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LBPM/common/Domain.cpp

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Fixing some memory leaks/uninitialized values
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// Created by James McClure
// Copyright 2008-2013
#include <stdio.h>
#include <stdlib.h>
#include <iostream>
#include <fstream>
#include <math.h>
#include <time.h>
#include <exception> // std::exception
#include <stdexcept>
#include "common/Domain.h"
#include "common/Array.h"
#include "common/Utilities.h"
#include "common/MPI_Helpers.h"
#include "common/Communication.h"
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// Inline function to read line without a return argument
static inline void fgetl( char * str, int num, FILE * stream )
{
char* ptr = fgets( str, num, stream );
if ( 0 ) {char *temp = (char *)&ptr; temp++;}
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}
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/********************************************************
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* Constructors/Destructor *
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********************************************************/
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Domain::Domain( int nx, int ny, int nz, int rnk, int npx, int npy, int npz,
double lx, double ly, double lz, int BC):
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Nx(0), Ny(0), Nz(0),
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Lx(0), Ly(0), Lz(0), Volume(0), rank(0), BoundaryCondition(0),
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Comm(MPI_COMM_NULL),
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sendCount_x(0), sendCount_y(0), sendCount_z(0), sendCount_X(0), sendCount_Y(0), sendCount_Z(0),
sendCount_xy(0), sendCount_yz(0), sendCount_xz(0), sendCount_Xy(0), sendCount_Yz(0), sendCount_xZ(0),
sendCount_xY(0), sendCount_yZ(0), sendCount_Xz(0), sendCount_XY(0), sendCount_YZ(0), sendCount_XZ(0),
sendList_x(NULL), sendList_y(NULL), sendList_z(NULL), sendList_X(NULL), sendList_Y(NULL), sendList_Z(NULL),
sendList_xy(NULL), sendList_yz(NULL), sendList_xz(NULL), sendList_Xy(NULL), sendList_Yz(NULL), sendList_xZ(NULL),
sendList_xY(NULL), sendList_yZ(NULL), sendList_Xz(NULL), sendList_XY(NULL), sendList_YZ(NULL), sendList_XZ(NULL),
sendBuf_x(NULL), sendBuf_y(NULL), sendBuf_z(NULL), sendBuf_X(NULL), sendBuf_Y(NULL), sendBuf_Z(NULL),
sendBuf_xy(NULL), sendBuf_yz(NULL), sendBuf_xz(NULL), sendBuf_Xy(NULL), sendBuf_Yz(NULL), sendBuf_xZ(NULL),
sendBuf_xY(NULL), sendBuf_yZ(NULL), sendBuf_Xz(NULL), sendBuf_XY(NULL), sendBuf_YZ(NULL), sendBuf_XZ(NULL),
recvCount_x(0), recvCount_y(0), recvCount_z(0), recvCount_X(0), recvCount_Y(0), recvCount_Z(0),
recvCount_xy(0), recvCount_yz(0), recvCount_xz(0), recvCount_Xy(0), recvCount_Yz(0), recvCount_xZ(0),
recvCount_xY(0), recvCount_yZ(0), recvCount_Xz(0), recvCount_XY(0), recvCount_YZ(0), recvCount_XZ(0),
recvList_x(NULL), recvList_y(NULL), recvList_z(NULL), recvList_X(NULL), recvList_Y(NULL), recvList_Z(NULL),
recvList_xy(NULL), recvList_yz(NULL), recvList_xz(NULL), recvList_Xy(NULL), recvList_Yz(NULL), recvList_xZ(NULL),
recvList_xY(NULL), recvList_yZ(NULL), recvList_Xz(NULL), recvList_XY(NULL), recvList_YZ(NULL), recvList_XZ(NULL),
recvBuf_x(NULL), recvBuf_y(NULL), recvBuf_z(NULL), recvBuf_X(NULL), recvBuf_Y(NULL), recvBuf_Z(NULL),
recvBuf_xy(NULL), recvBuf_yz(NULL), recvBuf_xz(NULL), recvBuf_Xy(NULL), recvBuf_Yz(NULL), recvBuf_xZ(NULL),
recvBuf_xY(NULL), recvBuf_yZ(NULL), recvBuf_Xz(NULL), recvBuf_XY(NULL), recvBuf_YZ(NULL), recvBuf_XZ(NULL),
sendData_x(NULL), sendData_y(NULL), sendData_z(NULL), sendData_X(NULL), sendData_Y(NULL), sendData_Z(NULL),
sendData_xy(NULL), sendData_yz(NULL), sendData_xz(NULL), sendData_Xy(NULL), sendData_Yz(NULL), sendData_xZ(NULL),
sendData_xY(NULL), sendData_yZ(NULL), sendData_Xz(NULL), sendData_XY(NULL), sendData_YZ(NULL), sendData_XZ(NULL),
recvData_x(NULL), recvData_y(NULL), recvData_z(NULL), recvData_X(NULL), recvData_Y(NULL), recvData_Z(NULL),
recvData_xy(NULL), recvData_yz(NULL), recvData_xz(NULL), recvData_Xy(NULL), recvData_Yz(NULL), recvData_xZ(NULL),
recvData_xY(NULL), recvData_yZ(NULL), recvData_Xz(NULL), recvData_XY(NULL), recvData_YZ(NULL), recvData_XZ(NULL),
id(NULL)
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{
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auto db = std::make_shared<Database>( );
db->putScalar<int>( "BC", BC );
db->putVector<int>( "nproc", { npx, npx, npx } );
