grafana/pkg/tsdb/prometheus/prometheus.go
Ivana Huckova ba90b57b66
Prometheus: Transform NaN values from matrix response to null on backend (#40757)
* avoid duplicate allocations

* set labels

* Replace NaN in matrix with null

* Refactor and add test

* Update test

* Append response only if no error

Co-authored-by: Ryan McKinley <ryantxu@gmail.com>
2021-10-21 15:01:14 +02:00

611 lines
18 KiB
Go

package prometheus
import (
"context"
"encoding/json"
"errors"
"fmt"
"math"
"regexp"
"sort"
"strconv"
"strings"
"time"
"github.com/grafana/grafana-plugin-sdk-go/backend"
"github.com/grafana/grafana-plugin-sdk-go/backend/datasource"
sdkhttpclient "github.com/grafana/grafana-plugin-sdk-go/backend/httpclient"
"github.com/grafana/grafana-plugin-sdk-go/backend/instancemgmt"
"github.com/grafana/grafana-plugin-sdk-go/data"
"github.com/grafana/grafana/pkg/infra/httpclient"
"github.com/grafana/grafana/pkg/infra/log"
"github.com/grafana/grafana/pkg/plugins/backendplugin"
"github.com/grafana/grafana/pkg/plugins/backendplugin/coreplugin"
"github.com/grafana/grafana/pkg/tsdb/intervalv2"
"github.com/opentracing/opentracing-go"
"github.com/prometheus/client_golang/api"
apiv1 "github.com/prometheus/client_golang/api/prometheus/v1"
"github.com/prometheus/common/model"
)
// Internal interval and range variables
const (
varInterval = "$__interval"
varIntervalMs = "$__interval_ms"
varRange = "$__range"
varRangeS = "$__range_s"
varRangeMs = "$__range_ms"
varRateInterval = "$__rate_interval"
)
var (
plog = log.New("tsdb.prometheus")
legendFormat = regexp.MustCompile(`\{\{\s*(.+?)\s*\}\}`)
safeRes = 11000
)
type Service struct {
intervalCalculator intervalv2.Calculator
im instancemgmt.InstanceManager
}
func ProvideService(httpClientProvider httpclient.Provider, backendPluginManager backendplugin.Manager) (*Service, error) {
plog.Debug("initializing")
im := datasource.NewInstanceManager(newInstanceSettings(httpClientProvider))
s := &Service{
intervalCalculator: intervalv2.NewCalculator(),
im: im,
}
factory := coreplugin.New(backend.ServeOpts{
QueryDataHandler: s,
})
if err := backendPluginManager.Register("prometheus", factory); err != nil {
plog.Error("Failed to register plugin", "error", err)
return nil, err
}
return s, nil
}
func newInstanceSettings(httpClientProvider httpclient.Provider) datasource.InstanceFactoryFunc {
return func(settings backend.DataSourceInstanceSettings) (instancemgmt.Instance, error) {
jsonData := map[string]interface{}{}
err := json.Unmarshal(settings.JSONData, &jsonData)
if err != nil {
return nil, fmt.Errorf("error reading settings: %w", err)
}
httpCliOpts, err := settings.HTTPClientOptions()
if err != nil {
return nil, fmt.Errorf("error getting http options: %w", err)
}
// Set SigV4 service namespace
if httpCliOpts.SigV4 != nil {
httpCliOpts.SigV4.Service = "aps"
}
// timeInterval can be a string or can be missing.
