mirror of
https://github.com/openbabel/openbabel.git
synced 2025-02-25 18:55:23 -06:00
245 lines
8.2 KiB
Java
245 lines
8.2 KiB
Java
/* ----------------------------------------------------------------------------
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* This file was automatically generated by SWIG (http://www.swig.org).
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* Version 1.3.31
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*
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* Do not make changes to this file unless you know what you are doing--modify
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* the SWIG interface file instead.
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* ----------------------------------------------------------------------------- */
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public class OBResidueIter {
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private long swigCPtr;
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protected boolean swigCMemOwn;
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protected OBResidueIter(long cPtr, boolean cMemoryOwn) {
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swigCMemOwn = cMemoryOwn;
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swigCPtr = cPtr;
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}
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protected static long getCPtr(OBResidueIter obj) {
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return (obj == null) ? 0 : obj.swigCPtr;
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}
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protected void finalize() {
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delete();
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}
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public synchronized void delete() {
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if(swigCPtr != 0 && swigCMemOwn) {
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swigCMemOwn = false;
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openbabelJNI.delete_OBResidueIter(swigCPtr);
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}
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swigCPtr = 0;
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}
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public OBResidueIter() {
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this(openbabelJNI.new_OBResidueIter__SWIG_0(), true);
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}
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public OBResidueIter(OBMol mol) {
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this(openbabelJNI.new_OBResidueIter__SWIG_1(OBMol.getCPtr(mol), mol), true);
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}
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public OBResidueIter(OBResidueIter ri) {
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this(openbabelJNI.new_OBResidueIter__SWIG_2(OBResidueIter.getCPtr(ri), ri), true);
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}
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public OBResidue __deref__() {
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long cPtr = openbabelJNI.OBResidueIter___deref__(swigCPtr, this);
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return (cPtr == 0) ? null : new OBResidue(cPtr, false);
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}
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public OBResidue __ref__() {
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return new OBResidue(openbabelJNI.OBResidueIter___ref__(swigCPtr, this), false);
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}
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public void AddAtom(OBAtom atom) {
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openbabelJNI.OBResidueIter_AddAtom(swigCPtr, this, OBAtom.getCPtr(atom), atom);
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}
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public void InsertAtom(OBAtom atom) {
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openbabelJNI.OBResidueIter_InsertAtom(swigCPtr, this, OBAtom.getCPtr(atom), atom);
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}
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public void RemoveAtom(OBAtom atom) {
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openbabelJNI.OBResidueIter_RemoveAtom(swigCPtr, this, OBAtom.getCPtr(atom), atom);
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}
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public boolean Clear() {
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return openbabelJNI.OBResidueIter_Clear(swigCPtr, this);
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}
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public void SetName(String resname) {
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openbabelJNI.OBResidueIter_SetName(swigCPtr, this, resname);
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}
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public void SetNum(long resnum) {
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openbabelJNI.OBResidueIter_SetNum(swigCPtr, this, resnum);
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}
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public void SetChain(char chain) {
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openbabelJNI.OBResidueIter_SetChain(swigCPtr, this, chain);
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}
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public void SetChainNum(long chainnum) {
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openbabelJNI.OBResidueIter_SetChainNum(swigCPtr, this, chainnum);
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}
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public void SetIdx(long idx) {
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openbabelJNI.OBResidueIter_SetIdx(swigCPtr, this, idx);
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}
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public void SetAtomID(OBAtom atom, String id) {
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openbabelJNI.OBResidueIter_SetAtomID(swigCPtr, this, OBAtom.getCPtr(atom), atom, id);
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}
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public void SetHetAtom(OBAtom atom, boolean hetatm) {
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openbabelJNI.OBResidueIter_SetHetAtom(swigCPtr, this, OBAtom.getCPtr(atom), atom, hetatm);
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}
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public void SetSerialNum(OBAtom atom, long sernum) {
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openbabelJNI.OBResidueIter_SetSerialNum(swigCPtr, this, OBAtom.getCPtr(atom), atom, sernum);
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}
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public String GetName() {
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return openbabelJNI.OBResidueIter_GetName(swigCPtr, this);
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}
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public long GetNum() {
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return openbabelJNI.OBResidueIter_GetNum(swigCPtr, this);
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}
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public long GetNumAtoms() {
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return openbabelJNI.OBResidueIter_GetNumAtoms(swigCPtr, this);
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}
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public char GetChain() {
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return openbabelJNI.OBResidueIter_GetChain(swigCPtr, this);
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}
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public long GetChainNum() {
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return openbabelJNI.OBResidueIter_GetChainNum(swigCPtr, this);
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}
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public long GetIdx() {
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return openbabelJNI.OBResidueIter_GetIdx(swigCPtr, this);
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}
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public long GetResKey() {
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return openbabelJNI.OBResidueIter_GetResKey(swigCPtr, this);
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}
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public SWIGTYPE_p_std__vectorTOpenBabel__OBAtom_p_t GetAtoms() {
