diff --git a/tools/mo/openvino/tools/mo/moc_frontend/pipeline.py b/tools/mo/openvino/tools/mo/moc_frontend/pipeline.py
index 3984f9b4beb..8a4e767c5b9 100644
--- a/tools/mo/openvino/tools/mo/moc_frontend/pipeline.py
+++ b/tools/mo/openvino/tools/mo/moc_frontend/pipeline.py
@@ -78,6 +78,11 @@ def moc_pipeline(argv: argparse.Namespace, moc_front_end: FrontEnd):
     log.debug('Inputs are same: {}, outputs are same: {}'.format(
         inputs_equal, outputs_equal))
 
+    def create_target_input_shapes(new_input_places):
+        new_input_place_names = [x.get_names()[0] for x in new_input_places]
+        shapes = [shape for shape in argv.placeholder_shapes.values()]
+        return dict(zip(new_input_place_names, shapes))
+
     if not inputs_equal and not outputs_equal:
         log.debug('Using extract subgraph')
         new_input_places = [x['node'] for x in user_shapes]
@@ -86,11 +91,11 @@ def moc_pipeline(argv: argparse.Namespace, moc_front_end: FrontEnd):
         input_model.extract_subgraph(new_input_places, new_output_places)
         # invalidation of existing Place objects could have happened in the operation above
         if user_shapes:
-            new_input_places_name = [x.get_names()[0] for x in new_input_places]
+            placeholder_shapes = create_target_input_shapes(new_input_places)
             new_output_places_name = [x.get_names()[0] for x in new_output_places]
 
             user_shapes, outputs, _ = fe_user_data_repack(
-                input_model, new_input_places_name, argv.placeholder_data_types,
+                input_model, placeholder_shapes, argv.placeholder_data_types,
                 new_output_places_name, argv.freeze_placeholder_with_value, moc_front_end.get_name())
     elif not inputs_equal:
         log.debug('Using override_all_inputs')
@@ -99,9 +104,10 @@ def moc_pipeline(argv: argparse.Namespace, moc_front_end: FrontEnd):
         input_model.override_all_inputs(new_input_places)
         # invalidation of existing Place objects could have happened in the operation above
         if user_shapes:
-            new_input_places_name = [x.get_names()[0] for x in new_input_places]
+            placeholder_shapes = create_target_input_shapes(new_input_places)
+
             user_shapes, outputs, _ = fe_user_data_repack(
-                input_model, new_input_places_name, argv.placeholder_data_types,
+                input_model, placeholder_shapes, argv.placeholder_data_types,
                 argv.output, argv.freeze_placeholder_with_value, moc_front_end.get_name())
     elif not outputs_equal:
         log.debug('Using override_all_outputs')