// if it is missing, we set it to empty-string
timeInterval := ""
timeIntervalJson := jsonData["timeInterval"]
if timeIntervalJson != nil {
// if it is not nil, it must be a string
var ok bool
timeInterval, ok = timeIntervalJson.(string)
if !ok {
return nil, errors.New("invalid time-interval provided")
}
}
client, err := createClient(settings.URL, httpCliOpts, httpClientProvider)
if err != nil {
return nil, err
}
mdl := DatasourceInfo{
ID: settings.ID,
URL: settings.URL,
TimeInterval: timeInterval,
promClient: client,
}
return mdl, nil
}
}
//nolint: staticcheck // plugins.DataResponse deprecated
func (s *Service) QueryData(ctx context.Context, req *backend.QueryDataRequest) (*backend.QueryDataResponse, error) {
if len(req.Queries) == 0 {
return &backend.QueryDataResponse{}, fmt.Errorf("query contains no queries")
}
dsInfo, err := s.getDSInfo(req.PluginContext)
if err != nil {
return nil, err
}
client := dsInfo.promClient
result := backend.QueryDataResponse{
Responses: backend.Responses{},
}
queries, err := s.parseQuery(req, dsInfo)
if err != nil {
return &result, err
}
for _, query := range queries {
plog.Debug("Sending query", "start", query.Start, "end", query.End, "step", query.Step, "query", query.Expr)
span, ctx := opentracing.StartSpanFromContext(ctx, "datasource.prometheus")
span.SetTag("expr", query.Expr)
span.SetTag("start_unixnano", query.Start.UnixNano())
span.SetTag("stop_unixnano", query.End.UnixNano())
defer span.Finish()
response := make(map[PrometheusQueryType]interface{})
timeRange := apiv1.Range{
Step: query.Step,
// Align query range to step. It rounds start and end down to a multiple of step.
Start: time.Unix(int64(math.Floor((float64(query.Start.Unix()+query.UtcOffsetSec)/query.Step.Seconds()))*query.Step.Seconds()-float64(query.UtcOffsetSec)), 0),
End: time.Unix(int64(math.Floor((float64(query.End.Unix()+query.UtcOffsetSec)/query.Step.Seconds()))*query.Step.Seconds()-float64(query.UtcOffsetSec)), 0),
}
if query.RangeQuery {
rangeResponse, _, err := client.QueryRange(ctx, query.Expr, timeRange)
if err != nil {
plog.Error("Range query", query.Expr, "failed with", err)
result.Responses[query.RefId] = backend.DataResponse{Error: err}
continue
}
response[RangeQueryType] = rangeResponse
}
if query.InstantQuery {
instantResponse, _, err := client.Query(ctx, query.Expr, query.End)
if err != nil {
plog.Error("Instant query", query.Expr, "failed with", err)
result.Responses[query.RefId] = backend.DataResponse{Error: err}
continue
}
response[InstantQueryType] = instantResponse
}
if query.ExemplarQuery {
exemplarResponse, err := client.QueryExemplars(ctx, query.Expr, timeRange.Start, timeRange.End)
if err != nil {
plog.Error("Exemplar query", query.Expr, "failed with", err)
result.Responses[query.RefId] = backend.DataResponse{Error: err}
} else {
response[ExemplarQueryType] = exemplarResponse
}
}
frames, err := parseResponse(response, query)
if err != nil {
return &result, err
}
result.Responses[query.RefId] = backend.DataResponse{
Frames: frames,
}
}
return &result, nil
}
func createClient(url string, httpOpts sdkhttpclient.Options, clientProvider httpclient.Provider) (apiv1.API, error) {
customMiddlewares := customQueryParametersMiddleware(plog)
httpOpts.Middlewares = []sdkhttpclient.Middleware{customMiddlewares}
roundTripper, err := clientProvider.GetTransport(httpOpts)
if err != nil {
return nil, err
}
cfg := api.Config{
Address: url,
RoundTripper: roundTripper,
}
client, err := api.NewClient(cfg)
if err != nil {
return nil, err
}
return apiv1.NewAPI(client), nil
}
func (s *Service) getDSInfo(pluginCtx backend.PluginContext) (*DatasourceInfo, error) {
i, err := s.im.Get(pluginCtx)
if err != nil {
return nil, err
}
instance := i.(DatasourceInfo)
return &instance, nil
}
func formatLegend(metric model.Metric, query *PrometheusQuery) string {
