src/formats/getinchi.cpp | 2 +- src/formats/mdlformat.cpp | 2 +- src/formats/mmcifformat.cpp | 4 ++-- src/formats/molreport.cpp | 4 ++-- src/formats/mpdformat.cpp | 2 +- src/formats/msiformat.cpp | 2 +- src/formats/opendxformat.cpp | 2 +- src/formats/outformat.cpp | 2 +- src/formats/reportformat.cpp | 2 +- src/formats/rsmiformat.cpp | 2 +- src/formats/rxnformat.cpp | 2 +- src/formats/thermoformat.cpp | 2 +- src/formats/titleformat.cpp | 2 +- src/formats/turbomoleformat.cpp | 2 +- src/formats/xml/cdxmlformat.cpp | 2 +- src/formats/xml/cmlformat.cpp | 2 +- src/formats/xml/pubchem.cpp | 2 +- src/formats/xyzformat.cpp | 2 +- src/generic.cpp | 4 ++-- src/graphsym.cpp | 2 +- src/grid.cpp | 2 +- src/griddata.cpp | 2 +- src/kekulize.cpp | 11 ++++++----- src/locale.cpp | 2 +- src/math/align.cpp | 2 +- src/math/matrix3x3.cpp | 2 +- src/math/spacegroup.cpp | 2 +- src/math/transform3d.cpp | 2 +- src/math/vector3.cpp | 2 +- src/matrix.cpp | 2 +- src/mcdlutil.cpp | 2 +- src/mol.cpp | 2 +- src/molchrg.cpp | 2 +- src/obconversion.cpp | 2 +- src/oberror.cpp | 2 +- src/obiter.cpp | 2 +- src/obmolecformat.cpp | 2 +- src/obutil.cpp | 2 +- src/op.cpp | 2 +- src/ops/addinindex.cpp | 2 +- src/ops/addpolarh.cpp | 2 +- src/ops/canonical.cpp | 2 +- src/ops/conformer.cpp | 2 +- src/ops/fillUC.cpp | 2 +- src/ops/forcefield.cpp | 2 +- src/ops/gen2D.cpp | 2 +- src/ops/gen3d.cpp | 2 +- src/ops/loader.cpp | 2 +- src/ops/op2d.cpp | 2 +- src/ops/optransform.cpp | 2 +- src/ops/partialcharges.cpp | 2 +- src/ops/readconformers.cpp | 2 +- src/ops/sort.cpp | 2 +- src/ops/unique.cpp | 2 +- src/ops/xout.cpp | 2 +- src/parsmart.cpp | 4 ++-- src/patty.cpp | 2 +- src/phmodel.cpp | 2 +- src/plugin.cpp | 2 +- src/pointgroup.cpp | 2 +- src/rand.cpp | 2 +- src/residue.cpp | 2 +- src/ring.cpp | 2 +- src/rotamer.cpp | 2 +- src/rotor.cpp | 2 +- src/spectrophore.cpp | 2 +- src/stereo/facade.cpp | 2 +- src/stereo/perception.cpp | 2 +- src/stereo/stereo.cpp | 2 +- src/stereo/tetrahedral.cpp | 2 +- src/stereo/tetranonplanar.cpp | 2 +- src/stereo/tetraplanar.cpp | 2 +- src/tokenst.cpp | 2 +- src/transform.cpp | 2 +- src/typer.cpp | 2 +- test/aromatest.cpp | 2 +- test/atom.cpp | 2 +- test/bond.cpp | 2 +- test/cansmi.cpp | 2 +- test/cmlreadfile.cpp | 2 +- test/conversion.cpp | 2 +- test/datatest.cpp | 2 +- test/ffgaff.cpp | 2 +- test/ffghemical.cpp | 2 +- test/ffmmff94.cpp | 2 +- test/ffuff.cpp | 2 +- test/formalcharge.cpp | 2 +- test/format.cpp | 2 +- test/formula.cpp | 2 +- test/inchiwrite.cpp | 2 +- test/internalcoord.cpp | 2 +- test/invalidsmarts.cpp | 2 +- test/invalidsmiles.cpp | 2 +- test/iterators.cpp | 2 +- test/logp_psa.cpp | 2 +- test/math.cpp | 2 +- test/mmff94validate.cpp | 2 +- test/mol.cpp | 2 +- test/phmodel.cpp | 2 +- test/residue.cpp | 2 +- test/ringtest.cpp | 2 +- test/roundtrip.cpp | 2 +- test/smartsparse.cpp | 2 +- test/smartstest.cpp | 2 +- test/smilesmatch.cpp | 2 +- test/strip.cpp | 2 +- test/unitcell.cpp | 2 +- test/zipstream.cpp | 2 +- tools/babel.cpp | 8 ++++---- tools/obabel.cpp | 8 ++++---- tools/obchiral.cpp | 6 +++--- tools/obconformer.cpp | 2 +- tools/obdoc.cpp | 2 +- tools/obenergy.cpp | 8 ++++---- tools/obfit.cpp | 6 +++--- tools/obfragment.cpp | 4 ++-- tools/obgen.cpp | 2 +- tools/obgrep.cpp | 6 +++--- tools/obminimize.cpp | 8 ++++---- tools/obmm.cpp | 2 +- tools/obprobe.cpp | 2 +- tools/obprop.cpp | 6 +++--- tools/obrotamer.cpp | 2 +- tools/obrotate.cpp | 6 +++--- tools/obseq.cpp | 2 +- tools/obspectrophore.cpp | 4 ++-- tools/obsym.cpp | 6 +++--- tools/obxyz.cpp | 2 +- .../Distribution/NSISScriptToCreateInstaller.nsi | 2 +- 271 files changed, 313 insertions(+), 312 deletions(-) diff --git a/data/aromatic.h b/data/aromatic.h index 6722b06ca..798b86acf 100644 --- a/data/aromatic.h +++ b/data/aromatic.h @@ -1,7 +1,7 @@ /*************************************************************** This file is part of the Open Babel project. This is copyright under the GNU General Public License (GPL) -For more information, see +For more information, see This file contains a binary representation of data tables used by Open Babel. It is used as a fallback if the textual diff --git a/data/atomtyp.h b/data/atomtyp.h index 31065522f..f4c90b22c 100644 --- a/data/atomtyp.h +++ b/data/atomtyp.h @@ -1,7 +1,7 @@ /*************************************************************** This file is part of the Open Babel project. This is copyright under the GNU General Public License (GPL) -For more information, see +For more information, see This file contains a binary representation of data tables used by Open Babel. It is used as a fallback if the textual diff --git a/data/bin2hex.pl b/data/bin2hex.pl index a7d6afea7..748634daa 100755 --- a/data/bin2hex.pl +++ b/data/bin2hex.pl @@ -6,7 +6,7 @@ # Some portions Copyright (c) 2002 by Geoffrey R. Hutchison # # This file is part of the Open Babel project. -# For more information, see +# For more information, see # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by @@ -51,7 +51,7 @@ if( !$debug ) { print "/***************************************************************\n"; print "This file is part of the Open Babel project.\n"; print "This is copyright under the GNU General Public License (GPL)\n"; - print "For more information, see \n\n"; + print "For more information, see \n\n"; print "This file contains a binary representation of data tables\n"; print " used by Open Babel. It is used as a fallback if the textual\n"; print " data table is not found at runtime. It is not a normal header.\n"; diff --git a/data/bondtyp.h b/data/bondtyp.h index 4dce27b07..2d5c05ca1 100644 --- a/data/bondtyp.h +++ b/data/bondtyp.h @@ -1,7 +1,7 @@ /*************************************************************** This file is part of the Open Babel project. This is copyright under the GNU General Public License (GPL) -For more information, see +For more information, see This file contains a binary representation of data tables used by Open Babel. It is used as a fallback if the textual diff --git a/data/element.h b/data/element.h index 107e259ae..da5675b15 100644 --- a/data/element.h +++ b/data/element.h @@ -1,7 +1,7 @@ /*************************************************************** This file is part of the Open Babel project. This is copyright under the GNU General Public License (GPL) -For more information, see +For more information, see This file contains a binary representation of data tables used by Open Babel. It is used as a fallback if the textual diff --git a/data/isotope.h b/data/isotope.h index 7c91a1a16..ae5125cd1 100644 --- a/data/isotope.h +++ b/data/isotope.h @@ -1,7 +1,7 @@ /*************************************************************** This file is part of the Open Babel project. This is copyright under the GNU General Public License (GPL) -For more information, see +For more information, see This file contains a binary representation of data tables used by Open Babel. It is used as a fallback if the textual diff --git a/data/phmodeldata.h b/data/phmodeldata.h index 403eb311a..90088f1e9 100644 --- a/data/phmodeldata.h +++ b/data/phmodeldata.h @@ -1,7 +1,7 @@ /*************************************************************** This file is part of the Open Babel project. This is copyright under the GNU General Public License (GPL) -For more information, see +For more information, see This file contains a binary representation of data tables used by Open Babel. It is used as a fallback if the textual diff --git a/data/resdata.h b/data/resdata.h index 4782ad42c..39f799fe5 100644 --- a/data/resdata.h +++ b/data/resdata.h @@ -1,7 +1,7 @@ /*************************************************************** This file is part of the Open Babel project. This is copyright under the GNU General Public License (GPL) -For more information, see +For more information, see This file contains a binary representation of data tables used by Open Babel. It is used as a fallback if the textual diff --git a/data/torlib.h b/data/torlib.h index af726b0b5..531c3d446 100644 --- a/data/torlib.h +++ b/data/torlib.h @@ -1,7 +1,7 @@ /*************************************************************** This file is part of the Open Babel project. This is copyright under the GNU General Public License (GPL) -For more information, see +For more information, see This file contains a binary representation of data tables used by Open Babel. It is used as a fallback if the textual diff --git a/data/types.h b/data/types.h index 39999456b..63c6311dc 100644 --- a/data/types.h +++ b/data/types.h @@ -1,7 +1,7 @@ /*************************************************************** This file is part of the Open Babel project. This is copyright under the GNU General Public License (GPL) -For more information, see +For more information, see This file contains a binary representation of data tables used by Open Babel. It is used as a fallback if the textual diff --git a/doc/OpenBabelGUI.html b/doc/OpenBabelGUI.html index 685581408..1a4824c3e 100644 --- a/doc/OpenBabelGUI.html +++ b/doc/OpenBabelGUI.html @@ -61,6 +61,6 @@ output without saving it by not selecting an output file or by checking "Output oxamide.cml which is 2D and has a large number of properties that will be seen when converting to sdf.
FourSmallMols.cml which (unsurprisingly) contains four molecules with no atom coordinates and can be used to illustrate the handling of multiple molecules. Setting the output format to smi (which is easy to see), you can convert only the second and third molecules by entering 2 and 3 in the appropriate option boxes. Or convert only molecules with C-O single bonds by entering CO in the SMARTS option box.

-

Please report bugs or suggestions for improvement to the OpenBabel website.

+

Please report bugs or suggestions for improvement to the OpenBabel website.