db->putVector<int>( "n", { nx, ny, nz } );
db->putScalar<int>( "nspheres", 0 );
db->putVector<double>( "L", { lx, ly, lz } );
initialize( db );
}
Domain::Domain( std::shared_ptr<Database> db ):
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Nx(0), Ny(0), Nz(0), iproc(0), jproc(0),
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Lx(0), Ly(0), Lz(0), Volume(0), rank(0), BoundaryCondition(0),
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Comm(MPI_COMM_NULL),
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sendCount_x(0), sendCount_y(0), sendCount_z(0), sendCount_X(0), sendCount_Y(0), sendCount_Z(0),
sendCount_xy(0), sendCount_yz(0), sendCount_xz(0), sendCount_Xy(0), sendCount_Yz(0), sendCount_xZ(0),
sendCount_xY(0), sendCount_yZ(0), sendCount_Xz(0), sendCount_XY(0), sendCount_YZ(0), sendCount_XZ(0),
sendList_x(NULL), sendList_y(NULL), sendList_z(NULL), sendList_X(NULL), sendList_Y(NULL), sendList_Z(NULL),
sendList_xy(NULL), sendList_yz(NULL), sendList_xz(NULL), sendList_Xy(NULL), sendList_Yz(NULL), sendList_xZ(NULL),
sendList_xY(NULL), sendList_yZ(NULL), sendList_Xz(NULL), sendList_XY(NULL), sendList_YZ(NULL), sendList_XZ(NULL),
sendBuf_x(NULL), sendBuf_y(NULL), sendBuf_z(NULL), sendBuf_X(NULL), sendBuf_Y(NULL), sendBuf_Z(NULL),
sendBuf_xy(NULL), sendBuf_yz(NULL), sendBuf_xz(NULL), sendBuf_Xy(NULL), sendBuf_Yz(NULL), sendBuf_xZ(NULL),
sendBuf_xY(NULL), sendBuf_yZ(NULL), sendBuf_Xz(NULL), sendBuf_XY(NULL), sendBuf_YZ(NULL), sendBuf_XZ(NULL),
recvCount_x(0), recvCount_y(0), recvCount_z(0), recvCount_X(0), recvCount_Y(0), recvCount_Z(0),
recvCount_xy(0), recvCount_yz(0), recvCount_xz(0), recvCount_Xy(0), recvCount_Yz(0), recvCount_xZ(0),
recvCount_xY(0), recvCount_yZ(0), recvCount_Xz(0), recvCount_XY(0), recvCount_YZ(0), recvCount_XZ(0),
recvList_x(NULL), recvList_y(NULL), recvList_z(NULL), recvList_X(NULL), recvList_Y(NULL), recvList_Z(NULL),
recvList_xy(NULL), recvList_yz(NULL), recvList_xz(NULL), recvList_Xy(NULL), recvList_Yz(NULL), recvList_xZ(NULL),
recvList_xY(NULL), recvList_yZ(NULL), recvList_Xz(NULL), recvList_XY(NULL), recvList_YZ(NULL), recvList_XZ(NULL),
recvBuf_x(NULL), recvBuf_y(NULL), recvBuf_z(NULL), recvBuf_X(NULL), recvBuf_Y(NULL), recvBuf_Z(NULL),
recvBuf_xy(NULL), recvBuf_yz(NULL), recvBuf_xz(NULL), recvBuf_Xy(NULL), recvBuf_Yz(NULL), recvBuf_xZ(NULL),
recvBuf_xY(NULL), recvBuf_yZ(NULL), recvBuf_Xz(NULL), recvBuf_XY(NULL), recvBuf_YZ(NULL), recvBuf_XZ(NULL),
sendData_x(NULL), sendData_y(NULL), sendData_z(NULL), sendData_X(NULL), sendData_Y(NULL), sendData_Z(NULL),
sendData_xy(NULL), sendData_yz(NULL), sendData_xz(NULL), sendData_Xy(NULL), sendData_Yz(NULL), sendData_xZ(NULL),
sendData_xY(NULL), sendData_yZ(NULL), sendData_Xz(NULL), sendData_XY(NULL), sendData_YZ(NULL), sendData_XZ(NULL),
recvData_x(NULL), recvData_y(NULL), recvData_z(NULL), recvData_X(NULL), recvData_Y(NULL), recvData_Z(NULL),
recvData_xy(NULL), recvData_yz(NULL), recvData_xz(NULL), recvData_Xy(NULL), recvData_Yz(NULL), recvData_xZ(NULL),
recvData_xY(NULL), recvData_yZ(NULL), recvData_Xz(NULL), recvData_XY(NULL), recvData_YZ(NULL), recvData_XZ(NULL),
id(NULL)
{
initialize( db );
}
void Domain::initialize( std::shared_ptr<Database> db )
{
d_db = db;
auto nproc = d_db->getVector<int>("nproc");
auto n = d_db->getVector<int>("n");
auto L = d_db->getVector<double>("L");
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//nspheres = d_db->getScalar<int>("nspheres");
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ASSERT( n.size() == 3u );
ASSERT( L.size() == 3u );
ASSERT( nproc.size() == 3u );
int nx = n[0];
int ny = n[1];
int nz = n[2];
Lx = L[0];
Ly = L[1];
Lz = L[2];
Nx = nx+2;
Ny = ny+2;
Nz = nz+2;
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// Initialize ranks
int myrank;
MPI_Comm_rank( MPI_COMM_WORLD, &myrank );
rank_info = RankInfoStruct(myrank,nproc[0],nproc[1],nproc[2]);
// Fill remaining variables
Over-wrote common/ with version from ScaLBL (AA model refactor)
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N = Nx*Ny*Nz;
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Volume = nx*ny*nx*nprocx*nprocy*nprocz*1.0;
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id = new char[N];
memset(id,0,N);
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BoundaryCondition = d_db->getScalar<int>("BC");
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int nprocs;
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MPI_Comm_size( MPI_COMM_WORLD, &nprocs );
INSIST(nprocs == nprocx*nprocy*nprocz,"Fatal error in processor count!");
