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The quotes turn the value into a title attribute rather than href attribute, thus on http://docs.grafana.org/guides/whats-new-in-v2-1/ this link was rendered as <a href title="https://github.com/...">CHANGELOG.md</a> which when clicked goes back to itself (not to GitHub).
To build the docs locally, you need to have docker installed. The docs are built using a custom docker image and mkdocs.
Build the grafana/docs-base:latest image:
$ git clone https://github.com/grafana/docs-base
$ cd docs-base
$ make docs-build
To build the docs:
$ cd docs
$ make docs
Open localhost:8180 to view the docs.