diff --git a/include/OB-BGL/example.cpp b/include/OB-BGL/example.cpp index 3e80394c1..6ec768329 100644 --- a/include/OB-BGL/example.cpp +++ b/include/OB-BGL/example.cpp @@ -4,7 +4,7 @@ example.cpp - example of interfacing of OpenBabel with Boost Graph Library Copyright (C) 2007 by Gerde Menche This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/OB-BGL/mol_graph.h b/include/OB-BGL/mol_graph.h index 74b603a9b..aea3ad56c 100644 --- a/include/OB-BGL/mol_graph.h +++ b/include/OB-BGL/mol_graph.h @@ -4,7 +4,7 @@ mol_graph.h - interface with Boost Graph Library. Copyright (C) 2007 by Gerde Menche This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/OB-BGL/verbose_visitors.h b/include/OB-BGL/verbose_visitors.h index db3f33dc4..54dba918d 100644 --- a/include/OB-BGL/verbose_visitors.h +++ b/include/OB-BGL/verbose_visitors.h @@ -4,7 +4,7 @@ verbose_visitors.h - visitor classes dumping a short text message for every visi Copyright (C) 2007 by Gerde Menche This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/atom.h b/include/openbabel/atom.h index 97a27bc65..9a79ff914 100644 --- a/include/openbabel/atom.h +++ b/include/openbabel/atom.h @@ -6,7 +6,7 @@ Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison Some portions Copyright (C) 2003 by Michael Banck This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/base.h b/include/openbabel/base.h index b398c8fb5..1c7cde126 100644 --- a/include/openbabel/base.h +++ b/include/openbabel/base.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/bitvec.h b/include/openbabel/bitvec.h index 5c4a3da7c..3bcb26568 100644 --- a/include/openbabel/bitvec.h +++ b/include/openbabel/bitvec.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/bond.h b/include/openbabel/bond.h index a0a462e85..29be014e5 100644 --- a/include/openbabel/bond.h +++ b/include/openbabel/bond.h @@ -7,7 +7,7 @@ Some portions Copyright (C) 2003 by Michael Banck Some portions Copyright (C) 2008 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/bondtyper.h b/include/openbabel/bondtyper.h index 3239f340a..56d64aa2e 100644 --- a/include/openbabel/bondtyper.h +++ b/include/openbabel/bondtyper.h @@ -4,7 +4,7 @@ bondtyper.h - Bond typer to perceive connectivity and bond orders/types. Copyright (C) 2003-2005 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/builder.h b/include/openbabel/builder.h index fe5cd5dab..915088ff7 100644 --- a/include/openbabel/builder.h +++ b/include/openbabel/builder.h @@ -5,7 +5,7 @@ Copyright (C) 2007-2008 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/canon.h b/include/openbabel/canon.h index 798dec8a9..63f9ef48b 100644 --- a/include/openbabel/canon.h +++ b/include/openbabel/canon.h @@ -6,7 +6,7 @@ canon.h - Canonical labeling. Craig A. James This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/chains.h b/include/openbabel/chains.h index 08bed6eb6..8fafed145 100644 --- a/include/openbabel/chains.h +++ b/include/openbabel/chains.h @@ -6,7 +6,7 @@ Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison Some portions Copyright (C) 2008 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/chargemodel.h b/include/openbabel/chargemodel.h index a304509f2..7bc529017 100644 --- a/include/openbabel/chargemodel.h +++ b/include/openbabel/chargemodel.h @@ -5,7 +5,7 @@ Copyright (C) 2010 by Geoffrey Hutchison Some portions Copyright (C) 2009 by Frank Peters This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/chiral.h b/include/openbabel/chiral.h index 78972db62..3f5990930 100644 --- a/include/openbabel/chiral.h +++ b/include/openbabel/chiral.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2005 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/data.h b/include/openbabel/data.h index acd745ec4..883ef864b 100644 --- a/include/openbabel/data.h +++ b/include/openbabel/data.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/depict/depict.h b/include/openbabel/depict/depict.h index 35eafe8e7..0aa77e176 100644 --- a/include/openbabel/depict/depict.h +++ b/include/openbabel/depict/depict.h @@ -5,7 +5,7 @@ Copyright (C) 2009 by Tim Vandermeersch Some portions Copyright (C) 2009 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/depict/painter.h b/include/openbabel/depict/painter.h index 3bd756fa0..7e728fe71 100644 --- a/include/openbabel/depict/painter.h +++ b/include/openbabel/depict/painter.h @@ -5,7 +5,7 @@ Copyright (C) 2009 by Tim Vandermeersch Some portions Copyright (C) 2009 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/depict/svgpainter.h b/include/openbabel/depict/svgpainter.h index ebf6b23f5..d06c022cc 100644 --- a/include/openbabel/depict/svgpainter.h +++ b/include/openbabel/depict/svgpainter.h @@ -4,7 +4,7 @@ svgpainter.h - Rendering in SVG Copyright (C) 2009 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/descriptor.h b/include/openbabel/descriptor.h index 181d399b4..628d5dedd 100644 --- a/include/openbabel/descriptor.h +++ b/include/openbabel/descriptor.h @@ -4,7 +4,7 @@ descriptor.h - Base class for molecular descriptors Copyright (C) 2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/dlhandler.h b/include/openbabel/dlhandler.h index b8e3a8c9b..57def09d5 100644 --- a/include/openbabel/dlhandler.h +++ b/include/openbabel/dlhandler.h @@ -4,7 +4,7 @@ dlhandler.h - Dynamic loader for file format modules. Copyright (C) 2004-2005 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/fingerprint.h b/include/openbabel/fingerprint.h index e10d02d92..db60cf164 100644 --- a/include/openbabel/fingerprint.h +++ b/include/openbabel/fingerprint.h @@ -4,7 +4,7 @@ fingerprint.h - Base class for fingerprints and fast searching Copyright (C) 2005 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/forcefield.h b/include/openbabel/forcefield.h index e5e783473..99e6afd24 100644 --- a/include/openbabel/forcefield.h +++ b/include/openbabel/forcefield.h @@ -4,7 +4,7 @@ forcefield.h - Handle OBForceField class. Copyright (C) 2006-2007 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/format.h b/include/openbabel/format.h index 7cf95213f..407f6d293 100644 --- a/include/openbabel/format.h +++ b/include/openbabel/format.h @@ -5,7 +5,7 @@ Copyright (C) 2004-2007 by Chris Morley Some portions Copyright (C) 2005-2007 by Geoffrey Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/generic.h b/include/openbabel/generic.h index 0355ba19c..80c90d336 100644 --- a/include/openbabel/generic.h +++ b/include/openbabel/generic.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2010 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/graphsym.h b/include/openbabel/graphsym.h index d13e50569..10918f0ad 100755 --- a/include/openbabel/graphsym.h +++ b/include/openbabel/graphsym.h @@ -6,7 +6,7 @@ graphsym.h - Class for handling graph symmetry. Craig A. James This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/grid.h b/include/openbabel/grid.h index d34720c3c..e1f8112d5 100644 --- a/include/openbabel/grid.h +++ b/include/openbabel/grid.h @@ -6,7 +6,7 @@ Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison Some Portions Copyright (C) 2008 by Marcus D. Hanwell This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/griddata.h b/include/openbabel/griddata.h index 8915b5642..0ed5e3542 100644 --- a/include/openbabel/griddata.h +++ b/include/openbabel/griddata.h @@ -7,7 +7,7 @@ griddata.h - Store grids of data linked to a molecule (e.g. Gaussian cube) Some Portions Copyright (C) 2008 by Marcus D. Hanwell This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/groupcontrib.h b/include/openbabel/groupcontrib.h index 58454c410..f59323f80 100644 --- a/include/openbabel/groupcontrib.h +++ b/include/openbabel/groupcontrib.h @@ -8,7 +8,7 @@ Copyright (C) 2007 by Tim Vandermeersch Original version: JOELib2, http://joelib.sf.net This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/internalcoord.h b/include/openbabel/internalcoord.h index ee8d336af..a0ef3de4d 100644 --- a/include/openbabel/internalcoord.h +++ b/include/openbabel/internalcoord.h @@ -6,7 +6,7 @@ Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison Some portions Copyright (C) 2003 by Michael Banck This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/isomorphism.h b/include/openbabel/isomorphism.h index eb3d4a648..896e0dd5e 100644 --- a/include/openbabel/isomorphism.h +++ b/include/openbabel/isomorphism.h @@ -4,7 +4,7 @@ Copyright (C) 2010 by Tim Vandermeersch This file is part of the Open Babel project. - For more information, see + For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/kinetics.h b/include/openbabel/kinetics.h index b8640f9ea..4169bc5a0 100644 --- a/include/openbabel/kinetics.h +++ b/include/openbabel/kinetics.h @@ -2,7 +2,7 @@ Copyright (C) 2005 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/lineend.h b/include/openbabel/lineend.h index e86c656a8..d1b500e78 100644 --- a/include/openbabel/lineend.h +++ b/include/openbabel/lineend.h @@ -5,7 +5,7 @@ lineend.h - Stream buffer for filtering line endings, converting \r or \r\n -> \ Copyright (C) 2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/locale.h b/include/openbabel/locale.h index 17ba41359..e1f160430 100644 --- a/include/openbabel/locale.h +++ b/include/openbabel/locale.h @@ -4,7 +4,7 @@ locale.h - Handle internal numeric locale issues -- parse data in "C" Copyright (C) 2008 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/math/align.h b/include/openbabel/math/align.h index 53ff4b4c7..da947851c 100755 --- a/include/openbabel/math/align.h +++ b/include/openbabel/math/align.h @@ -4,7 +4,7 @@ align.h - Align two molecules or vectors of vector3 Copyright (C) 2010 by Noel M. O'Boyle This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/math/matrix3x3.h b/include/openbabel/math/matrix3x3.h index af2022141..5d12437f4 100644 --- a/include/openbabel/math/matrix3x3.h +++ b/include/openbabel/math/matrix3x3.h @@ -6,7 +6,7 @@ Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison Some portions Copyright (C) 2006 by Benoit Jacob This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/math/spacegroup.h b/include/openbabel/math/spacegroup.h index b15ddef01..e69503646 100644 --- a/include/openbabel/math/spacegroup.h +++ b/include/openbabel/math/spacegroup.h @@ -4,7 +4,7 @@ spacegroup.h - Handle Crystallographic Space Groups. Copyright (C) 2007 by Jean Bréfort This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as diff --git a/include/openbabel/math/transform3d.h b/include/openbabel/math/transform3d.h index 0b2d552e9..b669fafbc 100644 --- a/include/openbabel/math/transform3d.h +++ b/include/openbabel/math/transform3d.h @@ -4,7 +4,7 @@ transform3d.h - Handle 3D transformations in space groups. Copyright (C) 2007 by Jean Bréfort This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as diff --git a/include/openbabel/math/vector3.h b/include/openbabel/math/vector3.h index 6aa14e0e3..a7ffcd4cd 100644 --- a/include/openbabel/math/vector3.h +++ b/include/openbabel/math/vector3.h @@ -6,7 +6,7 @@ Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison Some portions Copyright (C) 2006 by Benoit Jacob This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/matrix.h b/include/openbabel/matrix.h index 6760c7e19..f6dbd99e2 100644 --- a/include/openbabel/matrix.h +++ b/include/openbabel/matrix.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2005 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/mcdlutil.h b/include/openbabel/mcdlutil.h index 2a0677ddf..8f6be5dbd 100644 --- a/include/openbabel/mcdlutil.h +++ b/include/openbabel/mcdlutil.h @@ -5,7 +5,7 @@ Copyright (C) 2007,2008 by Sergei V. Trepalin sergey_trepalin@chemical-block.com Copyright (C) 2007,2008 by Andrei Gakh andrei.gakh@nnsa.doe.gov This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/mol.h b/include/openbabel/mol.h index d227865e1..0d994456e 100644 --- a/include/openbabel/mol.h +++ b/include/openbabel/mol.h @@ -7,7 +7,7 @@ Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison Some portions Copyright (C) 2003 by Michael Banck This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/molchrg.h b/include/openbabel/molchrg.h index 9acba1d19..d74b91fe9 100644 --- a/include/openbabel/molchrg.h +++ b/include/openbabel/molchrg.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2005 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/obconversion.h b/include/openbabel/obconversion.h index c7e6174d7..87fec043c 100644 --- a/include/openbabel/obconversion.h +++ b/include/openbabel/obconversion.h @@ -4,7 +4,7 @@ obconversion.h - Handle file conversions. Declaration of OBFormat, OBConversion Copyright (C) 2004-2009 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/oberror.h b/include/openbabel/oberror.h index cae8b06d2..6fe940672 100644 --- a/include/openbabel/oberror.h +++ b/include/openbabel/oberror.h @@ -5,7 +5,7 @@ Copyright (C) 2002 by Stefan Kebekus Some portions Copyright (C) 2003-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/obiter.h b/include/openbabel/obiter.h index f70d3d0e5..96f81ced1 100644 --- a/include/openbabel/obiter.h +++ b/include/openbabel/obiter.