Fixing some memory leaks/uninitialized values
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}
Domain::~Domain()
{
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// Free sendList
delete [] sendList_x; delete [] sendList_y; delete [] sendList_z;
delete [] sendList_X; delete [] sendList_Y; delete [] sendList_Z;
delete [] sendList_xy; delete [] sendList_yz; delete [] sendList_xz;
delete [] sendList_Xy; delete [] sendList_Yz; delete [] sendList_xZ;
delete [] sendList_xY; delete [] sendList_yZ; delete [] sendList_Xz;
delete [] sendList_XY; delete [] sendList_YZ; delete [] sendList_XZ;
// Free sendBuf
delete [] sendBuf_x; delete [] sendBuf_y; delete [] sendBuf_z;
delete [] sendBuf_X; delete [] sendBuf_Y; delete [] sendBuf_Z;
delete [] sendBuf_xy; delete [] sendBuf_yz; delete [] sendBuf_xz;
delete [] sendBuf_Xy; delete [] sendBuf_Yz; delete [] sendBuf_xZ;
delete [] sendBuf_xY; delete [] sendBuf_yZ; delete [] sendBuf_Xz;
delete [] sendBuf_XY; delete [] sendBuf_YZ; delete [] sendBuf_XZ;
// Free recvList
delete [] recvList_x; delete [] recvList_y; delete [] recvList_z;
delete [] recvList_X; delete [] recvList_Y; delete [] recvList_Z;
delete [] recvList_xy; delete [] recvList_yz; delete [] recvList_xz;
delete [] recvList_Xy; delete [] recvList_Yz; delete [] recvList_xZ;
delete [] recvList_xY; delete [] recvList_yZ; delete [] recvList_Xz;
delete [] recvList_XY; delete [] recvList_YZ; delete [] recvList_XZ;
// Free recvBuf
delete [] recvBuf_x; delete [] recvBuf_y; delete [] recvBuf_z;
delete [] recvBuf_X; delete [] recvBuf_Y; delete [] recvBuf_Z;
delete [] recvBuf_xy; delete [] recvBuf_yz; delete [] recvBuf_xz;
delete [] recvBuf_Xy; delete [] recvBuf_Yz; delete [] recvBuf_xZ;
delete [] recvBuf_xY; delete [] recvBuf_yZ; delete [] recvBuf_Xz;
delete [] recvBuf_XY; delete [] recvBuf_YZ; delete [] recvBuf_XZ;
// Free sendData
delete [] sendData_x; delete [] sendData_y; delete [] sendData_z;
delete [] sendData_X; delete [] sendData_Y; delete [] sendData_Z;
delete [] sendData_xy; delete [] sendData_xY; delete [] sendData_Xy;
delete [] sendData_XY; delete [] sendData_xz; delete [] sendData_xZ;
delete [] sendData_Xz; delete [] sendData_XZ; delete [] sendData_yz;
delete [] sendData_yZ; delete [] sendData_Yz; delete [] sendData_YZ;
// Free recvData
delete [] recvData_x; delete [] recvData_y; delete [] recvData_z;
delete [] recvData_X; delete [] recvData_Y; delete [] recvData_Z;
delete [] recvData_xy; delete [] recvData_xY; delete [] recvData_Xy;
delete [] recvData_XY; delete [] recvData_xz; delete [] recvData_xZ;
delete [] recvData_Xz; delete [] recvData_XZ; delete [] recvData_yz;
delete [] recvData_yZ; delete [] recvData_Yz; delete [] recvData_YZ;
// Free id
delete [] id;
// Free the communicator
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if ( Comm != MPI_COMM_WORLD && Comm != MPI_COMM_NULL ) {
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MPI_Comm_free(&Comm);
}
Fixing some memory leaks/uninitialized values
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}
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/********************************************************
* Initialize communication *
********************************************************/
void Domain::CommInit(MPI_Comm Communicator)
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{
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int i,j,k,n;
int sendtag = 21;
int recvtag = 21;
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MPI_Comm_dup(Communicator,&Comm);
Over-wrote common/ with version from ScaLBL (AA model refactor)
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// set up the neighbor ranks
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rank_info = RankInfoStruct( rank, nprocx, nprocy, nprocz );
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MPI_Barrier(Communicator);
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//......................................................................................
MPI_Request req1[18], req2[18];
MPI_Status stat1[18],stat2[18];
//......................................................................................
sendCount_x = sendCount_y = sendCount_z = sendCount_X = sendCount_Y = sendCount_Z = 0;
sendCount_xy = sendCount_yz = sendCount_xz = sendCount_Xy = sendCount_Yz = sendCount_xZ = 0;
sendCount_xY = sendCount_yZ = sendCount_Xz = sendCount_XY = sendCount_YZ = sendCount_XZ = 0;
//......................................................................................
