diff --git a/CHANGES b/CHANGES
index 3364856de..880e868dd 100644
--- a/CHANGES
+++ b/CHANGES
@@ -102,6 +102,22 @@ Features added
 Release 1.0.8 (in development)
 ==============================
 
+* #657: viewcode now works correctly with source files that have
+  non-ASCII encoding.
+
+* #669: Respect the ``noindex`` flag option in py:module directives.
+
+* #675: Fix IndexErrors when including nonexisting lines with
+  :rst:dir:`literalinclude`.
+
+* #676: Respect custom function/method parameter separator strings.
+
+* #682: Fix JS incompatibility with jQuery >= 1.5.
+
+* #693: Fix double encoding done when writing HTMLHelp .hhk files.
+
+* #647: Do not apply SmartyPants in parsed-literal blocks.
+
 
 Release 1.0.7 (Jan 15, 2011)
 ============================
diff --git a/doc/templating.rst b/doc/templating.rst
index 193a90bd9..05a1346c0 100644
--- a/doc/templating.rst
+++ b/doc/templating.rst
@@ -198,7 +198,11 @@ Overriding works like this::
 
    Add additional script files here, like this::
 
-      {% set script_files = script_files + [pathto("_static/myscript.js", 1)] %}
+      {% set script_files = script_files + ["_static/myscript.js"] %}
+
+.. data:: css_files
+
+   Similar to :data:`script_files`, for CSS files.
 
 
 Helper Functions
diff --git a/sphinx/builders/htmlhelp.py b/sphinx/builders/htmlhelp.py
index fcd8a7f3e..143f6df9e 100644
--- a/sphinx/builders/htmlhelp.py
+++ b/sphinx/builders/htmlhelp.py
@@ -259,8 +259,7 @@ class HTMLHelpBuilder(StandaloneHTMLBuilder):
             def write_index(title, refs, subitems):
                 def write_param(name, value):
                     item = '    <param name="%s" value="%s">\n' % (name, value)
-                    f.write(item.encode(self.encoding, 'xmlcharrefreplace')
-                            .decode(self.encoding))
+                    f.write(item)
                 title = cgi.escape(title)
                 f.write('<LI> <OBJECT type="text/sitemap">\n')
                 write_param('Keyword', title)
diff --git a/sphinx/directives/code.py b/sphinx/directives/code.py
index 99fb3502a..8cedab190 100644
--- a/sphinx/directives/code.py
+++ b/sphinx/directives/code.py
@@ -138,7 +138,13 @@ class LiteralInclude(Directive):
                 linelist = parselinenos(linespec, len(lines))
             except ValueError, err:
                 return [document.reporter.warning(str(err), line=self.lineno)]
-            lines = [lines[i] for i in linelist]
+            # just ignore nonexisting lines
+            nlines = len(lines)
+            lines = [lines[i] for i in linelist if i < nlines]
+            if not lines:
+                return [document.reporter.warning(
+                    'Line spec %r: no lines pulled from include file %r' %
+                    (linespec, filename), line=self.lineno)]
 
         startafter = self.options.get('start-after')
         endbefore  = self.options.get('end-before')
diff --git a/sphinx/domains/python.py b/sphinx/domains/python.py
index 021aaaaa7..4004599cb 100644
--- a/sphinx/domains/python.py
+++ b/sphinx/domains/python.py
@@ -418,18 +418,19 @@ class PyModule(Directive):
         modname = self.arguments[0].strip()
         noindex = 'noindex' in self.options
         env.temp_data['py:module'] = modname
-        env.domaindata['py']['modules'][modname] = \
-            (env.docname, self.options.get('synopsis', ''),
-             self.options.get('platform', ''), 'deprecated' in self.options)
-        # make a duplicate entry in 'objects' to facilitate searching for the
-        # module in PythonDomain.find_obj()
-        env.domaindata['py']['objects'][modname] = (env.docname, 'module')
-        targetnode = nodes.target('', '', ids=['module-' + modname], ismod=True)
-        self.state.document.note_explicit_target(targetnode)
-        ret = [targetnode]
-        # the platform and synopsis aren't printed; in fact, they are only used
-        # in the modindex currently
+        ret = []
         if not noindex:
+            env.domaindata['py']['modules'][modname] = \
+                (env.docname, self.options.get('synopsis', ''),
+                 self.options.get('platform', ''), 'deprecated' in self.options)
+            # make a duplicate entry in 'objects' to facilitate searching for the
+            # module in PythonDomain.find_obj()
+            env.domaindata['py']['objects'][modname] = (env.docname, 'module')
+            targetnode = nodes.target('', '', ids=['module-' + modname], ismod=True)
+            self.state.document.note_explicit_target(targetnode)
+            # the platform and synopsis aren't printed; in fact, they are only used
+            # in the modindex currently
+            ret.append(targetnode)
             indextext = _('%s (module)') % modname
             inode = addnodes.index(entries=[('single', indextext,
                                              'module-' + modname, '')])
diff --git a/sphinx/pycode/__init__.py b/sphinx/pycode/__init__.py
index e15e42bf2..bf51e7408 100644
--- a/sphinx/pycode/__init__.py
+++ b/sphinx/pycode/__init__.py
@@ -17,7 +17,7 @@ from cStringIO import StringIO
 from sphinx.errors import PycodeError
 from sphinx.pycode import nodes
 from sphinx.pycode.pgen2 import driver, token, tokenize, parse, literals
-from sphinx.util import get_module_source
+from sphinx.util import get_module_source, detect_encoding
 from sphinx.util.pycompat import next
 from sphinx.util.docstrings import prepare_docstring, prepare_commentdoc
 