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/obmolecformat.h b/include/openbabel/obmolecformat.h index 302d9eb54..46ec724a0 100644 --- a/include/openbabel/obmolecformat.h +++ b/include/openbabel/obmolecformat.h @@ -4,7 +4,7 @@ obmolecformat.h - Subclass of OBFormat for conversion of OBMol. Copyright (C) 2005 Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -54,7 +54,7 @@ namespace OpenBabel { This class is not intended for direct use outside of Open Babel, unless you're writing a new format converting to or from an OBMol molecule. - (e.g., see http://openbabel.sourceforge.net/wiki/HowTo:Add_A_New_File_Format). + (e.g., see http://openbabel.org/wiki/HowTo:Add_A_New_File_Format). An OBFormat which converts to and/or from OBMol can derive from this class to save duplicating the ReadChemObject() and/or WriteChemObject() methods. diff --git a/include/openbabel/obutil.h b/include/openbabel/obutil.h index 6d741e4d7..7dcb503fe 100644 --- a/include/openbabel/obutil.h +++ b/include/openbabel/obutil.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/op.h b/include/openbabel/op.h index 7d04f62ca..f0619d1a1 100644 --- a/include/openbabel/op.h +++ b/include/openbabel/op.h @@ -4,7 +4,7 @@ op.h - plugin options or operations Copyright (C) 2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/optransform.h b/include/openbabel/optransform.h index 370f315b0..ad18e5f4e 100644 --- a/include/openbabel/optransform.h +++ b/include/openbabel/optransform.h @@ -3,7 +3,7 @@ optransform.h: makes option to transform molecule as specified in a datafile Copyright (C) 2008 Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/parsmart.h b/include/openbabel/parsmart.h index f2d391b03..052898e32 100644 --- a/include/openbabel/parsmart.h +++ b/include/openbabel/parsmart.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2005 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/patty.h b/include/openbabel/patty.h index 0fbfeab3f..1265475df 100644 --- a/include/openbabel/patty.h +++ b/include/openbabel/patty.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2005 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/phmodel.h b/include/openbabel/phmodel.h index e3f1b6a68..5a6e0f401 100644 --- a/include/openbabel/phmodel.h +++ b/include/openbabel/phmodel.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2005 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/plugin.h b/include/openbabel/plugin.h index 2d4f6af28..6a8ebb8bf 100644 --- a/include/openbabel/plugin.h +++ b/include/openbabel/plugin.h @@ -4,7 +4,7 @@ plugin.h - facilitates construction of plugin classes Copyright (C) 2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/pointgroup.h b/include/openbabel/pointgroup.h index 2c500d43f..37c489202 100644 --- a/include/openbabel/pointgroup.h +++ b/include/openbabel/pointgroup.h @@ -5,7 +5,7 @@ Copyright (C) 1996, 2003 S. Patchkovskii, Serguei.Patchkovskii@sympatico.ca Some portions Copyright (C) 2007 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/query.h b/include/openbabel/query.h index c2eede6a9..0512be6eb 100644 --- a/include/openbabel/query.h +++ b/include/openbabel/query.h @@ -4,7 +4,7 @@ Copyright (C) 2010 by Tim Vandermeersch This file is part of the Open Babel project. - For more information, see + For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/rand.h b/include/openbabel/rand.h index 62e7b756a..4230389d5 100644 --- a/include/openbabel/rand.h +++ b/include/openbabel/rand.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/reaction.h b/include/openbabel/reaction.h index c027cd307..02e280fd1 100644 --- a/include/openbabel/reaction.h +++ b/include/openbabel/reaction.h @@ -4,7 +4,7 @@ reaction.h - Handle chemical reactions (i.e., lists of reagents and products). Copyright (C) 2005 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/residue.h b/include/openbabel/residue.h index 436229d61..6e4f58766 100644 --- a/include/openbabel/residue.h +++ b/include/openbabel/residue.h @@ -5,7 +5,7 @@ Copyright (C) 2001, 2002 OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/ring.h b/include/openbabel/ring.h index 0da702461..c237988bc 100644 --- a/include/openbabel/ring.h +++ b/include/openbabel/ring.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2005 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/rotamer.h b/include/openbabel/rotamer.h index 865e27f0f..9a37f1034 100644 --- a/include/openbabel/rotamer.h +++ b/include/openbabel/rotamer.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2000 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/rotor.h b/include/openbabel/rotor.h index 7b224e863..84f95f468 100644 --- a/include/openbabel/rotor.h +++ b/include/openbabel/rotor.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2000 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2005 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/spectrophore.h b/include/openbabel/spectrophore.h index 8d7ceab56..8e7f9f9ed 100644 --- a/include/openbabel/spectrophore.h +++ b/include/openbabel/spectrophore.h @@ -5,7 +5,7 @@ Spectrophore.h - Spectrophore(TM) calculator. Copyright (C) 2005-2010 by Silicos NV This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/stereo/stereo.h b/include/openbabel/stereo/stereo.h index dbe9f9fb1..39b320978 100644 --- a/include/openbabel/stereo/stereo.h +++ b/include/openbabel/stereo/stereo.h @@ -4,7 +4,7 @@ Copyright (C) 2009-2010 by Tim Vandermeersch This file is part of the Open Babel project. - For more information, see + For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/stereo/tetrahedral.h b/include/openbabel/stereo/tetrahedral.h index be6f1edef..bb870ac89 100644 --- a/include/openbabel/stereo/tetrahedral.h +++ b/include/openbabel/stereo/tetrahedral.h @@ -4,7 +4,7 @@ Copyright (C) 2009 by Tim Vandermeersch This file is part of the Open Babel project. - For more information, see + For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/stereo/tetranonplanar.h b/include/openbabel/stereo/tetranonplanar.h index 89a4aeaf8..0d9338bd5 100644 --- a/include/openbabel/stereo/tetranonplanar.h +++ b/include/openbabel/stereo/tetranonplanar.h @@ -4,7 +4,7 @@ Copyright (C) 2009 by Tim Vandermeersch This file is part of the Open Babel project. - For more information, see + For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/stereo/tetraplanar.h b/include/openbabel/stereo/tetraplanar.h index d347f40f0..abd478cdf 100644 --- a/include/openbabel/stereo/tetraplanar.h +++ b/include/openbabel/stereo/tetraplanar.h @@ -4,7 +4,7 @@ Copyright (C) 2009 by Tim Vandermeersch This file is part of the Open Babel project. - For more information, see + For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/text.h b/include/openbabel/text.h index be1d6d1fd..cd571e934 100644 --- a/include/openbabel/text.h +++ b/include/openbabel/text.h @@ -4,7 +4,7 @@ text.h - Declaration and Implementation of OBText Copyright (C) 2008 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/tokenst.h b/include/openbabel/tokenst.h index efaec3512..ad54b5a0c 100644 --- a/include/openbabel/tokenst.h +++ b/include/openbabel/tokenst.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/include/openbabel/typer.h b/include/openbabel/typer.h index aab1bd5ad..bca2e94fc 100644 --- a/include/openbabel/typer.h +++ b/include/openbabel/typer.h @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2005 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/scripts/java/README b/scripts/java/README index afdbc96bb..17a72c75e 100644 --- a/scripts/java/README +++ b/scripts/java/README @@ -7,7 +7,7 @@ other language that runs on the JVM such as Jython or JRuby. The Open Babel wiki pages on Java give information on compiling and running Java programs with Open Babel: -http://openbabel.sourceforge.net/wiki/Java +http://openbabel.org/wiki/Java *** Linux Compilation diff --git a/scripts/perl/README b/scripts/perl/README index 4a6ab1acb..925ef82e2 100644 --- a/scripts/perl/README +++ b/scripts/perl/README @@ -48,7 +48,7 @@ COPYRIGHT AND LICENSE Copyright (C) 2005-2007 Geoffrey R. Hutchison This Perl Module is part of the Open Babel project. - + Open Babel is distributed under the GNU General Public License (GPL). This program is free software; you can redistribute it and/or modify diff --git a/scripts/python/Examples.html b/scripts/python/Examples.html index 0b1c25dc6..31039217a 100644 --- a/scripts/python/Examples.html +++ b/scripts/python/Examples.html @@ -5,7 +5,7 @@ g/TR/xhtml1/DTD/xhtml1-transitional.dtd"> Open Babel: Python Scripting - + @@ -97,7 +97,7 @@ obConversion.WriteFile(mol, '1abc.mol2')

-That's it! There's more information on particular calls in the library API. Feel free to address questions to the openbabel-scripting mailing list. +That's it! There's more information on particular calls in the library API. Feel free to address questions to the openbabel-scripting mailing list.

diff --git a/scripts/python/README b/scripts/python/README index cd6c17089..e2a5a219e 100644 --- a/scripts/python/README +++ b/scripts/python/README @@ -15,7 +15,7 @@ conversion framework OBConversion. For more details, tutorials, example code, etc., please visit the Open Babel website: - + INSTALLATION @@ -45,7 +45,7 @@ Copyright (C) 2005-2007 Geoffrey R. Hutchison Some portions Copyright (C) 2006-2009 Noel O'Boyle This Python module is part of the Open Babel project. - + Open Babel is distributed under the GNU General Public License (GPL). This program is free software; you can redistribute it and/or modify diff --git a/scripts/ruby/README b/scripts/ruby/README index a3d92eff3..f59a27488 100644 --- a/scripts/ruby/README +++ b/scripts/ruby/README @@ -12,7 +12,7 @@ chemistry, solid-state materials, biochemistry, or related areas. This code was automatically generated with SWIG and provides access to almost all of the Open Babel API via Ruby. More details can also be found at the Open Babel website: - + === INSTALLATION === @@ -81,7 +81,7 @@ Copyright (C) 2007 Geoffrey R. Hutchison and Richard L. Apodaca This Ruby module is part of the Open Babel project. - + Open Babel is distributed under the GNU General Public License (GPL). This program is free software; you can redistribute it and/or modify diff --git a/src/GUI/OBGUI.cpp b/src/GUI/OBGUI.cpp index 84528341f..d86b73891 100644 --- a/src/GUI/OBGUI.cpp +++ b/src/GUI/OBGUI.cpp @@ -4,7 +4,7 @@ OBGUI.cpp - Implementation of a cross-platform Graphical User Interface Copyright (C) 2006 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -461,9 +461,9 @@ void OBGUIFrame::OnAbout(wxCommandEvent& WXUNUSED(event)) { wxString msg(_T("OpenBabelGUI (C) 2006 by Chris Morley\n\nThis program is part of\ the OpenBabel project,\nwhich is released under the GNU General Public License.\n\ -See: http://openbabel.sourceforge.net/wiki/Main_Page\n\n\ +See: http://openbabel.org/wiki/Main_Page\n\n\ For more detailed information see:\n\ -http://openbabel.sourceforge.net/wiki/Windows_GUI\n\n \ +http://openbabel.org/wiki/Windows_GUI\n\n \ OpenBabel version ")); msg << _T(BABEL_VERSION); wxMessageBox(msg, _T("About OpenBabelGUI"), wxOK | wxICON_INFORMATION | wxCENTER, this); diff --git a/src/GUI/OBGUI.h b/src/GUI/OBGUI.h index c8f481ed3..1fa5a4d88 100644 --- a/src/GUI/OBGUI.h +++ b/src/GUI/OBGUI.h @@ -4,7 +4,7 @@ OBGUI.h - Cross-platform Graphical User Interface Copyright (C) 2006 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/GUI/optswx.cpp b/src/GUI/optswx.cpp index 5916db6e3..5762d1a47 100644 --- a/src/GUI/optswx.cpp +++ b/src/GUI/optswx.cpp @@ -4,7 +4,7 @@ optswx.cpp - Constructs wxWidgets Option controls from description text Copyright (C) 2006 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/GUI/optswx.h b/src/GUI/optswx.h index bd3b1530e..b997b4544 100644 --- a/src/GUI/optswx.h +++ b/src/GUI/optswx.h @@ -4,7 +4,7 @@ optswx.h - Constructs wxWidgets Option controls from description text Copyright (C) 2006 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/GUI/stdwx.h b/src/GUI/stdwx.h index 6b4fd8d2c..50ccb0537 100644 --- a/src/GUI/stdwx.h +++ b/src/GUI/stdwx.h @@ -4,7 +4,7 @@ OBGUI.h - Cross-platform Graphical User Interface Copyright (C) 2006 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/RDKitConv.cpp b/src/RDKitConv.cpp index 2015feb1b..54e23a6bd 100644 --- a/src/RDKitConv.cpp +++ b/src/RDKitConv.cpp @@ -4,7 +4,7 @@ RDKitConv.cpp - Convert OpenBabel OBMol to RGKit molecules Copyright (C) 2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/atom.cpp b/src/atom.cpp index b09fb1767..8970b5fcf 100644 --- a/src/atom.cpp +++ b/src/atom.cpp @@ -6,7 +6,7 @@ Some portions Copyright (C) 2001-2008 by Geoffrey R. Hutchison Some portions Copyright (C) 2003 by Michael Banck This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/base.cpp b/src/base.cpp index 2f83ae578..2c98e044b 100644 --- a/src/base.cpp +++ b/src/base.