for (k=1; k<Nz-1; k++){
for (j=1; j<Ny-1; j++){
for (i=1; i<Nx-1; i++){
// Check the phase ID
if (id[k*Nx*Ny+j*Nx+i] != 0){
// Counts for the six faces
if (i==1) sendCount_x++;
if (j==1) sendCount_y++;
if (k==1) sendCount_z++;
if (i==Nx-2) sendCount_X++;
if (j==Ny-2) sendCount_Y++;
if (k==Nz-2) sendCount_Z++;
// Counts for the twelve edges
if (i==1 && j==1) sendCount_xy++;
if (i==1 && j==Ny-2) sendCount_xY++;
if (i==Nx-2 && j==1) sendCount_Xy++;
if (i==Nx-2 && j==Ny-2) sendCount_XY++;
if (i==1 && k==1) sendCount_xz++;
if (i==1 && k==Nz-2) sendCount_xZ++;
if (i==Nx-2 && k==1) sendCount_Xz++;
if (i==Nx-2 && k==Nz-2) sendCount_XZ++;
if (j==1 && k==1) sendCount_yz++;
if (j==1 && k==Nz-2) sendCount_yZ++;
if (j==Ny-2 && k==1) sendCount_Yz++;
if (j==Ny-2 && k==Nz-2) sendCount_YZ++;
}
}
}
}
// allocate send lists
sendList_x = new int [sendCount_x];
sendList_y = new int [sendCount_y];
sendList_z = new int [sendCount_z];
sendList_X = new int [sendCount_X];
sendList_Y = new int [sendCount_Y];
sendList_Z = new int [sendCount_Z];
sendList_xy = new int [sendCount_xy];
sendList_yz = new int [sendCount_yz];
sendList_xz = new int [sendCount_xz];
sendList_Xy = new int [sendCount_Xy];
sendList_Yz = new int [sendCount_Yz];
sendList_xZ = new int [sendCount_xZ];
sendList_xY = new int [sendCount_xY];
sendList_yZ = new int [sendCount_yZ];
sendList_Xz = new int [sendCount_Xz];
sendList_XY = new int [sendCount_XY];
sendList_YZ = new int [sendCount_YZ];
sendList_XZ = new int [sendCount_XZ];
// Populate the send list
sendCount_x = sendCount_y = sendCount_z = sendCount_X = sendCount_Y = sendCount_Z = 0;
sendCount_xy = sendCount_yz = sendCount_xz = sendCount_Xy = sendCount_Yz = sendCount_xZ = 0;
sendCount_xY = sendCount_yZ = sendCount_Xz = sendCount_XY = sendCount_YZ = sendCount_XZ = 0;
for (k=1; k<Nz-1; k++){
for (j=1; j<Ny-1; j++){
for (i=1; i<Nx-1; i++){
// Local value to send
n = k*Nx*Ny+j*Nx+i;
if (id[n] != 0){
// Counts for the six faces
if (i==1) sendList_x[sendCount_x++]=n;
if (j==1) sendList_y[sendCount_y++]=n;
if (k==1) sendList_z[sendCount_z++]=n;
if (i==Nx-2) sendList_X[sendCount_X++]=n;
if (j==Ny-2) sendList_Y[sendCount_Y++]=n;
if (k==Nz-2) sendList_Z[sendCount_Z++]=n;
// Counts for the twelve edges
if (i==1 && j==1) sendList_xy[sendCount_xy++]=n;
if (i==1 && j==Ny-2) sendList_xY[sendCount_xY++]=n;
if (i==Nx-2 && j==1) sendList_Xy[sendCount_Xy++]=n;
if (i==Nx-2 && j==Ny-2) sendList_XY[sendCount_XY++]=n;
if (i==1 && k==1) sendList_xz[sendCount_xz++]=n;
if (i==1 && k==Nz-2) sendList_xZ[sendCount_xZ++]=n;
if (i==Nx-2 && k==1) sendList_Xz[sendCount_Xz++]=n;
if (i==Nx-2 && k==Nz-2) sendList_XZ[sendCount_XZ++]=n;
if (j==1 && k==1) sendList_yz[sendCount_yz++]=n;
if (j==1 && k==Nz-2) sendList_yZ[sendCount_yZ++]=n;
if (j==Ny-2 && k==1) sendList_Yz[sendCount_Yz++]=n;
if (j==Ny-2 && k==Nz-2) sendList_YZ[sendCount_YZ++]=n;
}
}
}
}
// allocate send buffers
sendBuf_x = new int [sendCount_x];
sendBuf_y = new int [sendCount_y];
sendBuf_z = new int [sendCount_z];
sendBuf_X = new int [sendCount_X];
sendBuf_Y = new int [sendCount_Y];
sendBuf_Z = new int [sendCount_Z];
sendBuf_xy = new int [sendCount_xy];
sendBuf_yz = new int [sendCount_yz];
sendBuf_xz = new int [sendCount_xz];
sendBuf_Xy = new int [sendCount_Xy];
sendBuf_Yz = new int [sendCount_Yz];
sendBuf_xZ = new int [sendCount_xZ];
sendBuf_xY = new int [sendCount_xY];
sendBuf_yZ = new int [sendCount_yZ];
sendBuf_Xz = new int [sendCount_Xz];
sendBuf_XY = new int [sendCount_XY];
sendBuf_YZ = new int [sendCount_YZ];
sendBuf_XZ = new int [sendCount_XZ];
//......................................................................................
