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* src/atom.h, src/base.h, src/bond.h, src/residue.h, src/mol.h,

Browse Source 
src/ring.h, src/mol.cpp, src/base.cpp, src/obiter.h: Remove
  OBNodeBase, OBEdgeBase, and OBGraphBase classes, contributed by
  Gerd Menche.

  * tools/obprop.cpp: Ditto. Example of changing iterators to new format.

  * scripts/*: Updated based on above changes.
This commit is contained in:
Geoffrey Hutchison
2006-11-20 18:43:41 +00:00
parent 0fd1813a26
commit 8dad311517
88 changed files with 43343 additions and 16533 deletions
Download Patch File Download Diff File Expand all files Collapse all files
scripts/java/vector3.java
+25 -25
View File
@@ -27,106 +27,106 @@ public class vector3 {
public synchronized void delete() {
if(swigCPtr != 0 && swigCMemOwn) {
swigCMemOwn = false;
net.sourceforge.openbabelJNI.delete_vector3(swigCPtr);
openbabelJNI.delete_vector3(swigCPtr);
}
swigCPtr = 0;
}
public vector3(double x, double y, double z) {
this(net.sourceforge.openbabelJNI.new_vector3__SWIG_0(x, y, z), true);
this(openbabelJNI.new_vector3__SWIG_0(x, y, z), true);
}
public vector3(double x, double y) {
this(net.sourceforge.openbabelJNI.new_vector3__SWIG_1(x, y), true);
this(openbabelJNI.new_vector3__SWIG_1(x, y), true);
}
public vector3(double x) {
this(net.sourceforge.openbabelJNI.new_vector3__SWIG_2(x), true);
this(openbabelJNI.new_vector3__SWIG_2(x), true);
}
public vector3() {
this(net.sourceforge.openbabelJNI.new_vector3__SWIG_3(), true);
this(openbabelJNI.new_vector3__SWIG_3(), true);
}
public vector3(vector3 v) {
this(net.sourceforge.openbabelJNI.new_vector3__SWIG_4(vector3.getCPtr(v), v), true);
this(openbabelJNI.new_vector3__SWIG_4(vector3.getCPtr(v), v), true);
}
public void Set(double x, double y, double z) {
net.sourceforge.openbabelJNI.vector3_Set__SWIG_0(swigCPtr, this, x, y, z);
openbabelJNI.vector3_Set__SWIG_0(swigCPtr, this, x, y, z);
}
public void Set(SWIGTYPE_p_double c) {
net.sourceforge.openbabelJNI.vector3_Set__SWIG_1(swigCPtr, this, SWIGTYPE_p_double.getCPtr(c));
openbabelJNI.vector3_Set__SWIG_1(swigCPtr, this, SWIGTYPE_p_double.getCPtr(c));
}
public void SetX(double x) {
net.sourceforge.openbabelJNI.vector3_SetX(swigCPtr, this, x);
openbabelJNI.vector3_SetX(swigCPtr, this, x);
}
public void SetY(double y) {
net.sourceforge.openbabelJNI.vector3_SetY(swigCPtr, this, y);
openbabelJNI.vector3_SetY(swigCPtr, this, y);
}
public void SetZ(double z) {
net.sourceforge.openbabelJNI.vector3_SetZ(swigCPtr, this, z);
openbabelJNI.vector3_SetZ(swigCPtr, this, z);
}
public void Get(SWIGTYPE_p_double c) {
net.sourceforge.openbabelJNI.vector3_Get(swigCPtr, this, SWIGTYPE_p_double.getCPtr(c));
openbabelJNI.vector3_Get(swigCPtr, this, SWIGTYPE_p_double.getCPtr(c));
}
public boolean IsApprox(vector3 arg0, double precision) {
return net.sourceforge.openbabelJNI.vector3_IsApprox(swigCPtr, this, vector3.getCPtr(arg0), arg0, precision);
return openbabelJNI.vector3_IsApprox(swigCPtr, this, vector3.getCPtr(arg0), arg0, precision);
}
public SWIGTYPE_p_double AsArray() {
long cPtr = net.sourceforge.openbabelJNI.vector3_AsArray(swigCPtr, this);
long cPtr = openbabelJNI.vector3_AsArray(swigCPtr, this);
return (cPtr == 0) ? null : new SWIGTYPE_p_double(cPtr, false);
}
public void randomUnitVector(OBRandom oeRand) {
net.sourceforge.openbabelJNI.vector3_randomUnitVector__SWIG_0(swigCPtr, this, OBRandom.getCPtr(oeRand), oeRand);
openbabelJNI.vector3_randomUnitVector__SWIG_0(swigCPtr, this, OBRandom.getCPtr(oeRand), oeRand);
}
public void randomUnitVector() {
net.sourceforge.openbabelJNI.vector3_randomUnitVector__SWIG_1(swigCPtr, this);
openbabelJNI.vector3_randomUnitVector__SWIG_1(swigCPtr, this);
}
public vector3 normalize() {
return new vector3(net.sourceforge.openbabelJNI.vector3_normalize(swigCPtr, this), false);
return new vector3(openbabelJNI.vector3_normalize(swigCPtr, this), false);
}
public boolean CanBeNormalized() {
return net.sourceforge.openbabelJNI.vector3_CanBeNormalized(swigCPtr, this);
return openbabelJNI.vector3_CanBeNormalized(swigCPtr, this);
}
public double length() {
return net.sourceforge.openbabelJNI.vector3_length(swigCPtr, this);
return openbabelJNI.vector3_length(swigCPtr, this);
}
public double length_2() {
return net.sourceforge.openbabelJNI.vector3_length_2(swigCPtr, this);
return openbabelJNI.vector3_length_2(swigCPtr, this);
}
public double x() {
return net.sourceforge.openbabelJNI.vector3_x(swigCPtr, this);
return openbabelJNI.vector3_x(swigCPtr, this);
}
public double y() {
return net.sourceforge.openbabelJNI.vector3_y(swigCPtr, this);
return openbabelJNI.vector3_y(swigCPtr, this);
}
public double z() {
return net.sourceforge.openbabelJNI.vector3_z(swigCPtr, this);
return openbabelJNI.vector3_z(swigCPtr, this);
}
public double distSq(vector3 vv) {
return net.sourceforge.openbabelJNI.vector3_distSq(swigCPtr, this, vector3.getCPtr(vv), vv);
return openbabelJNI.vector3_distSq(swigCPtr, this, vector3.getCPtr(vv), vv);
}
public boolean createOrthoVector(vector3 v) {
return net.sourceforge.openbabelJNI.vector3_createOrthoVector(swigCPtr, this, vector3.getCPtr(v), v);
return openbabelJNI.vector3_createOrthoVector(swigCPtr, this, vector3.getCPtr(v), v);
}
}