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/bitvec.cpp b/src/bitvec.cpp index ebb4fcd58..830c6fc58 100644 --- a/src/bitvec.cpp +++ b/src/bitvec.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/bond.cpp b/src/bond.cpp index 090caba97..985a5ae29 100644 --- a/src/bond.cpp +++ b/src/bond.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/bondtyper.cpp b/src/bondtyper.cpp index 1e56058fb..82e09a545 100644 --- a/src/bondtyper.cpp +++ b/src/bondtyper.cpp @@ -4,7 +4,7 @@ bondtyper.cpp - Bond typer to perceive connectivity and bond orders/types. Copyright (C) 2003-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/builder.cpp b/src/builder.cpp index 330a62327..5fd1ac655 100644 --- a/src/builder.cpp +++ b/src/builder.cpp @@ -5,7 +5,7 @@ Copyright (C) 2007-2008 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/canon.cpp b/src/canon.cpp index f48195ce5..4f99545c8 100644 --- a/src/canon.cpp +++ b/src/canon.cpp @@ -6,7 +6,7 @@ canon.h - Canonical labeling. Craig A. James This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/chains.cpp b/src/chains.cpp index 1a030cc6c..2664a4789 100644 --- a/src/chains.cpp +++ b/src/chains.cpp @@ -7,7 +7,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/chargemodel.cpp b/src/chargemodel.cpp index db88a3363..77c452e70 100644 --- a/src/chargemodel.cpp +++ b/src/chargemodel.cpp @@ -5,7 +5,7 @@ Copyright (C) 2010 Geoffrey Hutchison Some portions Copyright (C) 2009 by Frank Peters This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/charges/gasteiger.cpp b/src/charges/gasteiger.cpp index 4a61fd600..cbf654176 100644 --- a/src/charges/gasteiger.cpp +++ b/src/charges/gasteiger.cpp @@ -4,7 +4,7 @@ gasteiger.cpp - A OBChargeModel to handle Gasteiger sigma charges Copyright (C) 2010 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/charges/mmff94.cpp b/src/charges/mmff94.cpp index 848cc8934..93539ed80 100644 --- a/src/charges/mmff94.cpp +++ b/src/charges/mmff94.cpp @@ -4,7 +4,7 @@ mmff94.cpp - A OBChargeModel to assign MMFF94 partial charges Copyright (C) 2010 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/charges/qeq.cpp b/src/charges/qeq.cpp index cc7057f59..f6ab0b64a 100644 --- a/src/charges/qeq.cpp +++ b/src/charges/qeq.cpp @@ -4,7 +4,7 @@ qeq.cpp - A OBChargeModel to handle QEq charges Copyright (C) 2010 by Jiahao Chen This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/charges/qeq.h b/src/charges/qeq.h index 226b20693..0aa557c46 100644 --- a/src/charges/qeq.h +++ b/src/charges/qeq.h @@ -4,7 +4,7 @@ qeq.h - A OBChargeModel to handle QEq charges Copyright (C) 2010 by Jiahao Chen This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/charges/qtpie.cpp b/src/charges/qtpie.cpp index a92403f23..649d31287 100644 --- a/src/charges/qtpie.cpp +++ b/src/charges/qtpie.cpp @@ -4,7 +4,7 @@ qtpie.cpp - A OBChargeModel to handle QTPIE charges Copyright (C) 2010 by Jiahao Chen This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/charges/qtpie.h b/src/charges/qtpie.h index 4790427f1..c39b5e047 100644 --- a/src/charges/qtpie.h +++ b/src/charges/qtpie.h @@ -4,7 +4,7 @@ qtpie.h - A OBChargeModel to handle QTPIE charges Copyright (C) 2010 by Jiahao Chen This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/chiral.cpp b/src/chiral.cpp index e9c1f351a..e9c4221bc 100644 --- a/src/chiral.cpp +++ b/src/chiral.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/data.cpp b/src/data.cpp index 71a376871..5b222912c 100644 --- a/src/data.cpp +++ b/src/data.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2008 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/depict/depict.cpp b/src/depict/depict.cpp index 104f03345..3d562c4f5 100644 --- a/src/depict/depict.cpp +++ b/src/depict/depict.cpp @@ -5,7 +5,7 @@ Copyright (C) 2009 by Tim Vandermeersch Some portions Copyright (C) 2009 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/depict/svgpainter.cpp b/src/depict/svgpainter.cpp index 14ef6720e..b0e7bc0f3 100644 --- a/src/depict/svgpainter.cpp +++ b/src/depict/svgpainter.cpp @@ -4,7 +4,7 @@ svgpainter.cpp - Implementation of rendering in SVG Copyright (C) 2009 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/descriptor.cpp b/src/descriptor.cpp index 94703eacf..b1b2ddb2d 100644 --- a/src/descriptor.cpp +++ b/src/descriptor.cpp @@ -4,7 +4,7 @@ descriptor.cpp - Implementation of the base class for molecular descriptors Copyright (C) 2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/descriptors/cansmidescriptor.cpp b/src/descriptors/cansmidescriptor.cpp index 8ed0b2eec..be78dd920 100644 --- a/src/descriptors/cansmidescriptor.cpp +++ b/src/descriptors/cansmidescriptor.cpp @@ -4,7 +4,7 @@ cansmi.cpp - OBDescriptor class accessing Canonical SMILES Copyright (C) 2009 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/descriptors/cmpdfilter.cpp b/src/descriptors/cmpdfilter.cpp index d53366b52..c3c7f9d62 100644 --- a/src/descriptors/cmpdfilter.cpp +++ b/src/descriptors/cmpdfilter.cpp @@ -4,7 +4,7 @@ cmpdfilter.cpp - OBDescriptor class to Copyright (C) 2008 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/descriptors/filters.cpp b/src/descriptors/filters.cpp index 7393352bf..b71161393 100644 --- a/src/descriptors/filters.cpp +++ b/src/descriptors/filters.cpp @@ -4,7 +4,7 @@ filters.cpp - Some classes derived from OBDescriptor Copyright (C) 2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/descriptors/groupcontrib.cpp b/src/descriptors/groupcontrib.cpp index c7a79441f..dcd0a677a 100644 --- a/src/descriptors/groupcontrib.cpp +++ b/src/descriptors/groupcontrib.cpp @@ -9,7 +9,7 @@ Copyright (C) 2007 by Tim Vandermeersch Original version: JOELib2, http://joelib.sf.net This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/descriptors/inchidescriptor.cpp b/src/descriptors/inchidescriptor.cpp index c479cc02c..391144d4b 100644 --- a/src/descriptors/inchidescriptor.cpp +++ b/src/descriptors/inchidescriptor.cpp @@ -4,7 +4,7 @@ inchifilter.cpp - A descriptor giving an InChI string Copyright (C) 2009 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/descriptors/smartsdescriptors.cpp b/src/descriptors/smartsdescriptors.cpp index 6cab0b06f..0d1114f2b 100644 --- a/src/descriptors/smartsdescriptors.cpp +++ b/src/descriptors/smartsdescriptors.cpp @@ -4,7 +4,7 @@ smartsfilters.cpp - Some descriptors which analyse molecule using SMARTS Copyright (C) 2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/dlhandler_unix.cpp b/src/dlhandler_unix.cpp index 443eb88c1..5bffac317 100644 --- a/src/dlhandler_unix.cpp +++ b/src/dlhandler_unix.cpp @@ -5,7 +5,7 @@ Copyright (C) 2004 by Chris Morley Some portions Copyright (C) 2004-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/dlhandler_win32.cpp b/src/dlhandler_win32.cpp index 2855d30a6..ed4a1b6b6 100644 --- a/src/dlhandler_win32.cpp +++ b/src/dlhandler_win32.cpp @@ -4,7 +4,7 @@ dlhandler_win32.cpp - Dynamic loader for Win32 (handles file format DDLs) Copyright (C) 2004 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/fingerprint.cpp b/src/fingerprint.cpp index 27d44c61e..4dc0e3479 100644 --- a/src/fingerprint.cpp +++ b/src/fingerprint.cpp @@ -4,7 +4,7 @@ fingerprint.cpp - Implementation of fingerpring base class and fastsearching Copyright (C) 2005 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/fingerprints/finger2.cpp b/src/fingerprints/finger2.cpp index 68762eccf..9c4087d6d 100644 --- a/src/fingerprints/finger2.cpp +++ b/src/fingerprints/finger2.cpp @@ -4,7 +4,7 @@ finger2.cpp: fingerprint2 definition and implementation. Copyright (C) 2005 Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/fingerprints/finger3.cpp b/src/fingerprints/finger3.cpp index 6f160336f..f6f0786ad 100644 --- a/src/fingerprints/finger3.cpp +++ b/src/fingerprints/finger3.cpp @@ -3,7 +3,7 @@ finger3.cpp: Fingerprints based on list of SMARTS patterns Copyright (C) 2005 Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/forcefield.cpp b/src/forcefield.cpp index 53eea7c8b..50d67a82d 100644 --- a/src/forcefield.cpp +++ b/src/forcefield.cpp @@ -5,7 +5,7 @@ Copyright (C) 2006-2007 by Tim Vandermeersch Some portions Copyright (C) 2007-2008 by Geoffrey Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/forcefields/forcefieldgaff.cpp b/src/forcefields/forcefieldgaff.cpp index b45bad994..d525884b6 100644 --- a/src/forcefields/forcefieldgaff.cpp +++ b/src/forcefields/forcefieldgaff.cpp @@ -5,7 +5,7 @@ Copyright (C) 2009 by Frank Peters Copyright (C) 2006-2007 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/forcefields/forcefieldgaff.h b/src/forcefields/forcefieldgaff.h index 5725ee0a4..4770a6244 100644 --- a/src/forcefields/forcefieldgaff.h +++ b/src/forcefields/forcefieldgaff.h @@ -5,7 +5,7 @@ Copyright (C) 2009 by Frank Peters Copyright (C) 2006 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/forcefields/forcefieldghemical.cpp b/src/forcefields/forcefieldghemical.cpp index 3c3aa9012..9d3622799 100644 --- a/src/forcefields/forcefieldghemical.cpp +++ b/src/forcefields/forcefieldghemical.cpp @@ -4,7 +4,7 @@ forcefieldghemical.cpp - Ghemical force field. Copyright (C) 2006-2007 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/forcefields/forcefieldghemical.h b/src/forcefields/forcefieldghemical.h index 78ad9b59e..5cd70ee08 100644 --- a/src/forcefields/forcefieldghemical.h +++ b/src/forcefields/forcefieldghemical.h @@ -4,7 +4,7 @@ forcefieldghemical.h - Ghemical force field. Copyright (C) 2006 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/forcefields/forcefieldmm2.cpp b/src/forcefields/forcefieldmm2.cpp index 5f90ff55c..d6483ef26 100644 --- a/src/forcefields/forcefieldmm2.cpp +++ b/src/forcefields/forcefieldmm2.cpp @@ -4,7 +4,7 @@ forcefieldmm2.cpp - MM2 force field. Copyright (C) 2006-2007 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/forcefields/forcefieldmm2.h b/src/forcefields/forcefieldmm2.h index fa02f33f3..4fbf41a6e 100644 --- a/src/forcefields/forcefieldmm2.h +++ b/src/forcefields/forcefieldmm2.h @@ -4,7 +4,7 @@ forcefieldmm2.h - MM2 force field. Copyright (C) 2006 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/forcefields/forcefieldmmff94.cpp b/src/forcefields/forcefieldmmff94.cpp index 1311613a0..60c9e1b87 100644 --- a/src/forcefields/forcefieldmmff94.cpp +++ b/src/forcefields/forcefieldmmff94.cpp @@ -4,7 +4,7 @@ forcefieldmmff94.cpp - MMFF94 force field Copyright (C) 2006-2008 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/forcefields/forcefieldmmff94.h b/src/forcefields/forcefieldmmff94.h index b41c502bf..1d6156db7 100644 --- a/src/forcefields/forcefieldmmff94.h +++ b/src/forcefields/forcefieldmmff94.h @@ -4,7 +4,7 @@ forcefieldmmff94.h - MMFF94 Copyright (C) 2006 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/forcefields/forcefielduff.cpp b/src/forcefields/forcefielduff.cpp index e5f6412c4..e70d3f9cc 100644 --- a/src/forcefields/forcefielduff.cpp +++ b/src/forcefields/forcefielduff.cpp @@ -5,7 +5,7 @@ Copyright (C) 2007-2008 by Geoffrey Hutchison Some portions Copyright (C) 2006-2008 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/forcefields/forcefielduff.h b/src/forcefields/forcefielduff.h index f5db1d551..8ced5b5a1 100644 --- a/src/forcefields/forcefielduff.h +++ b/src/forcefields/forcefielduff.h @@ -5,7 +5,7 @@ Copyright (C) 2007 by Geoffrey Hutchison Some portions Copyright (C) 2006-2007 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/format.cpp b/src/format.cpp index eaea44a0b..981cb88fb 100644 --- a/src/format.cpp +++ b/src/format.cpp @@ -5,7 +5,7 @@ Copyright (C) 2004 by Chris Morley Some portions Copyright (C) 2005-2007 by Geoffrey Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/APIInterface.cpp b/src/formats/APIInterface.cpp index c7ea2a23a..ff2e883a9 100644 --- a/src/formats/APIInterface.cpp +++ b/src/formats/APIInterface.cpp @@ -4,7 +4,7 @@ APIInterface.cpp - Pseudo-format to transfer data from user interface to API Copyright (C) 2005 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/MCDLformat.cpp b/src/formats/MCDLformat.cpp index 23021252c..797acea20 100644 --- a/src/formats/MCDLformat.cpp +++ b/src/formats/MCDLformat.cpp @@ -6,7 +6,7 @@ Copyright (C) 2007 by Andrei Gakh andrei.gakh@nnsa.doe.gov Code translation from Java This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/chemkinformat.cpp b/src/formats/chemkinformat.cpp index 73f8fb2e4..3b7eeb70b 100644 --- a/src/formats/chemkinformat.cpp +++ b/src/formats/chemkinformat.cpp @@ -2,7 +2,7 @@ Copyright (C) 2005-2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/chemtoolformat.cpp b/src/formats/chemtoolformat.cpp index 3e054b4b1..6242c46d0 100644 --- a/src/formats/chemtoolformat.cpp +++ b/src/formats/chemtoolformat.cpp @@ -3,7 +3,7 @@ Copyright (C) 2003 by Michael Banck Some portions Copyright (C) 2004 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/cifformat.cpp b/src/formats/cifformat.cpp index 79bd78261..035f2483c 100644 --- a/src/formats/cifformat.cpp +++ b/src/formats/cifformat.cpp @@ -4,7 +4,7 @@ cifformat.cpp - Implementation of subclass of OBFormat for conversion of OBMol. Copyright (C) 2006 Vincent Favre-Nicolin This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/fastaformat.cpp b/src/formats/fastaformat.cpp index dcfc905e3..3f09f5fd1 100644 --- a/src/formats/fastaformat.cpp +++ b/src/formats/fastaformat.cpp @@ -5,7 +5,7 @@ Read sequence functions, helix generation and completed IUPAC coverage. Copyright (C) Scarlet Line 2007-9 This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/freefracformat.cpp b/src/formats/freefracformat.cpp index 691549f64..e219fec04 100644 --- a/src/formats/freefracformat.cpp +++ b/src/formats/freefracformat.cpp @@ -84,7 +84,7 @@ namespace OpenBabel }; virtual const char* SpecificationURL() - {return "http://openbabel.sourceforge.net/wiki/Free_Form_Fractional";}; //optional + {return "http://openbabel.org/wiki/Free_Form_Fractional";}; //optional //*** This section identical for most OBMol conversions *** //////////////////////////////////////////////////// diff --git a/src/formats/gausscubeformat.cpp b/src/formats/gausscubeformat.cpp index 672b89f35..f075158a4 100644 --- a/src/formats/gausscubeformat.cpp +++ b/src/formats/gausscubeformat.cpp @@ -9,7 +9,7 @@ gausscubeformat.cpp - Read in Gaussian cube format files. Some Portions Copyright (C) 2008 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/genbankformat.cpp b/src/formats/genbankformat.cpp index 107a1cfb9..8e9e9d511 100755 --- a/src/formats/genbankformat.cpp +++ b/src/formats/genbankformat.cpp @@ -3,7 +3,7 @@ genbankformat.cpp - Conversion from genbank format. Copyright (C) Scarlet Line 2008 This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/getinchi.cpp b/src/formats/getinchi.cpp index 51f3140e6..3da4c8613 100644 --- a/src/formats/getinchi.cpp +++ b/src/formats/getinchi.cpp @@ -2,7 +2,7 @@ Copyright (C) 2006 Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/mdlformat.cpp b/src/formats/mdlformat.cpp index ecad228b2..f69ceb718 100644 --- a/src/formats/mdlformat.cpp +++ b/src/formats/mdlformat.cpp @@ -4,7 +4,7 @@ Some portions Copyright (C) 2001-2006 by Geoffrey Hutchison Portions Copyright (C) 2004-2006 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/mmcifformat.cpp b/src/formats/mmcifformat.cpp index 99b1790e1..d175a7419 100755 --- a/src/formats/mmcifformat.cpp +++ b/src/formats/mmcifformat.cpp @@ -3,7 +3,7 @@ mmcifformat.cpp - Conversion to and from mmCIF format. Copyright (C) Scarlet Line 2007 This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -861,7 +861,7 @@ namespace OpenBabel } ofs << "# --------------------------------------------------------------------------" << endl; ofs << "#" << endl; - ofs << "# CIF file generated by openbabel " << BABEL_VERSION << " http://openbabel.sourceforge.net/" << endl; + ofs << "# CIF file generated by openbabel " << BABEL_VERSION << " http://openbabel.org/" << endl; ofs << "# to comply with the Macromolecular CIF Dictionary (cif_mm.dic) version 2.0.11 http://mmcif.pdb.org/" << endl; ofs << "# The contents of this file were derived from " << pConv->GetInFilename() << endl; ofs << "#" << endl; diff --git a/src/formats/molreport.cpp b/src/formats/molreport.cpp index ddfccee00..8bc5cd14d 100644 --- a/src/formats/molreport.cpp +++ b/src/formats/molreport.cpp @@ -5,7 +5,7 @@ molreport.cpp - Report information about the molecule: Copyright (C) 2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -68,7 +68,7 @@ namespace OpenBabel }; virtual const char* SpecificationURL() - {return "http://openbabel.sourceforge.net/wiki/MolReport";}; //optional + {return "http://openbabel.org/wiki/MolReport";}; //optional //Flags() can return be any the following combined by | or be omitted if none apply // NOTREADABLE READONEONLY NOTWRITABLE WRITEONEONLY diff --git a/src/formats/mpdformat.cpp b/src/formats/mpdformat.cpp index be42665b7..5dd8ff0c7 100644 --- a/src/formats/mpdformat.cpp +++ b/src/formats/mpdformat.cpp @@ -4,7 +4,7 @@ mpdformat.cpp - Write only format to produce descriptors of molecules Copyright (C) 2005 Nick England This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/msiformat.cpp b/src/formats/msiformat.cpp index 052a07361..967315004 100644 --- a/src/formats/msiformat.cpp +++ b/src/formats/msiformat.cpp @@ -36,7 +36,7 @@ namespace OpenBabel }; virtual const char* SpecificationURL() - {return "http://openbabel.sourceforge.net/wiki/MSI_format";}; //optional + {return "http://openbabel.org/wiki/MSI_format";}; //optional virtual const char* GetMIMEType() { return "chemical/x-msi-msi"; }; diff --git a/src/formats/opendxformat.cpp b/src/formats/opendxformat.cpp index 1c7d3c666..60b1a549c 100644 --- a/src/formats/opendxformat.cpp +++ b/src/formats/opendxformat.cpp @@ -5,7 +5,7 @@ opendxformat.cpp - Read in OpenDX cube format files from APBS Some Portions Copyright (C) 2008 by Marcus D. Hanwell This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/outformat.cpp b/src/formats/outformat.cpp index eb90bd5ca..8ed0e9087 100644 --- a/src/formats/outformat.cpp +++ b/src/formats/outformat.cpp @@ -47,7 +47,7 @@ namespace OpenBabel }; virtual const char* SpecificationURL() - {return "http://openbabel.sourceforge.net/wiki/Output";}; //optional + {return "http://openbabel.org/wiki/Output";}; //optional //Flags() can return be any the following combined by | or be omitted if none apply // NOTREADABLE READONEONLY NOTWRITABLE WRITEONEONLY diff --git a/src/formats/reportformat.cpp b/src/formats/reportformat.cpp index 96e887f5b..30b87f199 100644 --- a/src/formats/reportformat.cpp +++ b/src/formats/reportformat.cpp @@ -7,7 +7,7 @@ Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison Some portions Copyright (C) 2004 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/rsmiformat.cpp b/src/formats/rsmiformat.cpp index c698a0588..ca8c5e05d 100644 --- a/src/formats/rsmiformat.cpp +++ b/src/formats/rsmiformat.cpp @@ -2,7 +2,7 @@ Copyright (C) 2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/rxnformat.cpp b/src/formats/rxnformat.cpp index 8916fb6e3..07816fffe 100644 --- a/src/formats/rxnformat.cpp +++ b/src/formats/rxnformat.cpp @@ -2,7 +2,7 @@ Copyright (C) 2004 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/thermoformat.cpp b/src/formats/thermoformat.cpp index 9967115e8..63f8f3e8b 100644 --- a/src/formats/thermoformat.cpp +++ b/src/formats/thermoformat.cpp @@ -2,7 +2,7 @@ Copyright (C) 2005 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/titleformat.cpp b/src/formats/titleformat.cpp index a6db73de7..45b622552 100644 --- a/src/formats/titleformat.cpp +++ b/src/formats/titleformat.cpp @@ -4,7 +4,7 @@ titleformat.h - Displays and reads molecule titles Copyright (C) 2005 Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/turbomoleformat.cpp b/src/formats/turbomoleformat.cpp index 726d8ea11..da853606b 100644 --- a/src/formats/turbomoleformat.cpp +++ b/src/formats/turbomoleformat.cpp @@ -2,7 +2,7 @@ Copyright (C) 2004 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/xml/cdxmlformat.cpp b/src/formats/xml/cdxmlformat.cpp index 391320b0c..c45e89db8 100644 --- a/src/formats/xml/cdxmlformat.cpp +++ b/src/formats/xml/cdxmlformat.cpp @@ -3,7 +3,7 @@ Copyright (C) 2006 by Geoff Hutchison Portions Copyright (C) 2010 by Joerg Kurt Wegner This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/xml/cmlformat.cpp b/src/formats/xml/cmlformat.cpp index fa1a633a4..3a0cdd069 100644 --- a/src/formats/xml/cmlformat.cpp +++ b/src/formats/xml/cmlformat.cpp @@ -3,7 +3,7 @@ Copyright (C) 2005 by Chris Morley Some portions Copyright (C) 2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/xml/pubchem.cpp b/src/formats/xml/pubchem.cpp index 26b9a7b85..da13dad17 100644 --- a/src/formats/xml/pubchem.cpp +++ b/src/formats/xml/pubchem.cpp @@ -2,7 +2,7 @@ Copyright (C) 2005 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/formats/xyzformat.cpp b/src/formats/xyzformat.cpp index 93dddb705..0641831c4 100644 --- a/src/formats/xyzformat.cpp +++ b/src/formats/xyzformat.cpp @@ -81,7 +81,7 @@ namespace OpenBabel }; virtual const char* SpecificationURL() - {return "http://openbabel.sourceforge.net/wiki/XYZ";}; //optional + {return "http://openbabel.org/wiki/XYZ";}; //optional virtual const char* GetMIMEType() { return "chemical/x-xyz"; }; diff --git a/src/generic.cpp b/src/generic.cpp index e978fcd47..7b2daa97e 100644 --- a/src/generic.cpp +++ b/src/generic.cpp @@ -6,7 +6,7 @@ Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison Some portions Copyright (C) 2010 by David Lonie This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -46,7 +46,7 @@ namespace OpenBabel For more information on currently supported types, please see the developer wiki: - http://openbabel.sourceforge.net/wiki/Generic_Data + http://openbabel.org/wiki/Generic_Data For your own custom data, either define a custom subclass using an id from the OBGenericDataType::CustomData0 to diff --git a/src/graphsym.cpp b/src/graphsym.cpp index b382830d5..d52fd9c91 100644 --- a/src/graphsym.cpp +++ b/src/graphsym.cpp @@ -5,7 +5,7 @@ Copyright (C) 2005-2006, eMolecules, Inc. (www.emolecules.com) This file is part of the Open Babel project. - For more information, see + For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/grid.cpp b/src/grid.cpp index e1004222f..7325e150b 100644 --- a/src/grid.cpp +++ b/src/grid.cpp @@ -6,7 +6,7 @@ Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison Some Portions Copyright (C) 2008 by Marcus D. Hanwell This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/griddata.cpp b/src/griddata.cpp index d607d4f07..9e2cac1d6 100644 --- a/src/griddata.cpp +++ b/src/griddata.cpp @@ -8,7 +8,7 @@ griddata.cpp - Store grids of data linked to a molecule (e.g. Gaussian cube) Some Portions Copyright (C) 2008 by Marcus D. Hanwell This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/kekulize.cpp b/src/kekulize.cpp index 3fc56a984..91696187b 100644 --- a/src/kekulize.cpp +++ b/src/kekulize.cpp @@ -6,7 +6,7 @@ Some portions Copyright (C) 2005-2006 by Geoffrey R. Hutchison Some portions Copyright (C) 2009 by Craig A. James This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -18,7 +18,8 @@ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. ***********************************************************************/ -#define DEBUG 0 +#define DEBUG 1 + #ifndef MAX_TIME #define MAX_TIME 60 #endif @@ -339,8 +340,8 @@ namespace OpenBabel } } - /* - cout << "minde after:" << minde < +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/math/align.cpp b/src/math/align.cpp index 09c66c909..6881074a7 100755 --- a/src/math/align.cpp +++ b/src/math/align.cpp @@ -4,7 +4,7 @@ align.cpp - Align two molecules or vectors of vector3 Copyright (C) 2010 by Noel M. O'Boyle This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/math/matrix3x3.cpp b/src/math/matrix3x3.cpp index d0047c923..5df9e4bc8 100644 --- a/src/math/matrix3x3.cpp +++ b/src/math/matrix3x3.cpp @@ -6,7 +6,7 @@ Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison Some portions Copyright (C) 2006 by Benoit Jacob This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/math/spacegroup.cpp b/src/math/spacegroup.cpp index 83f276918..76c682566 100644 --- a/src/math/spacegroup.cpp +++ b/src/math/spacegroup.cpp @@ -4,7 +4,7 @@ spacegroup.cpp - Handle Space Groups. Copyright (C) 2007 by Jean Bréfort This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as diff --git a/src/math/transform3d.cpp b/src/math/transform3d.cpp index f0505cd97..c2f7e1368 100644 --- a/src/math/transform3d.cpp +++ b/src/math/transform3d.cpp @@ -4,7 +4,7 @@ transform3d.cpp - Handle 3D transformations in space groups. Copyright (C) 2007 by Jean Bréfort This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as diff --git a/src/math/vector3.cpp b/src/math/vector3.cpp index d8fefc784..4b14fb6cd 100644 --- a/src/math/vector3.cpp +++ b/src/math/vector3.cpp @@ -6,7 +6,7 @@ Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison Some portions Copyright (C) 2006 by Benoit Jacob This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/matrix.cpp b/src/matrix.cpp index 8ce288495..57491c8fb 100644 --- a/src/matrix.cpp +++ b/src/matrix.