MPI_Isend(&sendCount_x, 1,MPI_INT,rank_x,sendtag+0,Communicator,&req1[0]);
MPI_Irecv(&recvCount_X, 1,MPI_INT,rank_X,recvtag+0,Communicator,&req2[0]);
MPI_Isend(&sendCount_X, 1,MPI_INT,rank_X,sendtag+1,Communicator,&req1[1]);
MPI_Irecv(&recvCount_x, 1,MPI_INT,rank_x,recvtag+1,Communicator,&req2[1]);
MPI_Isend(&sendCount_y, 1,MPI_INT,rank_y,sendtag+2,Communicator,&req1[2]);
MPI_Irecv(&recvCount_Y, 1,MPI_INT,rank_Y,recvtag+2,Communicator,&req2[2]);
MPI_Isend(&sendCount_Y, 1,MPI_INT,rank_Y,sendtag+3,Communicator,&req1[3]);
MPI_Irecv(&recvCount_y, 1,MPI_INT,rank_y,recvtag+3,Communicator,&req2[3]);
MPI_Isend(&sendCount_z, 1,MPI_INT,rank_z,sendtag+4,Communicator,&req1[4]);
MPI_Irecv(&recvCount_Z, 1,MPI_INT,rank_Z,recvtag+4,Communicator,&req2[4]);
MPI_Isend(&sendCount_Z, 1,MPI_INT,rank_Z,sendtag+5,Communicator,&req1[5]);
MPI_Irecv(&recvCount_z, 1,MPI_INT,rank_z,recvtag+5,Communicator,&req2[5]);
MPI_Isend(&sendCount_xy, 1,MPI_INT,rank_xy,sendtag+6,Communicator,&req1[6]);
MPI_Irecv(&recvCount_XY, 1,MPI_INT,rank_XY,recvtag+6,Communicator,&req2[6]);
MPI_Isend(&sendCount_XY, 1,MPI_INT,rank_XY,sendtag+7,Communicator,&req1[7]);
MPI_Irecv(&recvCount_xy, 1,MPI_INT,rank_xy,recvtag+7,Communicator,&req2[7]);
MPI_Isend(&sendCount_Xy, 1,MPI_INT,rank_Xy,sendtag+8,Communicator,&req1[8]);
MPI_Irecv(&recvCount_xY, 1,MPI_INT,rank_xY,recvtag+8,Communicator,&req2[8]);
MPI_Isend(&sendCount_xY, 1,MPI_INT,rank_xY,sendtag+9,Communicator,&req1[9]);
MPI_Irecv(&recvCount_Xy, 1,MPI_INT,rank_Xy,recvtag+9,Communicator,&req2[9]);
MPI_Isend(&sendCount_xz, 1,MPI_INT,rank_xz,sendtag+10,Communicator,&req1[10]);
MPI_Irecv(&recvCount_XZ, 1,MPI_INT,rank_XZ,recvtag+10,Communicator,&req2[10]);
MPI_Isend(&sendCount_XZ, 1,MPI_INT,rank_XZ,sendtag+11,Communicator,&req1[11]);
MPI_Irecv(&recvCount_xz, 1,MPI_INT,rank_xz,recvtag+11,Communicator,&req2[11]);
MPI_Isend(&sendCount_Xz, 1,MPI_INT,rank_Xz,sendtag+12,Communicator,&req1[12]);
MPI_Irecv(&recvCount_xZ, 1,MPI_INT,rank_xZ,recvtag+12,Communicator,&req2[12]);
MPI_Isend(&sendCount_xZ, 1,MPI_INT,rank_xZ,sendtag+13,Communicator,&req1[13]);
MPI_Irecv(&recvCount_Xz, 1,MPI_INT,rank_Xz,recvtag+13,Communicator,&req2[13]);
MPI_Isend(&sendCount_yz, 1,MPI_INT,rank_yz,sendtag+14,Communicator,&req1[14]);
MPI_Irecv(&recvCount_YZ, 1,MPI_INT,rank_YZ,recvtag+14,Communicator,&req2[14]);
MPI_Isend(&sendCount_YZ, 1,MPI_INT,rank_YZ,sendtag+15,Communicator,&req1[15]);
MPI_Irecv(&recvCount_yz, 1,MPI_INT,rank_yz,recvtag+15,Communicator,&req2[15]);
MPI_Isend(&sendCount_Yz, 1,MPI_INT,rank_Yz,sendtag+16,Communicator,&req1[16]);
MPI_Irecv(&recvCount_yZ, 1,MPI_INT,rank_yZ,recvtag+16,Communicator,&req2[16]);
MPI_Isend(&sendCount_yZ, 1,MPI_INT,rank_yZ,sendtag+17,Communicator,&req1[17]);
MPI_Irecv(&recvCount_Yz, 1,MPI_INT,rank_Yz,recvtag+17,Communicator,&req2[17]);
MPI_Waitall(18,req1,stat1);
MPI_Waitall(18,req2,stat2);
MPI_Barrier(Communicator);
//......................................................................................
// recv buffers
recvList_x = new int [recvCount_x];
recvList_y = new int [recvCount_y];
recvList_z = new int [recvCount_z];
recvList_X = new int [recvCount_X];
recvList_Y = new int [recvCount_Y];
recvList_Z = new int [recvCount_Z];
recvList_xy = new int [recvCount_xy];
recvList_yz = new int [recvCount_yz];
recvList_xz = new int [recvCount_xz];
recvList_Xy = new int [recvCount_Xy];
recvList_Yz = new int [recvCount_Yz];
recvList_xZ = new int [recvCount_xZ];
recvList_xY = new int [recvCount_xY];
recvList_yZ = new int [recvCount_yZ];
recvList_Xz = new int [recvCount_Xz];
recvList_XY = new int [recvCount_XY];
recvList_YZ = new int [recvCount_YZ];
recvList_XZ = new int [recvCount_XZ];
//......................................................................................