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return new SWIGTYPE_p_std__vectorTOpenBabel__OBAtom_p_t(openbabelJNI.OBResidueIter_GetAtoms(swigCPtr, this), true);
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}
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public SWIGTYPE_p_std__vectorTOpenBabel__OBBond_p_t GetBonds(boolean exterior) {
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return new SWIGTYPE_p_std__vectorTOpenBabel__OBBond_p_t(openbabelJNI.OBResidueIter_GetBonds__SWIG_0(swigCPtr, this, exterior), true);
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}
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public SWIGTYPE_p_std__vectorTOpenBabel__OBBond_p_t GetBonds() {
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return new SWIGTYPE_p_std__vectorTOpenBabel__OBBond_p_t(openbabelJNI.OBResidueIter_GetBonds__SWIG_1(swigCPtr, this), true);
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}
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public String GetAtomID(OBAtom atom) {
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return openbabelJNI.OBResidueIter_GetAtomID(swigCPtr, this, OBAtom.getCPtr(atom), atom);
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}
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public long GetSerialNum(OBAtom atom) {
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return openbabelJNI.OBResidueIter_GetSerialNum(swigCPtr, this, OBAtom.getCPtr(atom), atom);
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}
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public boolean GetAminoAcidProperty(int arg0) {
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return openbabelJNI.OBResidueIter_GetAminoAcidProperty(swigCPtr, this, arg0);
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}
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public boolean GetAtomProperty(OBAtom a, int arg1) {
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return openbabelJNI.OBResidueIter_GetAtomProperty(swigCPtr, this, OBAtom.getCPtr(a), a, arg1);
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}
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public boolean GetResidueProperty(int arg0) {
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return openbabelJNI.OBResidueIter_GetResidueProperty(swigCPtr, this, arg0);
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}
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public boolean IsHetAtom(OBAtom atom) {
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return openbabelJNI.OBResidueIter_IsHetAtom(swigCPtr, this, OBAtom.getCPtr(atom), atom);
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}
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public boolean IsResidueType(int arg0) {
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return openbabelJNI.OBResidueIter_IsResidueType(swigCPtr, this, arg0);
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}
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public SWIGTYPE_p_std__vectorTOpenBabel__OBAtom_p_t__iterator BeginAtoms() {
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return new SWIGTYPE_p_std__vectorTOpenBabel__OBAtom_p_t__iterator(openbabelJNI.OBResidueIter_BeginAtoms(swigCPtr, this), true);
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}
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public SWIGTYPE_p_std__vectorTOpenBabel__OBAtom_p_t__iterator EndAtoms() {
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return new SWIGTYPE_p_std__vectorTOpenBabel__OBAtom_p_t__iterator(openbabelJNI.OBResidueIter_EndAtoms(swigCPtr, this), true);
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}
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public OBAtom BeginAtom(SWIGTYPE_p_std__vectorTOpenBabel__OBAtom_p_t__iterator i) {
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long cPtr = openbabelJNI.OBResidueIter_BeginAtom(swigCPtr, this, SWIGTYPE_p_std__vectorTOpenBabel__OBAtom_p_t__iterator.getCPtr(i));
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return (cPtr == 0) ? null : new OBAtom(cPtr, false);
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}
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public OBAtom NextAtom(SWIGTYPE_p_std__vectorTOpenBabel__OBAtom_p_t__iterator i) {
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long cPtr = openbabelJNI.OBResidueIter_NextAtom(swigCPtr, this, SWIGTYPE_p_std__vectorTOpenBabel__OBAtom_p_t__iterator.getCPtr(i));
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return (cPtr == 0) ? null : new OBAtom(cPtr, false);
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}
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public OBBase DoTransformations(SWIGTYPE_p_std__mapTstd__string_std__string_t arg0) {
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long cPtr = openbabelJNI.OBResidueIter_DoTransformations(swigCPtr, this, SWIGTYPE_p_std__mapTstd__string_std__string_t.getCPtr(arg0));
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return (cPtr == 0) ? null : new OBBase(cPtr, false);
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}
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public String ClassDescription() {
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return openbabelJNI.OBResidueIter_ClassDescription(swigCPtr, this);
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}
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public boolean HasData(long type) {
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return openbabelJNI.OBResidueIter_HasData__SWIG_2(swigCPtr, this, type);
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}
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public void DeleteData(long type) {
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openbabelJNI.OBResidueIter_DeleteData__SWIG_0(swigCPtr, this, type);
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}
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public void DeleteData(OBGenericData arg0) {
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openbabelJNI.OBResidueIter_DeleteData__SWIG_1(swigCPtr, this, OBGenericData.getCPtr(arg0), arg0);
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}
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public void DeleteData(vectorData arg0) {
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openbabelJNI.OBResidueIter_DeleteData__SWIG_2(swigCPtr, this, vectorData.getCPtr(arg0), arg0);
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}
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public void SetData(OBGenericData d) {
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openbabelJNI.OBResidueIter_SetData(swigCPtr, this, OBGenericData.getCPtr(d), d);
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}
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public long DataSize() {
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return openbabelJNI.OBResidueIter_DataSize(swigCPtr, this);
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}
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public OBGenericData GetData(long type) {
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long cPtr = openbabelJNI.OBResidueIter_GetData__SWIG_0(swigCPtr, this, type);
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return (cPtr == 0) ? null : new OBGenericData(cPtr, false);
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}
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public vectorData GetData() {
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return new vectorData(openbabelJNI.OBResidueIter_GetData__SWIG_3(swigCPtr, this), false);
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}
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public vectorData GetData(DataOrigin source) {
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return new vectorData(openbabelJNI.OBResidueIter_GetData__SWIG_4(swigCPtr, this, source.swigValue()), true);
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}
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public SWIGTYPE_p_std__vectorTOpenBabel__OBGenericData_p_t__iterator BeginData() {
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return new SWIGTYPE_p_std__vectorTOpenBabel__OBGenericData_p_t__iterator(openbabelJNI.OBResidueIter_BeginData(swigCPtr, this), true);
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}
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public SWIGTYPE_p_std__vectorTOpenBabel__OBGenericData_p_t__iterator EndData() {
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return new SWIGTYPE_p_std__vectorTOpenBabel__OBGenericData_p_t__iterator(openbabelJNI.OBResidueIter_EndData(swigCPtr, this), true);
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}
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}
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