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/mcdlutil.cpp b/src/mcdlutil.cpp index c196f1bb2..d81456640 100644 --- a/src/mcdlutil.cpp +++ b/src/mcdlutil.cpp @@ -6,7 +6,7 @@ Copyright (C) 2007,2008 by Sergei V. Trepalin sergey_trepalin@chemical-block.com Copyright (C) 2007,2008 by Andrei Gakh andrei.gakh@nnsa.doe.gov This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/mol.cpp b/src/mol.cpp index fc001b519..533975d15 100644 --- a/src/mol.cpp +++ b/src/mol.cpp @@ -6,7 +6,7 @@ Some portions Copyright (C) 2001-2008 by Geoffrey R. Hutchison Some portions Copyright (C) 2003 by Michael Banck This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/molchrg.cpp b/src/molchrg.cpp index a880a5022..05281c28d 100644 --- a/src/molchrg.cpp +++ b/src/molchrg.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2005 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/obconversion.cpp b/src/obconversion.cpp index e539e9ef0..e97019908 100644 --- a/src/obconversion.cpp +++ b/src/obconversion.cpp @@ -5,7 +5,7 @@ Copyright (C) 2004 by Chris Morley Some portions Copyright (C) 2005-2006 by Geoffrey Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/oberror.cpp b/src/oberror.cpp index a42f9e9b6..eaf8271b5 100644 --- a/src/oberror.cpp +++ b/src/oberror.cpp @@ -5,7 +5,7 @@ Copyright (C) 2002 by Stefan Kebekus Some portions Copyright (C) 2002-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/obiter.cpp b/src/obiter.cpp index 536ba27ca..9bf61c8b6 100644 --- a/src/obiter.cpp +++ b/src/obiter.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/obmolecformat.cpp b/src/obmolecformat.cpp index c689357f3..0f4b9f22b 100644 --- a/src/obmolecformat.cpp +++ b/src/obmolecformat.cpp @@ -4,7 +4,7 @@ obmolecformat.cpp - Implementation of subclass of OBFormat for conversion of OBM Copyright (C) 2005 Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/obutil.cpp b/src/obutil.cpp index 608936a71..c85f82183 100644 --- a/src/obutil.cpp +++ b/src/obutil.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/op.cpp b/src/op.cpp index c4a67ee7c..3facf096b 100644 --- a/src/op.cpp +++ b/src/op.cpp @@ -4,7 +4,7 @@ op.cpp - Copyright (C) 2009 Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/addinindex.cpp b/src/ops/addinindex.cpp index f7864a324..78c79966c 100644 --- a/src/ops/addinindex.cpp +++ b/src/ops/addinindex.cpp @@ -4,7 +4,7 @@ addinindex.cpp - Adds input index to title. Copyright(C) 2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/addpolarh.cpp b/src/ops/addpolarh.cpp index 82ed9bc02..634fcf777 100644 --- a/src/ops/addpolarh.cpp +++ b/src/ops/addpolarh.cpp @@ -4,7 +4,7 @@ AddPolarH.cpp - The option --AddPolarHAdds adds hydrogen to polar atoms only. Copyright(C) 2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/canonical.cpp b/src/ops/canonical.cpp index f8f59786d..aa60d437c 100644 --- a/src/ops/canonical.cpp +++ b/src/ops/canonical.cpp @@ -4,7 +4,7 @@ canonical.cpp - A OBOp for generation for renumbering atoms canonical Copyright (C) 2010 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/conformer.cpp b/src/ops/conformer.cpp index 32121b229..e2c623193 100644 --- a/src/ops/conformer.cpp +++ b/src/ops/conformer.cpp @@ -5,7 +5,7 @@ conformer.cpp - A OBOp to calculate and minimize the energy using a Copyright (C) 2010 by Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/fillUC.cpp b/src/ops/fillUC.cpp index d27d03935..000ead7b4 100644 --- a/src/ops/fillUC.cpp +++ b/src/ops/fillUC.cpp @@ -5,7 +5,7 @@ using unit cell & spacegroup operations Copyright (C) 2009 Vincent Favre-Nicolin This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/forcefield.cpp b/src/ops/forcefield.cpp index b06e66caf..7c5c60360 100644 --- a/src/ops/forcefield.cpp +++ b/src/ops/forcefield.cpp @@ -6,7 +6,7 @@ Copyright (C) 2006-2007 by Tim Vandermeersch (C) 2009 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/gen2D.cpp b/src/ops/gen2D.cpp index e837714a5..c15c6f8ba 100644 --- a/src/ops/gen2D.cpp +++ b/src/ops/gen2D.cpp @@ -6,7 +6,7 @@ Copyright (C) 2007,2008 by Andrei Gakh andrei.gakh@nnsa.doe.gov (C) 2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/gen3d.cpp b/src/ops/gen3d.cpp index edbf0cdd2..1683bac2e 100644 --- a/src/ops/gen3d.cpp +++ b/src/ops/gen3d.cpp @@ -5,7 +5,7 @@ Copyright (C) 2006-2007 by Tim Vandermeersch (C) 2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/loader.cpp b/src/ops/loader.cpp index 666d5bb75..5e7b9ed7d 100644 --- a/src/ops/loader.cpp +++ b/src/ops/loader.cpp @@ -4,7 +4,7 @@ loader.cpp Plugin type "loaders" Copyright (C) 2008 Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/op2d.cpp b/src/ops/op2d.cpp index abd899cc5..7987c51f9 100644 --- a/src/ops/op2d.cpp +++ b/src/ops/op2d.cpp @@ -4,7 +4,7 @@ op2.cpp - Plugin to adds 2D coordinates using RDKit routines Copyright (C) 2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/optransform.cpp b/src/ops/optransform.cpp index 911954941..317601ca2 100644 --- a/src/ops/optransform.cpp +++ b/src/ops/optransform.cpp @@ -3,7 +3,7 @@ optransform.cpp: makes option to transform molecule as specified in a datafile Copyright (C) 2008 Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/partialcharges.cpp b/src/ops/partialcharges.cpp index 02b736351..3e096f2da 100644 --- a/src/ops/partialcharges.cpp +++ b/src/ops/partialcharges.cpp @@ -4,7 +4,7 @@ partialcharges.cpp - The option --partialcharges (type) adds charges using diffe Copyright(C) 2010 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/readconformers.cpp b/src/ops/readconformers.cpp index e415f8531..d0469f13c 100644 --- a/src/ops/readconformers.cpp +++ b/src/ops/readconformers.cpp @@ -4,7 +4,7 @@ read-conformers.cpp - A OBOp for combining conformers during conversion. Copyright (C) 2010 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/sort.cpp b/src/ops/sort.cpp index dffe39886..9ceefda4f 100644 --- a/src/ops/sort.cpp +++ b/src/ops/sort.cpp @@ -4,7 +4,7 @@ sort.cpp - A OBOp for sorting molecules during conversion. Copyright (C) 2009 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/unique.cpp b/src/ops/unique.cpp index 22efbb8c1..805f33296 100644 --- a/src/ops/unique.cpp +++ b/src/ops/unique.cpp @@ -4,7 +4,7 @@ unique.cpp - A OBOp for eliminating chemically identical molecules during conver Copyright (C) 2009 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ops/xout.cpp b/src/ops/xout.cpp index c2db90785..eb90f7b63 100644 --- a/src/ops/xout.cpp +++ b/src/ops/xout.cpp @@ -4,7 +4,7 @@ xout.cpp - OpExtraOut to write a OBBase object additionally to a file Copyright (C) 2009 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/parsmart.cpp b/src/parsmart.cpp index a1332f376..41b8195dd 100644 --- a/src/parsmart.cpp +++ b/src/parsmart.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -47,7 +47,7 @@ namespace OpenBabel matching in Open Babel. For more information on the SMARTS support in Open Babel, see the wiki page: - http://openbabel.sourceforge.net/wiki/SMARTS + http://openbabel.org/wiki/SMARTS The SMARTS matcher, or OBSmartsPattern, is a separate object which can match patterns in the OBMol class. The following code demonstrates how diff --git a/src/patty.cpp b/src/patty.cpp index 8a1f2a7a0..20999c04f 100644 --- a/src/patty.cpp +++ b/src/patty.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/phmodel.cpp b/src/phmodel.cpp index 948a7c6f4..e7e18a269 100644 --- a/src/phmodel.cpp +++ b/src/phmodel.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2005 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/plugin.cpp b/src/plugin.cpp index e242ab14b..b677452b3 100644 --- a/src/plugin.cpp +++ b/src/plugin.cpp @@ -4,7 +4,7 @@ plugin.cpp - facilitates construction of plugin classes Copyright (C) 2007 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/pointgroup.cpp b/src/pointgroup.cpp index 368cb6516..f28ff11f5 100644 --- a/src/pointgroup.cpp +++ b/src/pointgroup.cpp @@ -6,7 +6,7 @@ pointgroup.cpp - Brute force symmetry analyzer. (Ported to C++, integrated with Open Babel) This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/rand.cpp b/src/rand.cpp index 220104336..2ac9831fa 100644 --- a/src/rand.cpp +++ b/src/rand.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/residue.cpp b/src/residue.cpp index 6f5892e63..68a790862 100644 --- a/src/residue.cpp +++ b/src/residue.cpp @@ -5,7 +5,7 @@ Copyright (C) 2001, 2002 OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/ring.cpp b/src/ring.cpp index c8d2f0510..2d1451786 100644 --- a/src/ring.cpp +++ b/src/ring.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/rotamer.cpp b/src/rotamer.cpp index 1ed8bd176..cfd9b326a 100644 --- a/src/rotamer.cpp +++ b/src/rotamer.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998, 1999, 2000-2002 OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/rotor.cpp b/src/rotor.cpp index 80c1d7b9d..2c3178824 100644 --- a/src/rotor.cpp +++ b/src/rotor.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2000 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/spectrophore.cpp b/src/spectrophore.cpp index 82a8f89f1..74dd3afc7 100644 --- a/src/spectrophore.cpp +++ b/src/spectrophore.cpp @@ -4,7 +4,7 @@ Spectrophore.cpp - Spectrophore(TM) calculator Copyright (C) 2005-2010 by Silicos NV This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/stereo/facade.cpp b/src/stereo/facade.cpp index 939d5e301..cb5532f17 100644 --- a/src/stereo/facade.cpp +++ b/src/stereo/facade.cpp @@ -4,7 +4,7 @@ Copyright (C) 2009 by Tim Vandermeersch This file is part of the Open Babel project. - For more information, see + For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/stereo/perception.cpp b/src/stereo/perception.cpp index 110f47108..aba8e4916 100644 --- a/src/stereo/perception.cpp +++ b/src/stereo/perception.cpp @@ -4,7 +4,7 @@ Copyright (C) 2009-2010 by Tim Vandermeersch This file is part of the Open Babel project. - For more information, see + For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/stereo/stereo.cpp b/src/stereo/stereo.cpp index 6df0b9366..9f601e181 100644 --- a/src/stereo/stereo.cpp +++ b/src/stereo/stereo.cpp @@ -4,7 +4,7 @@ Copyright (C) 2009 by Tim Vandermeersch This file is part of the Open Babel project. - For more information, see + For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/stereo/tetrahedral.cpp b/src/stereo/tetrahedral.cpp index e9c540305..44adef626 100644 --- a/src/stereo/tetrahedral.cpp +++ b/src/stereo/tetrahedral.cpp @@ -4,7 +4,7 @@ Copyright (C) 2009 by Tim Vandermeersch This file is part of the Open Babel project. - For more information, see + For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/stereo/tetranonplanar.cpp b/src/stereo/tetranonplanar.cpp index 8dacc6af1..cbca2d89a 100644 --- a/src/stereo/tetranonplanar.cpp +++ b/src/stereo/tetranonplanar.cpp @@ -4,7 +4,7 @@ Copyright (C) 2009 by Tim Vandermeersch This file is part of the Open Babel project. - For more information, see + For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/stereo/tetraplanar.cpp b/src/stereo/tetraplanar.cpp index 8f4d2361a..b994223d1 100644 --- a/src/stereo/tetraplanar.cpp +++ b/src/stereo/tetraplanar.cpp @@ -4,7 +4,7 @@ Copyright (C) 2009 by Tim Vandermeersch This file is part of the Open Babel project. - For more information, see + For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/tokenst.cpp b/src/tokenst.cpp index 900c20fa8..d429158c9 100644 --- a/src/tokenst.cpp +++ b/src/tokenst.