MPI_Isend(sendList_x, sendCount_x,MPI_INT,rank_x,sendtag,Communicator,&req1[0]);
MPI_Irecv(recvList_X, recvCount_X,MPI_INT,rank_X,recvtag,Communicator,&req2[0]);
MPI_Isend(sendList_X, sendCount_X,MPI_INT,rank_X,sendtag,Communicator,&req1[1]);
MPI_Irecv(recvList_x, recvCount_x,MPI_INT,rank_x,recvtag,Communicator,&req2[1]);
MPI_Isend(sendList_y, sendCount_y,MPI_INT,rank_y,sendtag,Communicator,&req1[2]);
MPI_Irecv(recvList_Y, recvCount_Y,MPI_INT,rank_Y,recvtag,Communicator,&req2[2]);
MPI_Isend(sendList_Y, sendCount_Y,MPI_INT,rank_Y,sendtag,Communicator,&req1[3]);
MPI_Irecv(recvList_y, recvCount_y,MPI_INT,rank_y,recvtag,Communicator,&req2[3]);
MPI_Isend(sendList_z, sendCount_z,MPI_INT,rank_z,sendtag,Communicator,&req1[4]);
MPI_Irecv(recvList_Z, recvCount_Z,MPI_INT,rank_Z,recvtag,Communicator,&req2[4]);
MPI_Isend(sendList_Z, sendCount_Z,MPI_INT,rank_Z,sendtag,Communicator,&req1[5]);
MPI_Irecv(recvList_z, recvCount_z,MPI_INT,rank_z,recvtag,Communicator,&req2[5]);
MPI_Isend(sendList_xy, sendCount_xy,MPI_INT,rank_xy,sendtag,Communicator,&req1[6]);
MPI_Irecv(recvList_XY, recvCount_XY,MPI_INT,rank_XY,recvtag,Communicator,&req2[6]);
MPI_Isend(sendList_XY, sendCount_XY,MPI_INT,rank_XY,sendtag,Communicator,&req1[7]);
MPI_Irecv(recvList_xy, recvCount_xy,MPI_INT,rank_xy,recvtag,Communicator,&req2[7]);
MPI_Isend(sendList_Xy, sendCount_Xy,MPI_INT,rank_Xy,sendtag,Communicator,&req1[8]);
MPI_Irecv(recvList_xY, recvCount_xY,MPI_INT,rank_xY,recvtag,Communicator,&req2[8]);
MPI_Isend(sendList_xY, sendCount_xY,MPI_INT,rank_xY,sendtag,Communicator,&req1[9]);
MPI_Irecv(recvList_Xy, recvCount_Xy,MPI_INT,rank_Xy,recvtag,Communicator,&req2[9]);
MPI_Isend(sendList_xz, sendCount_xz,MPI_INT,rank_xz,sendtag,Communicator,&req1[10]);
MPI_Irecv(recvList_XZ, recvCount_XZ,MPI_INT,rank_XZ,recvtag,Communicator,&req2[10]);
MPI_Isend(sendList_XZ, sendCount_XZ,MPI_INT,rank_XZ,sendtag,Communicator,&req1[11]);
MPI_Irecv(recvList_xz, recvCount_xz,MPI_INT,rank_xz,recvtag,Communicator,&req2[11]);
MPI_Isend(sendList_Xz, sendCount_Xz,MPI_INT,rank_Xz,sendtag,Communicator,&req1[12]);
MPI_Irecv(recvList_xZ, recvCount_xZ,MPI_INT,rank_xZ,recvtag,Communicator,&req2[12]);
MPI_Isend(sendList_xZ, sendCount_xZ,MPI_INT,rank_xZ,sendtag,Communicator,&req1[13]);
MPI_Irecv(recvList_Xz, recvCount_Xz,MPI_INT,rank_Xz,recvtag,Communicator,&req2[13]);
MPI_Isend(sendList_yz, sendCount_yz,MPI_INT,rank_yz,sendtag,Communicator,&req1[14]);
MPI_Irecv(recvList_YZ, recvCount_YZ,MPI_INT,rank_YZ,recvtag,Communicator,&req2[14]);
MPI_Isend(sendList_YZ, sendCount_YZ,MPI_INT,rank_YZ,sendtag,Communicator,&req1[15]);
MPI_Irecv(recvList_yz, recvCount_yz,MPI_INT,rank_yz,recvtag,Communicator,&req2[15]);
MPI_Isend(sendList_Yz, sendCount_Yz,MPI_INT,rank_Yz,sendtag,Communicator,&req1[16]);
MPI_Irecv(recvList_yZ, recvCount_yZ,MPI_INT,rank_yZ,recvtag,Communicator,&req2[16]);
MPI_Isend(sendList_yZ, sendCount_yZ,MPI_INT,rank_yZ,sendtag,Communicator,&req1[17]);
MPI_Irecv(recvList_Yz, recvCount_Yz,MPI_INT,rank_Yz,recvtag,Communicator,&req2[17]);
MPI_Waitall(18,req1,stat1);
MPI_Waitall(18,req2,stat2);
//......................................................................................
for (int idx=0; idx<recvCount_x; idx++) recvList_x[idx] -= (Nx-2);
for (int idx=0; idx<recvCount_X; idx++) recvList_X[idx] += (Nx-2);
for (int idx=0; idx<recvCount_y; idx++) recvList_y[idx] -= (Ny-2)*Nx;
for (int idx=0; idx<recvCount_Y; idx++) recvList_Y[idx] += (Ny-2)*Nx;
for (int idx=0; idx<recvCount_z; idx++) recvList_z[idx] -= (Nz-2)*Nx*Ny;
for (int idx=0; idx<recvCount_Z; idx++) recvList_Z[idx] += (Nz-2)*Nx*Ny;
for (int idx=0; idx<recvCount_xy; idx++) recvList_xy[idx] -= (Nx-2)+(Ny-2)*Nx;
for (int idx=0; idx<recvCount_XY; idx++) recvList_XY[idx] += (Nx-2)+(Ny-2)*Nx;
for (int idx=0; idx<recvCount_xY; idx++) recvList_xY[idx] -= (Nx-2)-(Ny-2)*Nx;
for (int idx=0; idx<recvCount_Xy; idx++) recvList_Xy[idx] += (Nx-2)-(Ny-2)*Nx;
for (int idx=0; idx<recvCount_xz; idx++) recvList_xz[idx] -= (Nx-2)+(Nz-2)*Nx*Ny;
for (int idx=0; idx<recvCount_XZ; idx++) recvList_XZ[idx] += (Nx-2)+(Nz-2)*Nx*Ny;
for (int idx=0; idx<recvCount_xZ; idx++) recvList_xZ[idx] -= (Nx-2)-(Nz-2)*Nx*Ny;
for (int idx=0; idx<recvCount_Xz; idx++) recvList_Xz[idx] += (Nx-2)-(Nz-2)*Nx*Ny;
for (int idx=0; idx<recvCount_yz; idx++) recvList_yz[idx] -= (Ny-2)*Nx + (Nz-2)*Nx*Ny;
for (int idx=0; idx<recvCount_YZ; idx++) recvList_YZ[idx] += (Ny-2)*Nx + (Nz-2)*Nx*Ny;
for (int idx=0; idx<recvCount_yZ; idx++) recvList_yZ[idx] -= (Ny-2)*Nx - (Nz-2)*Nx*Ny;
for (int idx=0; idx<recvCount_Yz; idx++) recvList_Yz[idx] += (Ny-2)*Nx - (Nz-2)*Nx*Ny;
//......................................................................................