var legend string
if query.LegendFormat == "" {
legend = metric.String()
} else {
result := legendFormat.ReplaceAllFunc([]byte(query.LegendFormat), func(in []byte) []byte {
labelName := strings.Replace(string(in), "{{", "", 1)
labelName = strings.Replace(labelName, "}}", "", 1)
labelName = strings.TrimSpace(labelName)
if val, exists := metric[model.LabelName(labelName)]; exists {
return []byte(val)
}
return []byte{}
})
legend = string(result)
}
// If legend is empty brackets, use query expression
if legend == "{}" {
legend = query.Expr
}
return legend
}
func (s *Service) parseQuery(queryContext *backend.QueryDataRequest, dsInfo *DatasourceInfo) ([]*PrometheusQuery, error) {
qs := []*PrometheusQuery{}
for _, query := range queryContext.Queries {
model := &QueryModel{}
err := json.Unmarshal(query.JSON, model)
if err != nil {
return nil, err
}
//Final interval value
var interval time.Duration
//Calculate interval
queryInterval := model.Interval
//If we are using variable or interval/step, we will replace it with calculated interval
if queryInterval == varInterval || queryInterval == varIntervalMs || queryInterval == varRateInterval {
queryInterval = ""
}
minInterval, err := intervalv2.GetIntervalFrom(dsInfo.TimeInterval, queryInterval, model.IntervalMS, 15*time.Second)
if err != nil {
return nil, err
}
calculatedInterval := s.intervalCalculator.Calculate(query.TimeRange, minInterval, query.MaxDataPoints)
safeInterval := s.intervalCalculator.CalculateSafeInterval(query.TimeRange, int64(safeRes))
adjustedInterval := safeInterval.Value
if calculatedInterval.Value > safeInterval.Value {
adjustedInterval = calculatedInterval.Value
}
if queryInterval == varRateInterval {
// Rate interval is final and is not affected by resolution
interval = calculateRateInterval(adjustedInterval, dsInfo.TimeInterval, s.intervalCalculator)
} else {
intervalFactor := model.IntervalFactor
if intervalFactor == 0 {
intervalFactor = 1
}
interval = time.Duration(int64(adjustedInterval) * intervalFactor)
}
intervalMs := int64(interval / time.Millisecond)
rangeS := query.TimeRange.To.Unix() - query.TimeRange.From.Unix()
// Interpolate variables in expr
expr := model.Expr
expr = strings.ReplaceAll(expr, varIntervalMs, strconv.FormatInt(intervalMs, 10))
expr = strings.ReplaceAll(expr, varInterval, intervalv2.FormatDuration(interval))
expr = strings.ReplaceAll(expr, varRangeMs, strconv.FormatInt(rangeS*1000, 10))
expr = strings.ReplaceAll(expr, varRangeS, strconv.FormatInt(rangeS, 10))
expr = strings.ReplaceAll(expr, varRange, strconv.FormatInt(rangeS, 10)+"s")
expr = strings.ReplaceAll(expr, varRateInterval, intervalv2.FormatDuration(calculateRateInterval(interval, dsInfo.TimeInterval, s.intervalCalculator)))
rangeQuery := model.RangeQuery
if !model.InstantQuery && !model.RangeQuery {
// In older dashboards, we were not setting range query param and !range && !instant was run as range query
rangeQuery = true
}
qs = append(qs, &PrometheusQuery{
Expr: expr,
Step: interval,
LegendFormat: model.LegendFormat,
Start: query.TimeRange.From,
End: query.TimeRange.To,
RefId: query.RefID,
InstantQuery: model.InstantQuery,
RangeQuery: rangeQuery,
ExemplarQuery: model.ExemplarQuery,
UtcOffsetSec: model.UtcOffsetSec,
})
}
return qs, nil
}
func parseResponse(value map[PrometheusQueryType]interface{}, query *PrometheusQuery) (data.Frames, error) {
frames := data.Frames{}
for _, value := range value {
matrix, ok := value.(model.Matrix)
if ok {
matrixFrames := matrixToDataFrames(matrix, query)
frames = append(frames, matrixFrames...)
continue
}
vector, ok := value.(model.Vector)
if ok {
vectorFrames := vectorToDataFrames(vector, query)
frames = append(frames, vectorFrames...)
continue
}
scalar, ok := value.(*model.Scalar)
if ok {
scalarFrames := scalarToDataFrames(scalar, query)
frames = append(frames, scalarFrames...)