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/transform.cpp b/src/transform.cpp index 52cccba2a..00e9b8a67 100644 --- a/src/transform.cpp +++ b/src/transform.cpp @@ -4,7 +4,7 @@ transform.cpp - Perform command-line requested transformations Copyright (C) 2004-2005 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/src/typer.cpp b/src/typer.cpp index 92f03b202..dac5e9e3f 100644 --- a/src/typer.cpp +++ b/src/typer.cpp @@ -5,7 +5,7 @@ Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/aromatest.cpp b/test/aromatest.cpp index 19b17bd0e..2e2fd22f3 100644 --- a/test/aromatest.cpp +++ b/test/aromatest.cpp @@ -4,7 +4,7 @@ aromatest.cpp - Test Open Babel aromaticity perception Copyright (C) 2005-2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/atom.cpp b/test/atom.cpp index d93e641bd..a7a16097d 100644 --- a/test/atom.cpp +++ b/test/atom.cpp @@ -4,7 +4,7 @@ atom.cpp - Unit tests for Open Babel OBAtom class Copyright (C) 2005-2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/bond.cpp b/test/bond.cpp index 3fcfd1ad7..7ba1197a7 100644 --- a/test/bond.cpp +++ b/test/bond.cpp @@ -4,7 +4,7 @@ bond.cpp - Unit tests for Open Babel OBBond class Copyright (C) 2005-2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/cansmi.cpp b/test/cansmi.cpp index 1c239d787..e474c022e 100644 --- a/test/cansmi.cpp +++ b/test/cansmi.cpp @@ -2,7 +2,7 @@ cansmi.cpp - Test Canonical SMILES generation -- write and then read This file is part of the Open Babel project. - For more information, see + For more information, see Copyright (C) 2001-2007 Geoffrey R. Hutchison diff --git a/test/cmlreadfile.cpp b/test/cmlreadfile.cpp index f7d3553e1..ec2740e59 100644 --- a/test/cmlreadfile.cpp +++ b/test/cmlreadfile.cpp @@ -4,7 +4,7 @@ mol.cpp - Unit tests for Open Babel OBMol class Copyright (C) 2005-2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/conversion.cpp b/test/conversion.cpp index 16ced1387..dba572634 100644 --- a/test/conversion.cpp +++ b/test/conversion.cpp @@ -4,7 +4,7 @@ conversion.cpp - Unit tests for Open Babel OBConversion class Copyright (C) 2005-2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/datatest.cpp b/test/datatest.cpp index 8d7c20c24..4d58f6fc1 100644 --- a/test/datatest.cpp +++ b/test/datatest.cpp @@ -4,7 +4,7 @@ data.cpp - Unit tests for Open Babel data classes Copyright (C) 2005-2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/ffgaff.cpp b/test/ffgaff.cpp index 1717815f5..51a4012ce 100644 --- a/test/ffgaff.cpp +++ b/test/ffgaff.cpp @@ -2,7 +2,7 @@ ffgaff.cpp - Test energy and gradients for GAFF force field This file is part of the Open Babel project. -For more information, see +For more information, see Some portions Copyright (C) 2008 Geoffrey R. Hutchison diff --git a/test/ffghemical.cpp b/test/ffghemical.cpp index bcecd0c72..119879bc5 100644 --- a/test/ffghemical.cpp +++ b/test/ffghemical.cpp @@ -2,7 +2,7 @@ ffghemical.cpp - Test energy and gradients for Ghemical force field This file is part of the Open Babel project. -For more information, see +For more information, see Some portions Copyright (C) 2008 Geoffrey R. Hutchison diff --git a/test/ffmmff94.cpp b/test/ffmmff94.cpp index 83a7cf27e..143759161 100644 --- a/test/ffmmff94.cpp +++ b/test/ffmmff94.cpp @@ -2,7 +2,7 @@ ffmmff94.cpp - Test energy and gradients for MMFF94 force field This file is part of the Open Babel project. -For more information, see +For more information, see Some portions Copyright (C) 2008 Geoffrey R. Hutchison diff --git a/test/ffuff.cpp b/test/ffuff.cpp index 344222d93..83b48c25a 100644 --- a/test/ffuff.cpp +++ b/test/ffuff.cpp @@ -2,7 +2,7 @@ ffuff.cpp - Test energy and gradients for UFF force field This file is part of the Open Babel project. -For more information, see +For more information, see Some portions Copyright (C) 2008 Geoffrey R. Hutchison diff --git a/test/formalcharge.cpp b/test/formalcharge.cpp index d76153d75..ea1ae0d08 100644 --- a/test/formalcharge.cpp +++ b/test/formalcharge.cpp @@ -2,7 +2,7 @@ formalcharge.cpp - Test molecular formal charge perception This file is part of the Open Babel project. -For more information, see +For more information, see Some portions Copyright (C) 2005-2006 Geoffrey R. Hutchison diff --git a/test/format.cpp b/test/format.cpp index ccaecdf3c..c5790f614 100644 --- a/test/format.cpp +++ b/test/format.cpp @@ -4,7 +4,7 @@ format.cpp - Unit tests for Open Babel OBFormat class Copyright (C) 2005-2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/formula.cpp b/test/formula.cpp index cfc01f32d..41d50c328 100644 --- a/test/formula.cpp +++ b/test/formula.cpp @@ -2,7 +2,7 @@ formula.cpp - Test molecular formula, weight & exact mass This file is part of the Open Babel project. -For more information, see +For more information, see Some portions Copyright (C) 2005-2006 Geoffrey R. Hutchison diff --git a/test/inchiwrite.cpp b/test/inchiwrite.cpp index 377c84aea..b319ec3b3 100644 --- a/test/inchiwrite.cpp +++ b/test/inchiwrite.cpp @@ -2,7 +2,7 @@ inchiwrite.cpp - tests for writing InChIs This file is part of the Open Babel project. - For more information, see + For more information, see Copyright (C) 2007 by Chris Morley diff --git a/test/internalcoord.cpp b/test/internalcoord.cpp index 47ec43135..2abadc9ff 100644 --- a/test/internalcoord.cpp +++ b/test/internalcoord.cpp @@ -4,7 +4,7 @@ internalcoord.cpp - Unit tests for Open Babel OBInternalCoord class Copyright (C) 2005-2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/invalidsmarts.cpp b/test/invalidsmarts.cpp index 36ea873be..0f84bf4fc 100644 --- a/test/invalidsmarts.cpp +++ b/test/invalidsmarts.cpp @@ -2,7 +2,7 @@ invalid-smarts.cpp - Test SMARTS pattern parsing (rejecting invalid patterns) This file is part of the Open Babel project. -For more information, see +For more information, see Some portions Copyright (C) 2005-2006 Geoffrey R. Hutchison diff --git a/test/invalidsmiles.cpp b/test/invalidsmiles.cpp index f6f0a0382..add3354ca 100644 --- a/test/invalidsmiles.cpp +++ b/test/invalidsmiles.cpp @@ -2,7 +2,7 @@ invalid-smiles.cpp - Test SMILES pattern parsing (rejecting invalid patterns) This file is part of the Open Babel project. -For more information, see +For more information, see Some portions Copyright (C) 2005-2006 Geoffrey R. Hutchison diff --git a/test/iterators.cpp b/test/iterators.cpp index d7113e7d3..629e28dc4 100644 --- a/test/iterators.cpp +++ b/test/iterators.cpp @@ -2,7 +2,7 @@ iterators.cpp - tests for iterators This file is part of the Open Babel project. - For more information, see + For more information, see Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2005 Geoffrey R. Hutchison diff --git a/test/logp_psa.cpp b/test/logp_psa.cpp index 8f62ed49b..4656e90a7 100644 --- a/test/logp_psa.cpp +++ b/test/logp_psa.cpp @@ -4,7 +4,7 @@ logppsa.cpp - Unit tests for Open Babel OBLogP and OBPSA class Copyright (C) 2007 Tim Vandermmeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/math.cpp b/test/math.cpp index 9aac50368..443d1863b 100644 --- a/test/math.cpp +++ b/test/math.cpp @@ -6,7 +6,7 @@ Copyright (C) 2001-2006 Geoffrey R. Hutchison Copyright (C) 2006 Benoit Jacob This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/mmff94validate.cpp b/test/mmff94validate.cpp index 2ad537a5e..696e2adb1 100644 --- a/test/mmff94validate.cpp +++ b/test/mmff94validate.cpp @@ -22,7 +22,7 @@ obmmff94validate.cpp - Validate the MMFF94 implementation Copyright (C) 2006 Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/mol.cpp b/test/mol.cpp index 2a0d92df1..523f01466 100644 --- a/test/mol.cpp +++ b/test/mol.cpp @@ -4,7 +4,7 @@ mol.cpp - Unit tests for Open Babel OBMol class Copyright (C) 2005-2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/phmodel.cpp b/test/phmodel.cpp index b15f3c877..c77cca51a 100644 --- a/test/phmodel.cpp +++ b/test/phmodel.cpp @@ -4,7 +4,7 @@ phmodel.cpp - Unit tests for Open Babel OBPhModel class Copyright (C) 2008 Tim Vandermmeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/residue.cpp b/test/residue.cpp index 68db8eb7a..21dd523a3 100644 --- a/test/residue.cpp +++ b/test/residue.cpp @@ -4,7 +4,7 @@ residue.cpp - Unit tests for Open Babel OBResidue class Copyright (C) 2005-2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/ringtest.cpp b/test/ringtest.cpp index 10a39e84c..50ae74ba2 100644 --- a/test/ringtest.cpp +++ b/test/ringtest.cpp @@ -2,7 +2,7 @@ ringtest.cpp - Test ring perception algorithms. This file is part of the Open Babel project. -For more information, see +For more information, see Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2005 Geoffrey R. Hutchison diff --git a/test/roundtrip.cpp b/test/roundtrip.cpp index 242274102..4331713e9 100644 --- a/test/roundtrip.cpp +++ b/test/roundtrip.cpp @@ -5,7 +5,7 @@ roundtrip.cpp - Test "roundtrip" results for converting from one molec. format Copyright (C) 2003-2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/smartsparse.cpp b/test/smartsparse.cpp index 6819263e9..4ff98c69f 100644 --- a/test/smartsparse.cpp +++ b/test/smartsparse.cpp @@ -2,7 +2,7 @@ smartsparse.cpp - Test SMARTS parsing for valid patterns This file is part of the Open Babel project. - For more information, see + For more information, see Copyright (C) 2010 by Geoffrey R. Hutchison diff --git a/test/smartstest.cpp b/test/smartstest.cpp index fe8b34d16..4275e7ca4 100644 --- a/test/smartstest.cpp +++ b/test/smartstest.cpp @@ -2,7 +2,7 @@ smartstest.cpp - Test SMARTS algorithms and atom typing. This file is part of the Open Babel project. - For more information, see + For more information, see Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2005 Geoffrey R. Hutchison diff --git a/test/smilesmatch.cpp b/test/smilesmatch.cpp index 8f0c26a6f..38784bbb1 100644 --- a/test/smilesmatch.cpp +++ b/test/smilesmatch.cpp @@ -2,7 +2,7 @@ smilesmatch.cpp - Test SMARTS matching (i.e., SMILES matching themselves) This file is part of the Open Babel project. - For more information, see + For more information, see Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. Some portions Copyright (C) 2001-2005 Geoffrey R. Hutchison diff --git a/test/strip.cpp b/test/strip.cpp index 137565b19..15be5a630 100644 --- a/test/strip.cpp +++ b/test/strip.cpp @@ -2,7 +2,7 @@ strip.cpp - Test OBMol::StripSalts and friends This file is part of the Open Babel project. -For more information, see +For more information, see Copyright (C) 2009 Geoffrey R. Hutchison diff --git a/test/unitcell.cpp b/test/unitcell.cpp index ea7d556a7..318684279 100644 --- a/test/unitcell.cpp +++ b/test/unitcell.cpp @@ -2,7 +2,7 @@ Copyright (C) 2003-2005 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/test/zipstream.cpp b/test/zipstream.cpp index de72ebd1c..b0205caa4 100644 --- a/test/zipstream.cpp +++ b/test/zipstream.cpp @@ -2,7 +2,7 @@ zipstream.cpp - Test compressed file reading of molecules This file is part of the Open Babel project. - For more information, see + For more information, see Copyright (C) 2001-2009 Geoffrey R. Hutchison diff --git a/tools/babel.cpp b/tools/babel.cpp index 7b1523413..f6dc27908 100644 --- a/tools/babel.cpp +++ b/tools/babel.cpp @@ -6,7 +6,7 @@ Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison Some portions Copyright (C) 2004-2006 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -476,7 +476,7 @@ void help() * * Note that Open Babel can also be used as a library to interconvert * many file formats and to provide standard chemistry software routines. -* See the Open Babel web pages (http://openbabel.sourceforge.net) for more +* See the Open Babel web pages (http://openbabel.org) for more * information. * * \par OPTIONS @@ -606,7 +606,7 @@ void help() * * Open Babel is currently maintained by \b Geoff \b Hutchison, \b Chris \b Morley and \b Michael \b Banck. * -* For more contributors to Open Babel, see http://openbabel.sourceforge.net/THANKS.shtml +* For more contributors to Open Babel, see http://openbabel.org/THANKS.shtml * * \par COPYRIGHT * Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. @@ -620,5 +620,5 @@ void help() * GNU General Public License for more details. * * \par SEE ALSO -* The web pages for Open Babel can be found at http://openbabel.sourceforge.net/ +* The web pages for Open Babel can be found at http://openbabel.org/ **/ diff --git a/tools/obabel.cpp b/tools/obabel.cpp index 8c6dd195e..e8be20f50 100644 --- a/tools/obabel.cpp +++ b/tools/obabel.cpp @@ -6,7 +6,7 @@ Some portions Copyright (C) 2001-2006 by Geoffrey R. Hutchison Some portions Copyright (C) 2004-2010 by Chris Morley This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -483,7 +483,7 @@ void help() * * Note that Open Babel can also be used as a library to interconvert * many file formats and to provide standard chemistry software routines. -* See the Open Babel web pages (http://openbabel.sourceforge.net) for more +* See the Open Babel web pages (http://openbabel.org) for more * information. * * \par OPTIONS @@ -613,7 +613,7 @@ void help() * * Open Babel is currently maintained by \b Geoff \b Hutchison, \b Chris \b Morley and \b Michael \b Banck. * -* For more contributors to Open Babel, see http://openbabel.sourceforge.net/THANKS.shtml +* For more contributors to Open Babel, see http://openbabel.org/THANKS.shtml * * \par COPYRIGHT * Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. @@ -627,5 +627,5 @@ void help() * GNU General Public License for more details. * * \par SEE ALSO -* The web pages for Open Babel can be found at http://openbabel.sourceforge.net/ +* The web pages for Open Babel can be found at http://openbabel.org/ **/ diff --git a/tools/obchiral.cpp b/tools/obchiral.cpp index adc9afc56..9feac1783 100644 --- a/tools/obchiral.cpp +++ b/tools/obchiral.cpp @@ -4,7 +4,7 @@ OBChiral Copyright 2005 - Nick England This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -183,7 +183,7 @@ int main(int argc,char **argv) * * Open Babel is currently maintained by \b Geoff \b Hutchison, \b Chris \b Morley and \b Michael \b Banck. * -* For more contributors to