// allocate recv buffers
recvBuf_x = new int [recvCount_x];
recvBuf_y = new int [recvCount_y];
recvBuf_z = new int [recvCount_z];
recvBuf_X = new int [recvCount_X];
recvBuf_Y = new int [recvCount_Y];
recvBuf_Z = new int [recvCount_Z];
recvBuf_xy = new int [recvCount_xy];
recvBuf_yz = new int [recvCount_yz];
recvBuf_xz = new int [recvCount_xz];
recvBuf_Xy = new int [recvCount_Xy];
recvBuf_Yz = new int [recvCount_Yz];
recvBuf_xZ = new int [recvCount_xZ];
recvBuf_xY = new int [recvCount_xY];
recvBuf_yZ = new int [recvCount_yZ];
recvBuf_Xz = new int [recvCount_Xz];
recvBuf_XY = new int [recvCount_XY];
recvBuf_YZ = new int [recvCount_YZ];
recvBuf_XZ = new int [recvCount_XZ];
//......................................................................................
// send buffers
sendData_x = new double [sendCount_x];
sendData_y = new double [sendCount_y];
sendData_z = new double [sendCount_z];
sendData_X = new double [sendCount_X];
sendData_Y = new double [sendCount_Y];
sendData_Z = new double [sendCount_Z];
sendData_xy = new double [sendCount_xy];
sendData_yz = new double [sendCount_yz];
sendData_xz = new double [sendCount_xz];
sendData_Xy = new double [sendCount_Xy];
sendData_Yz = new double [sendCount_Yz];
sendData_xZ = new double [sendCount_xZ];
sendData_xY = new double [sendCount_xY];
sendData_yZ = new double [sendCount_yZ];
sendData_Xz = new double [sendCount_Xz];
sendData_XY = new double [sendCount_XY];
sendData_YZ = new double [sendCount_YZ];
sendData_XZ = new double [sendCount_XZ];
//......................................................................................
// recv buffers
recvData_x = new double [recvCount_x];
recvData_y = new double [recvCount_y];
recvData_z = new double [recvCount_z];
recvData_X = new double [recvCount_X];
recvData_Y = new double [recvCount_Y];
recvData_Z = new double [recvCount_Z];
recvData_xy = new double [recvCount_xy];
recvData_yz = new double [recvCount_yz];
recvData_xz = new double [recvCount_xz];
recvData_Xy = new double [recvCount_Xy];
recvData_xZ = new double [recvCount_xZ];
recvData_xY = new double [recvCount_xY];
recvData_yZ = new double [recvCount_yZ];
recvData_Yz = new double [recvCount_Yz];
recvData_Xz = new double [recvCount_Xz];
recvData_XY = new double [recvCount_XY];
recvData_YZ = new double [recvCount_YZ];
recvData_XZ = new double [recvCount_XZ];
//......................................................................................
Fixing some memory leaks/uninitialized values
2015-08-31 11:30:37 -04:00
}
Over-wrote common/ with version from ScaLBL (AA model refactor)
2018-01-24 10:05:48 -05:00
Cleaning up Domain
2018-05-15 15:14:13 -04:00
/********************************************************
* AssignComponentLabels *
********************************************************/
Over-wrote common/ with version from ScaLBL (AA model refactor)
2018-01-24 10:05:48 -05:00
void Domain::AssignComponentLabels(double *phase)
Fixing some memory leaks/uninitialized values
2015-08-31 11:30:37 -04:00
{
Over-wrote common/ with version from ScaLBL (AA model refactor)
2018-01-24 10:05:48 -05:00
int NLABELS=0;
char VALUE=0;
double AFFINITY=0.f;
vector <char> Label;
vector <double> Affinity;
// Read the labels
Assign components from input file
2018-02-08 22:32:27 -05:00
if (rank==0){
printf("Component labels:\n");
Over-wrote common/ with version from ScaLBL (AA model refactor)
2018-01-24 10:05:48 -05:00
ifstream iFILE("ComponentLabels.csv");
if (iFILE.good()){
Fixed componentLable.csv
2018-02-09 16:03:36 -05:00
int value;
Over-wrote common/ with version from ScaLBL (AA model refactor)
2018-01-24 10:05:48 -05:00
while (!iFILE.eof()){
Fixed componentLable.csv
2018-02-09 16:03:36 -05:00
iFILE>>value;
Over-wrote common/ with version from ScaLBL (AA model refactor)
2018-01-24 10:05:48 -05:00
iFILE>>AFFINITY;
Fixed componentLable.csv
2018-02-09 16:03:36 -05:00
VALUE=char(value);
Label.push_back(value);
Over-wrote common/ with version from ScaLBL (AA model refactor)
2018-01-24 10:05:48 -05:00
Affinity.push_back(AFFINITY);
NLABELS++;
printf("%i %f\n",VALUE,AFFINITY);
}
}
else{
Assign components from input file
2018-02-08 22:32:27 -05:00