continue
}
exemplar, ok := value.([]apiv1.ExemplarQueryResult)
if ok {
exemplarFrames := exemplarToDataFrames(exemplar, query)
frames = append(frames, exemplarFrames...)
continue
}
}
return frames, nil
}
// IsAPIError returns whether err is or wraps a Prometheus error.
func IsAPIError(err error) bool {
// Check if the right error type is in err's chain.
var e *apiv1.Error
return errors.As(err, &e)
}
func ConvertAPIError(err error) error {
var e *apiv1.Error
if errors.As(err, &e) {
return fmt.Errorf("%s: %s", e.Msg, e.Detail)
}
return err
}
func calculateRateInterval(interval time.Duration, scrapeInterval string, intervalCalculator intervalv2.Calculator) time.Duration {
scrape := scrapeInterval
if scrape == "" {
scrape = "15s"
}
scrapeIntervalDuration, err := intervalv2.ParseIntervalStringToTimeDuration(scrape)
if err != nil {
return time.Duration(0)
}
rateInterval := time.Duration(int(math.Max(float64(interval+scrapeIntervalDuration), float64(4)*float64(scrapeIntervalDuration))))
return rateInterval
}
func matrixToDataFrames(matrix model.Matrix, query *PrometheusQuery) data.Frames {
frames := data.Frames{}
for _, v := range matrix {
tags := make(map[string]string, len(v.Metric))
for k, v := range v.Metric {
tags[string(k)] = string(v)
}
timeField := data.NewFieldFromFieldType(data.FieldTypeTime, len(v.Values))
valueField := data.NewFieldFromFieldType(data.FieldTypeNullableFloat64, len(v.Values))
for i, k := range v.Values {
timeField.Set(i, time.Unix(k.Timestamp.Unix(), 0).UTC())
value := float64(k.Value)
if !math.IsNaN(value) {
valueField.Set(i, &value)
}
}
name := formatLegend(v.Metric, query)
timeField.Name = data.TimeSeriesTimeFieldName
valueField.Name = data.TimeSeriesValueFieldName
valueField.Config = &data.FieldConfig{DisplayNameFromDS: name}
valueField.Labels = tags
frame := data.NewFrame(name, timeField, valueField)
frame.Meta = &data.FrameMeta{
Custom: map[string]string{
"resultType": "matrix",
},
}
frames = append(frames, frame)
}
return frames
}
func scalarToDataFrames(scalar *model.Scalar, query *PrometheusQuery) data.Frames {
timeVector := []time.Time{time.Unix(scalar.Timestamp.Unix(), 0).UTC()}
values := []float64{float64(scalar.Value)}
name := fmt.Sprintf("%g", values[0])
frame := data.NewFrame(name,
data.NewField("Time", nil, timeVector),
data.NewField("Value", nil, values).SetConfig(&data.FieldConfig{DisplayNameFromDS: name}))
frame.Meta = &data.FrameMeta{
Custom: map[string]string{
"resultType": "scalar",
},
}
frames := data.Frames{frame}
return frames
}
func vectorToDataFrames(vector model.Vector, query *PrometheusQuery) data.Frames {
frames := data.Frames{}
for _, v := range vector {
name := formatLegend(v.Metric, query)
tags := make(map[string]string, len(v.Metric))
timeVector := []time.Time{time.Unix(v.Timestamp.Unix(), 0).UTC()}
values := []float64{float64(v.Value)}
for k, v := range v.Metric {
tags[string(k)] = string(v)
}
frame := data.NewFrame(name,
data.NewField("Time", nil, timeVector),
data.NewField("Value", tags, values).SetConfig(&data.FieldConfig{DisplayNameFromDS: name}))
frame.Meta = &data.FrameMeta{
Custom: map[string]string{
"resultType": "vector",
},
}
frames = append(frames, frame)
}
return frames
}
func exemplarToDataFrames(response []apiv1.ExemplarQueryResult, query *PrometheusQuery) data.Frames {
frames := data.Frames{}
events := make([]ExemplarEvent, 0)
for _, exemplarData := range response {
for _, exemplar := range exemplarData.Exemplars {
event := ExemplarEvent{}
exemplarTime := time.Unix(exemplar.Timestamp.Unix(), 0).UTC()
event.Time = exemplarTime