Open Babel, see http://openbabel.sourceforge.net/THANKS.shtml +* For more contributors to Open Babel, see http://openbabel.org/THANKS.shtml * * \par COPYRIGHT * Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. @@ -197,5 +197,5 @@ int main(int argc,char **argv) * GNU General Public License for more details. * * \par SEE ALSO -* The web pages for Open Babel can be found at: http://openbabel.sourceforge.net/ \n +* The web pages for Open Babel can be found at: http://openbabel.org/ \n **/ diff --git a/tools/obconformer.cpp b/tools/obconformer.cpp index 3143e6413..5e55f63a5 100644 --- a/tools/obconformer.cpp +++ b/tools/obconformer.cpp @@ -4,7 +4,7 @@ obconformer.cpp - Run a Monte Carlo conformer search for a molecule Copyright (C) 2005-2007 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/tools/obdoc.cpp b/tools/obdoc.cpp index 8d977f391..67ce4bed3 100644 --- a/tools/obdoc.cpp +++ b/tools/obdoc.cpp @@ -4,7 +4,7 @@ obdoc - Automatically generate documentation database for file formats Copyright (C) 2005 by Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/tools/obenergy.cpp b/tools/obenergy.cpp index 0f1537143..c6f70c04a 100644 --- a/tools/obenergy.cpp +++ b/tools/obenergy.cpp @@ -4,7 +4,7 @@ obenergy.cpp - calculate the energy for a molecule Copyright (C) 2006 Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -187,7 +187,7 @@ int main(int argc,char **argv) * * Open Babel is currently maintained by \b Geoff \b Hutchison, \b Chris \b Morley and \b Michael \b Banck. * -* For more contributors to Open Babel, see http://openbabel.sourceforge.net/THANKS.shtml +* For more contributors to Open Babel, see http://openbabel.org/THANKS.shtml * * \par COPYRIGHT * Copyright (C) 2007 by Tim Vandermeersch. \n \n @@ -200,7 +200,7 @@ int main(int argc,char **argv) * GNU General Public License for more details. * * \par SEE ALSO -* The web pages for Open Babel can be found at: http://openbabel.sourceforge.net/ \n +* The web pages for Open Babel can be found at: http://openbabel.org/ \n * The web pages for Open Babel Molecular Mechanics can be found at: -* http://openbabel.sourceforge.net/wiki/Molecular_mechanics \n +* http://openbabel.org/wiki/Molecular_mechanics \n **/ diff --git a/tools/obfit.cpp b/tools/obfit.cpp index 2f7dcaeca..4872b9129 100644 --- a/tools/obfit.cpp +++ b/tools/obfit.cpp @@ -4,7 +4,7 @@ Copyright (C) 2003 Fabien Fontaine Some portions Copyright (C) 2004-2005 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -387,7 +387,7 @@ vector3 mass_c( vector &aindex, OBMol &mol) * * Open Babel is currently maintained by \b Geoff \b Hutchison, \b Chris \b Morley and \b Michael \b Banck. * -* For more contributors to Open Babel, see http://openbabel.sourceforge.net/THANKS.shtml +* For more contributors to Open Babel, see http://openbabel.org/THANKS.shtml * * \par COPYRIGHT * Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. @@ -401,6 +401,6 @@ vector3 mass_c( vector &aindex, OBMol &mol) * GNU General Public License for more details. * * \par SEE ALSO -* The web pages for Open Babel can be found at http://openbabel.sourceforge.net/ \n +* The web pages for Open Babel can be found at http://openbabel.org/ \n * A guide for constructing SMARTS patterns can be found at http://www.daylight.com/dayhtml/doc/theory/theory.smarts.html **/ diff --git a/tools/obfragment.cpp b/tools/obfragment.cpp index cd98d22cf..f2519214d 100644 --- a/tools/obfragment.cpp +++ b/tools/obfragment.cpp @@ -4,7 +4,7 @@ obfragment - Generate coordinate database of ring fragments Copyright (C) 2007 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -252,4 +252,4 @@ string RewriteSMILES(const string smiles) // (i.e., unlikely to be top ring fragment hits) return fragment; -} \ No newline at end of file +} diff --git a/tools/obgen.cpp b/tools/obgen.cpp index 689f7c748..01369678d 100644 --- a/tools/obgen.cpp +++ b/tools/obgen.cpp @@ -6,7 +6,7 @@ Copyright (C) 2006 Tim Vandermeersch Some portions Copyright (C) 2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/tools/obgrep.cpp b/tools/obgrep.cpp index 103954473..19f96f754 100644 --- a/tools/obgrep.cpp +++ b/tools/obgrep.cpp @@ -5,7 +5,7 @@ Copyright (C) 2003 Fabien Fontaine Some portions Copyright (C) 2004-2005 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -337,7 +337,7 @@ int main(int argc,char **argv) * * Open Babel is currently maintained by \b Geoff \b Hutchison, \b Chris \b Morley and \b Michael \b Banck. * -* For more contributors to Open Babel, see http://openbabel.sourceforge.net/THANKS.shtml +* For more contributors to Open Babel, see http://openbabel.org/THANKS.shtml * * \par COPYRIGHT * Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. @@ -351,6 +351,6 @@ int main(int argc,char **argv) * GNU General Public License for more details. * * \par SEE ALSO -* The web pages for Open Babel can be found at: http://openbabel.sourceforge.net/ \n +* The web pages for Open Babel can be found at: http://openbabel.org/ \n * A guide for constructing SMARTS patterns can be found at: http://www.daylight.com/dayhtml/doc/theory/theory.smarts.html **/ diff --git a/tools/obminimize.cpp b/tools/obminimize.cpp index 9dfbab45b..649fb3d75 100644 --- a/tools/obminimize.cpp +++ b/tools/obminimize.cpp @@ -5,7 +5,7 @@ Copyright (C) 2006 Tim Vandermeersch Some portions Copyright (C) 2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -287,7 +287,7 @@ int main(int argc,char **argv) * * Open Babel is currently maintained by \b Geoff \b Hutchison, \b Chris \b Morley and \b Michael \b Banck. * -* For more contributors to Open Babel, see http://openbabel.sourceforge.net/THANKS.shtml +* For more contributors to Open Babel, see http://openbabel.org/THANKS.shtml * * \par COPYRIGHT * Copyright (C) 2007 by Tim Vandermeersch. \n \n @@ -300,7 +300,7 @@ int main(int argc,char **argv) * GNU General Public License for more details. * * \par SEE ALSO -* The web pages for Open Babel can be found at: http://openbabel.sourceforge.net/ \n +* The web pages for Open Babel can be found at: http://openbabel.org/ \n * The web pages for Open Babel Molecular Mechanics can be found at: -* http://openbabel.sourceforge.net/wiki/Molecular_mechanics \n +* http://openbabel.org/wiki/Molecular_mechanics \n **/ diff --git a/tools/obmm.cpp b/tools/obmm.cpp index 7ceadc332..3e5547f85 100644 --- a/tools/obmm.cpp +++ b/tools/obmm.cpp @@ -33,7 +33,7 @@ Copyright (C) 2006 Tim Vandermeersch Some portions Copyright (C) 2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/tools/obprobe.cpp b/tools/obprobe.cpp index badb00f64..aa2ab3ab3 100644 --- a/tools/obprobe.cpp +++ b/tools/obprobe.cpp @@ -7,7 +7,7 @@ obprobe.cpp - This program will create a grid around a molecule, place Copyright (C) 2006 Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/tools/obprop.cpp b/tools/obprop.cpp index e3445e280..af64b452a 100644 --- a/tools/obprop.cpp +++ b/tools/obprop.cpp @@ -5,7 +5,7 @@ Copyright (C) 2003 Fabien Fontaine Some portions Copyright (C) 2004-2007 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -252,7 +252,7 @@ string sequence(OBMol &mol) * * Open Babel is currently maintained by \b Geoff \b Hutchison, \b Chris \b Morley and \b Michael \b Banck. * -* For more contributors to Open Babel, see http://openbabel.sourceforge.net/THANKS.shtml +* For more contributors to Open Babel, see http://openbabel.org/THANKS.shtml * * \par COPYRIGHT * Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. @@ -266,5 +266,5 @@ string sequence(OBMol &mol) * GNU General Public License for more details. * * \par SEE ALSO -* The web pages for Open Babel can be found at: http://openbabel.sourceforge.net/ \n +* The web pages for Open Babel can be found at: http://openbabel.org/ \n **/ diff --git a/tools/obrotamer.cpp b/tools/obrotamer.cpp index e0e013b08..9b4b531a1 100644 --- a/tools/obrotamer.cpp +++ b/tools/obrotamer.cpp @@ -4,7 +4,7 @@ obrotamer.cpp - Generate a random rotamer for a given molecule Copyright (C) 2005-2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/tools/obrotate.cpp b/tools/obrotate.cpp index 624a9543c..9144f8f79 100644 --- a/tools/obrotate.cpp +++ b/tools/obrotate.cpp @@ -5,7 +5,7 @@ Some portions Copyright (C) 2004-2005 Geoffrey R. Hutchison Some portions Copyright (C) 2008 Tim Vandermeersch This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -212,7 +212,7 @@ int main(int argc,char **argv) * * Open Babel is currently maintained by \b Geoff \b Hutchison, \b Chris \b Morley and \b Michael \b Banck. * -* For more contributors to Open Babel, see http://openbabel.sourceforge.net/THANKS.shtml +* For more contributors to Open Babel, see http://openbabel.org/THANKS.shtml * * \par COPYRIGHT * Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. @@ -226,6 +226,6 @@ int main(int argc,char **argv) * GNU General Public License for more details. * * \par SEE ALSO -* The web pages for Open Babel can be found at: http://openbabel.sourceforge.net/ \n +* The web pages for Open Babel can be found at: http://openbabel.org/ \n * A guide for constructing SMARTS patterns can be found at: http://www.daylight.com/dayhtml/doc/theory/theory.smarts.html **/ diff --git a/tools/obseq.cpp b/tools/obseq.cpp index 7f3b67244..b63760faa 100644 --- a/tools/obseq.cpp +++ b/tools/obseq.cpp @@ -4,7 +4,7 @@ obseq.cpp - Output residue sequence information for biomolecules Copyright (C) 2005-2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/tools/obspectrophore.cpp b/tools/obspectrophore.cpp index 3d72e0e2f..191c62e4d 100644 --- a/tools/obspectrophore.cpp +++ b/tools/obspectrophore.cpp @@ -464,7 +464,7 @@ showHelp(const char* cmd) std::cout << "Copyright (C) 2005-2010 by Silicos NV" << std::endl; std::cout << std::endl; std::cout << "This program and file are part of the Open Babel project." << std::endl; - std::cout << "For more information, see " << std::endl; + std::cout << "For more information, see " << std::endl; std::cout << std::endl; std::cout << "This program is free software; you can redistribute it and/or modify" << std::endl; std::cout << "it under the terms of the GNU General Public License as published by" << std::endl; @@ -546,7 +546,7 @@ showImplementationDetails(const char* cmd) std::cout << "Copyright (C) 2005-2010 by Silicos NV" << std::endl; std::cout << std::endl; std::cout << "This program and file are part of the Open Babel project." << std::endl; - std::cout << "For more information, see " << std::endl; + std::cout << "For more information, see " << std::endl; std::cout << std::endl; std::cout << "This program is free software; you can redistribute it and/or modify" << std::endl; std::cout << "it under the terms of the GNU General Public License as published by" << std::endl; diff --git a/tools/obsym.cpp b/tools/obsym.cpp index b88745801..8e43c70b8 100644 --- a/tools/obsym.cpp +++ b/tools/obsym.cpp @@ -5,7 +5,7 @@ Copyright (C) 2007 Geoffrey R. Hutchison Based on code (C) 1996,2003 by S. Patchkovskii This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -154,7 +154,7 @@ string sequence(OBMol &mol) * * Open Babel is currently maintained by \b Geoff \b Hutchison, \b Chris \b Morley and \b Michael \b Banck. * -* For more contributors to Open Babel, see http://openbabel.sourceforge.net/THANKS.shtml +* For more contributors to Open Babel, see http://openbabel.org/THANKS.shtml * * \par COPYRIGHT * Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. @@ -168,5 +168,5 @@ string sequence(OBMol &mol) * GNU General Public License for more details. * * \par SEE ALSO -* The web pages for Open Babel can be found at: http://openbabel.sourceforge.net/ \n +* The web pages for Open Babel can be found at: http://openbabel.org/ \n **/ diff --git a/tools/obxyz.cpp b/tools/obxyz.cpp index 02e51d2f0..d4a8501f1 100644 --- a/tools/obxyz.cpp +++ b/tools/obxyz.cpp @@ -4,7 +4,7 @@ obxyz - Open Babel XYZ transformations Copyright (C) 2001-2006 Geoffrey R. Hutchison This file is part of the Open Babel project. -For more information, see +For more information, see This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by diff --git a/windows-vc2008/Distribution/NSISScriptToCreateInstaller.nsi b/windows-vc2008/Distribution/NSISScriptToCreateInstaller.nsi index a9ec62f48..f486872f5 100644 --- a/windows-vc2008/Distribution/NSISScriptToCreateInstaller.nsi +++ b/windows-vc2008/Distribution/NSISScriptToCreateInstaller.nsi @@ -484,7 +484,7 @@ FunctionEnd !define MUI_HEADERIMAGE_BITMAP "logo_small.bmp" !define MUI_WELCOMEFINISHPAGE_BITMAP "logo_big.bmp" !define MUI_FINISHPAGE_RUN "$INSTDIR/OBGUI.exe" -; !define MUI_FINISHPAGE_SHOWREADME "http://openbabel.sourceforge.net/wiki/OpenBabelGUI" +; !define MUI_FINISHPAGE_SHOWREADME "http://openbabel.org/wiki/OpenBabelGUI" ;-------------------------------- ;Pages