@@ -38,10 +38,6 @@ for k, v in token.tok_name.iteritems():
 number2name = pygrammar.number2symbol.copy()
 number2name.update(token.tok_name)
 
-
-# a regex to recognize coding cookies
-_coding_re = re.compile(r'coding[:=]\s*([-\w.]+)')
-
 _eq = nodes.Leaf(token.EQUAL, '=')
 
 
@@ -217,11 +213,10 @@ class ModuleAnalyzer(object):
         self.srcname = srcname
         # file-like object yielding source lines
         self.source = source
-        # will be changed when found by parse()
-        self.encoding = sys.getdefaultencoding()
 
         # cache the source code as well
         pos = self.source.tell()
+        self.encoding = detect_encoding(self.source.readline)
         self.code = self.source.read()
         self.source.seek(pos)
 
@@ -251,13 +246,6 @@ class ModuleAnalyzer(object):
             self.parsetree = pydriver.parse_tokens(self.tokens)
         except parse.ParseError, err:
             raise PycodeError('parsing failed', err)
-        # find the source code encoding, if present
-        comments = self.parsetree.get_prefix()
-        for line in comments.splitlines()[:2]:
-            match = _coding_re.search(line)
-            if match is not None:
-                self.encoding = match.group(1)
-                break
 
     def find_attr_docs(self, scope=''):
         """Find class and module-level attributes and their documentation."""
diff --git a/sphinx/themes/basic/static/searchtools.js_t b/sphinx/themes/basic/static/searchtools.js_t
index 2f1dc6820..0aa291cba 100644
--- a/sphinx/themes/basic/static/searchtools.js_t
+++ b/sphinx/themes/basic/static/searchtools.js_t
@@ -284,7 +284,7 @@ var Search = {
             listItem.slideDown(5, function() {
               displayNextItem();
             });
-          });
+          }, "text");
         } else {
           // no source available, just display title
           Search.output.append(listItem);
diff --git a/sphinx/util/__init__.py b/sphinx/util/__init__.py
index 8218c04a9..b1a3a0d7d 100644
--- a/sphinx/util/__init__.py
+++ b/sphinx/util/__init__.py
@@ -18,7 +18,7 @@ import tempfile
 import posixpath
 import traceback
 from os import path
-from codecs import open
+from codecs import open, BOM_UTF8
 from collections import deque
 
 import docutils
@@ -216,6 +216,59 @@ def get_module_source(modname):
     return 'file', filename
 
 
+# a regex to recognize coding cookies
+_coding_re = re.compile(r'coding[:=]\s*([-\w.]+)')
+
+def detect_encoding(readline):
+    """Like tokenize.detect_encoding() from Py3k, but a bit simplified."""
+
+    def read_or_stop():
+        try:
+            return readline()
+        except StopIteration:
+            return None
+
+    def get_normal_name(orig_enc):
+        """Imitates get_normal_name in tokenizer.c."""
+        # Only care about the first 12 characters.
+        enc = orig_enc[:12].lower().replace('_', '-')
+        if enc == 'utf-8' or enc.startswith('utf-8-'):
+            return 'utf-8'
+        if enc in ('latin-1', 'iso-8859-1', 'iso-latin-1') or \
+           enc.startswith(('latin-1-', 'iso-8859-1-', 'iso-latin-1-')):
+            return 'iso-8859-1'
+        return orig_enc
+
+    def find_cookie(line):
+        try:
+            line_string = line.decode('ascii')
+        except UnicodeDecodeError:
+            return None
+
+        matches = _coding_re.findall(line_string)
+        if not matches:
+            return None
+        return get_normal_name(matches[0])
+
+    default = sys.getdefaultencoding()
+    first = read_or_stop()
+    if first and first.startswith(BOM_UTF8):
+        first = first[3:]
+        default = 'utf-8-sig'
+    if not first:
+        return default
+    encoding = find_cookie(first)
+    if encoding:
+        return encoding
+    second = read_or_stop()
+    if not second:
+        return default
+    encoding = find_cookie(second)
+    if encoding:
+        return encoding
+    return default
+
+
 # Low-level utility functions and classes.
 
 class Tee(object):
diff --git a/sphinx/writers/html.py b/sphinx/writers/html.py
index eb5c76fa9..99d621c6f 100644
--- a/sphinx/writers/html.py
+++ b/sphinx/writers/html.py
@@ -116,12 +116,13 @@ class HTMLTranslator(BaseTranslator):
     def visit_desc_parameterlist(self, node):
         self.body.append('<big>(</big>')
         self.first_param = 1
+        self.param_separator = node.child_text_separator
     def depart_desc_parameterlist(self, node):
         self.body.append('<big>)</big>')
 
     def visit_desc_parameter(self, node):
         if not self.first_param:
-            self.body.append(', ')
+            self.body.append(self.param_separator)
         else:
             self.first_param = 0
         if not node.hasattr('noemph'):
@@ -566,8 +567,15 @@ class SmartyPantsHTMLTranslator(HTMLTranslator):
         self.no_smarty += 1
         try:
             HTMLTranslator.visit_literal_block(self, node)
-        finally:
+        except nodes.SkipNode:
+            # HTMLTranslator raises SkipNode for simple literal blocks,
+            # but not for parsed literal blocks
             self.no_smarty -= 1
+            raise
+
+    def depart_literal_block(self, node):
+        HTMLTranslator.depart_literal_block(self, node)
+        self.no_smarty -= 1
 
     def visit_literal_emphasis(self, node):
         self.no_smarty += 1