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* src/atom.h, src/base.h, src/bond.h, src/residue.h, src/mol.h,

Browse Source 
src/ring.h, src/mol.cpp, src/base.cpp, src/obiter.h: Remove
  OBNodeBase, OBEdgeBase, and OBGraphBase classes, contributed by
  Gerd Menche.

  * tools/obprop.cpp: Ditto. Example of changing iterators to new format.

  * scripts/*: Updated based on above changes.
This commit is contained in:
Geoffrey Hutchison
2006-11-20 18:43:41 +00:00
parent 0fd1813a26
commit 8dad311517
88 changed files with 43343 additions and 16533 deletions
Download Patch File Download Diff File Expand all files Collapse all files
scripts/java/OBMessageHandler.java
+23 -23
View File
@@ -27,98 +27,98 @@ public class OBMessageHandler {
public synchronized void delete() {
if(swigCPtr != 0 && swigCMemOwn) {
swigCMemOwn = false;
net.sourceforge.openbabelJNI.delete_OBMessageHandler(swigCPtr);
openbabelJNI.delete_OBMessageHandler(swigCPtr);
}
swigCPtr = 0;
}
public OBMessageHandler() {
this(net.sourceforge.openbabelJNI.new_OBMessageHandler(), true);
this(openbabelJNI.new_OBMessageHandler(), true);
}
public void ThrowError(OBError err) {
net.sourceforge.openbabelJNI.OBMessageHandler_ThrowError__SWIG_0(swigCPtr, this, OBError.getCPtr(err), err);
openbabelJNI.OBMessageHandler_ThrowError__SWIG_0(swigCPtr, this, OBError.getCPtr(err), err);
}
public void ThrowError(String method, String errorMsg, obMessageLevel level) {
net.sourceforge.openbabelJNI.OBMessageHandler_ThrowError__SWIG_1(swigCPtr, this, method, errorMsg, level.swigValue());
openbabelJNI.OBMessageHandler_ThrowError__SWIG_1(swigCPtr, this, method, errorMsg, level.swigValue());
}
public void ThrowError(String method, String errorMsg) {
net.sourceforge.openbabelJNI.OBMessageHandler_ThrowError__SWIG_2(swigCPtr, this, method, errorMsg);
openbabelJNI.OBMessageHandler_ThrowError__SWIG_2(swigCPtr, this, method, errorMsg);
}
public SWIGTYPE_p_std__vectorTstd__string_t GetMessagesOfLevel(obMessageLevel arg0) {
return new SWIGTYPE_p_std__vectorTstd__string_t(net.sourceforge.openbabelJNI.OBMessageHandler_GetMessagesOfLevel(swigCPtr, this, arg0.swigValue()), true);
return new SWIGTYPE_p_std__vectorTstd__string_t(openbabelJNI.OBMessageHandler_GetMessagesOfLevel(swigCPtr, this, arg0.swigValue()), true);
}
public void StartLogging() {
net.sourceforge.openbabelJNI.OBMessageHandler_StartLogging(swigCPtr, this);
openbabelJNI.OBMessageHandler_StartLogging(swigCPtr, this);
}
public void StopLogging() {
net.sourceforge.openbabelJNI.OBMessageHandler_StopLogging(swigCPtr, this);
openbabelJNI.OBMessageHandler_StopLogging(swigCPtr, this);
}
public void SetMaxLogEntries(long max) {
net.sourceforge.openbabelJNI.OBMessageHandler_SetMaxLogEntries(swigCPtr, this, max);
openbabelJNI.OBMessageHandler_SetMaxLogEntries(swigCPtr, this, max);
}
public long GetMaxLogEntries() {
return net.sourceforge.openbabelJNI.OBMessageHandler_GetMaxLogEntries(swigCPtr, this);
return openbabelJNI.OBMessageHandler_GetMaxLogEntries(swigCPtr, this);
}
public void ClearLog() {
net.sourceforge.openbabelJNI.OBMessageHandler_ClearLog(swigCPtr, this);
openbabelJNI.OBMessageHandler_ClearLog(swigCPtr, this);
}
public void SetOutputLevel(obMessageLevel level) {
net.sourceforge.openbabelJNI.OBMessageHandler_SetOutputLevel(swigCPtr, this, level.swigValue());
openbabelJNI.OBMessageHandler_SetOutputLevel(swigCPtr, this, level.swigValue());
}
public obMessageLevel GetOutputLevel() {
return obMessageLevel.swigToEnum(net.sourceforge.openbabelJNI.OBMessageHandler_GetOutputLevel(swigCPtr, this));
return obMessageLevel.swigToEnum(openbabelJNI.OBMessageHandler_GetOutputLevel(swigCPtr, this));
}
public void SetOutputStream(SWIGTYPE_p_std__ostream os) {
net.sourceforge.openbabelJNI.OBMessageHandler_SetOutputStream(swigCPtr, this, SWIGTYPE_p_std__ostream.getCPtr(os));
openbabelJNI.OBMessageHandler_SetOutputStream(swigCPtr, this, SWIGTYPE_p_std__ostream.getCPtr(os));
}
public SWIGTYPE_p_std__ostream GetOutputStream() {
long cPtr = net.sourceforge.openbabelJNI.OBMessageHandler_GetOutputStream(swigCPtr, this);
long cPtr = openbabelJNI.OBMessageHandler_GetOutputStream(swigCPtr, this);
return (cPtr == 0) ? null : new SWIGTYPE_p_std__ostream(cPtr, false);
}
public boolean StartErrorWrap() {
return net.sourceforge.openbabelJNI.OBMessageHandler_StartErrorWrap(swigCPtr, this);
return openbabelJNI.OBMessageHandler_StartErrorWrap(swigCPtr, this);
}
public boolean StopErrorWrap() {
return net.sourceforge.openbabelJNI.OBMessageHandler_StopErrorWrap(swigCPtr, this);
return openbabelJNI.OBMessageHandler_StopErrorWrap(swigCPtr, this);
}
public long GetErrorMessageCount() {
return net.sourceforge.openbabelJNI.OBMessageHandler_GetErrorMessageCount(swigCPtr, this);
return openbabelJNI.OBMessageHandler_GetErrorMessageCount(swigCPtr, this);
}
public long GetWarningMessageCount() {
return net.sourceforge.openbabelJNI.OBMessageHandler_GetWarningMessageCount(swigCPtr, this);
return openbabelJNI.OBMessageHandler_GetWarningMessageCount(swigCPtr, this);
}
public long GetInfoMessageCount() {
return net.sourceforge.openbabelJNI.OBMessageHandler_GetInfoMessageCount(swigCPtr, this);
return openbabelJNI.OBMessageHandler_GetInfoMessageCount(swigCPtr, this);
}
public long GetAuditMessageCount() {
return net.sourceforge.openbabelJNI.OBMessageHandler_GetAuditMessageCount(swigCPtr, this);
return openbabelJNI.OBMessageHandler_GetAuditMessageCount(swigCPtr, this);
}
public long GetDebugMessageCount() {
return net.sourceforge.openbabelJNI.OBMessageHandler_GetDebugMessageCount(swigCPtr, this);
return openbabelJNI.OBMessageHandler_GetDebugMessageCount(swigCPtr, this);
}
public String GetMessageSummary() {
return net.sourceforge.openbabelJNI.OBMessageHandler_GetMessageSummary(swigCPtr, this);
return openbabelJNI.OBMessageHandler_GetMessageSummary(swigCPtr, this);
}
}