event.Value = float64(exemplar.Value)
event.Labels = make(map[string]string)
for label, value := range exemplar.Labels {
event.Labels[string(label)] = string(value)
}
for seriesLabel, seriesValue := range exemplarData.SeriesLabels {
event.Labels[string(seriesLabel)] = string(seriesValue)
}
events = append(events, event)
}
}
//Sampling of exemplars
bucketedExemplars := make(map[string][]ExemplarEvent)
values := make([]float64, 0)
//Create bucketed exemplars based on aligned timestamp
for _, event := range events {
alignedTs := fmt.Sprintf("%.0f", math.Floor(float64(event.Time.Unix())/query.Step.Seconds())*query.Step.Seconds())
_, ok := bucketedExemplars[alignedTs]
if !ok {
bucketedExemplars[alignedTs] = make([]ExemplarEvent, 0)
}
bucketedExemplars[alignedTs] = append(bucketedExemplars[alignedTs], event)
values = append(values, event.Value)
}
//Calculate standard deviation
standardDeviation := deviation(values)
//Create slice with all of the bucketed exemplars
sampledBuckets := make([]string, len(bucketedExemplars))
for bucketTimes := range bucketedExemplars {
sampledBuckets = append(sampledBuckets, bucketTimes)
}
sort.Strings(sampledBuckets)
//Sample exemplars based ona value, so we are not showing too many of them
sampleExemplars := make([]ExemplarEvent, 0)
for _, bucket := range sampledBuckets {
exemplarsInBucket := bucketedExemplars[bucket]
if len(exemplarsInBucket) == 1 {
sampleExemplars = append(sampleExemplars, exemplarsInBucket[0])
} else {
bucketValues := make([]float64, len(exemplarsInBucket))
for _, exemplar := range exemplarsInBucket {
bucketValues = append(bucketValues, exemplar.Value)
}
sort.Slice(bucketValues, func(i, j int) bool {
return bucketValues[i] > bucketValues[j]
})
sampledBucketValues := make([]float64, 0)
for _, value := range bucketValues {
if len(sampledBucketValues) == 0 {
sampledBucketValues = append(sampledBucketValues, value)
} else {
// Then take values only when at least 2 standard deviation distance to previously taken value
prev := sampledBucketValues[len(sampledBucketValues)-1]
if standardDeviation != 0 && prev-value >= float64(2)*standardDeviation {
sampledBucketValues = append(sampledBucketValues, value)
}
}
}
for _, valueBucket := range sampledBucketValues {
for _, exemplar := range exemplarsInBucket {
if exemplar.Value == valueBucket {
sampleExemplars = append(sampleExemplars, exemplar)
}
}
}
}
}
// Create DF from sampled exemplars
timeVector := make([]time.Time, 0, len(sampleExemplars))
valuesVector := make([]float64, 0, len(sampleExemplars))
labelsVector := make(map[string][]string, len(sampleExemplars))
for _, exemplar := range sampleExemplars {
timeVector = append(timeVector, exemplar.Time)
valuesVector = append(valuesVector, exemplar.Value)
for label, value := range exemplar.Labels {
if labelsVector[label] == nil {
labelsVector[label] = make([]string, 0)
}
labelsVector[label] = append(labelsVector[label], value)
}
}
frame := data.NewFrame("exemplar",
data.NewField("Time", nil, timeVector),
data.NewField("Value", nil, valuesVector))
for label, vector := range labelsVector {
frame.Fields = append(frame.Fields, data.NewField(label, nil, vector))
}
frame.Meta = &data.FrameMeta{
Custom: map[string]PrometheusQueryType{
"resultType": "exemplar",
},
}
frames = append(frames, frame)
return frames
}
func deviation(values []float64) float64 {
var sum, mean, sd float64
valuesLen := float64(len(values))
for _, value := range values {
sum += value
}
mean = sum / valuesLen
for j := 0; j < len(values); j++ {
sd += math.Pow(values[j]-mean, 2)
}
return math.Sqrt(sd / (valuesLen - 1))
}