printf("Using default labels: Solid (0 --> -1.0), NWP (1 --> 1.0), WP (2 --> -1.0)\n");
// Set default values
VALUE=0; AFFINITY=-1.0;
Label.push_back(VALUE);
Affinity.push_back(AFFINITY);
NLABELS++;
VALUE=1; AFFINITY=1.0;
Label.push_back(VALUE);
Affinity.push_back(AFFINITY);
NLABELS++;
VALUE=2; AFFINITY=-1.0;
Label.push_back(VALUE);
Affinity.push_back(AFFINITY);
NLABELS++;
}
Over-wrote common/ with version from ScaLBL (AA model refactor)
2018-01-24 10:05:48 -05:00
}
Assign components from input file
2018-02-08 22:32:27 -05:00
MPI_Barrier(Comm);
Over-wrote common/ with version from ScaLBL (AA model refactor)
2018-01-24 10:05:48 -05:00
Assign components from input file
2018-02-08 22:32:27 -05:00
// Broadcast the list
MPI_Bcast(&NLABELS,1,MPI_INT,0,Comm);
//printf("rank=%i, NLABELS=%i \n ",rank,NLABELS);
Over-wrote common/ with version from ScaLBL (AA model refactor)
2018-01-24 10:05:48 -05:00
// Copy into contiguous buffers
Assign components from input file
2018-02-08 22:32:27 -05:00
char *LabelList;
double * AffinityList;
LabelList=new char[NLABELS];
AffinityList=new double[NLABELS];
Over-wrote common/ with version from ScaLBL (AA model refactor)
2018-01-24 10:05:48 -05:00
Assign components from input file
2018-02-08 22:32:27 -05:00
if (rank==0){
for (int idx=0; idx < NLABELS; idx++){
VALUE=Label[idx];
AFFINITY=Affinity[idx];
printf("rank=%i, idx=%i, value=%d, affinity=%f \n",rank,idx,VALUE,AFFINITY);
LabelList[idx]=VALUE;
AffinityList[idx]=AFFINITY;
}
}
MPI_Barrier(Comm);
MPI_Bcast(LabelList,NLABELS,MPI_CHAR,0,Comm);
MPI_Bcast(AffinityList,NLABELS,MPI_DOUBLE,0,Comm);
Over-wrote common/ with version from ScaLBL (AA model refactor)
2018-01-24 10:05:48 -05:00
// Assign the labels
for (int k=0;k<Nz;k++){
for (int j=0;j<Ny;j++){
for (int i=0;i<Nx;i++){
int n = k*Nx*Ny+j*Nx+i;
VALUE=id[n];
// Assign the affinity from the paired list
for (int idx=0; idx < NLABELS; idx++){
Assign components from input file
2018-02-08 22:32:27 -05:00
//printf("rank=%i, idx=%i, value=%i, %i, \n",rank,idx, VALUE,LabelList[idx]);
if (VALUE == LabelList[idx]){
AFFINITY=AffinityList[idx];
Over-wrote common/ with version from ScaLBL (AA model refactor)
2018-01-24 10:05:48 -05:00
idx = NLABELS;
}
}
phase[n] = AFFINITY;
}
}
}
Fixing some memory leaks/uninitialized values
2015-08-31 11:30:37 -04:00
}
Over-wrote common/ with version from ScaLBL (AA model refactor)
2018-01-24 10:05:48 -05:00
void Domain::CommunicateMeshHalo(DoubleArray &Mesh)
{
int sendtag, recvtag;
sendtag = recvtag = 7;
double *MeshData = Mesh.data();
PackMeshData(sendList_x, sendCount_x ,sendData_x, MeshData);
PackMeshData(sendList_X, sendCount_X ,sendData_X, MeshData);
PackMeshData(sendList_y, sendCount_y ,sendData_y, MeshData);
PackMeshData(sendList_Y, sendCount_Y ,sendData_Y, MeshData);
PackMeshData(sendList_z, sendCount_z ,sendData_z, MeshData);
PackMeshData(sendList_Z, sendCount_Z ,sendData_Z, MeshData);
PackMeshData(sendList_xy, sendCount_xy ,sendData_xy, MeshData);
PackMeshData(sendList_Xy, sendCount_Xy ,sendData_Xy, MeshData);
PackMeshData(sendList_xY, sendCount_xY ,sendData_xY, MeshData);
PackMeshData(sendList_XY, sendCount_XY ,sendData_XY, MeshData);
PackMeshData(sendList_xz, sendCount_xz ,sendData_xz, MeshData);
PackMeshData(sendList_Xz, sendCount_Xz ,sendData_Xz, MeshData);
PackMeshData(sendList_xZ, sendCount_xZ ,sendData_xZ, MeshData);
PackMeshData(sendList_XZ, sendCount_XZ ,sendData_XZ, MeshData);
PackMeshData(sendList_yz, sendCount_yz ,sendData_yz, MeshData);
PackMeshData(sendList_Yz, sendCount_Yz ,sendData_Yz, MeshData);
PackMeshData(sendList_yZ, sendCount_yZ ,sendData_yZ, MeshData);
PackMeshData(sendList_YZ, sendCount_YZ ,sendData_YZ, MeshData);
//......................................................................................
MPI_Sendrecv(sendData_x,sendCount_x,MPI_DOUBLE,rank_x,sendtag,
recvData_X,recvCount_X,MPI_DOUBLE,rank_X,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_X,sendCount_X,MPI_DOUBLE,rank_X,sendtag,
recvData_x,recvCount_x,MPI_DOUBLE,rank_x,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_y,sendCount_y,MPI_DOUBLE,rank_y,sendtag,
recvData_Y,recvCount_Y,MPI_DOUBLE,rank_Y,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_Y,sendCount_Y,MPI_DOUBLE,rank_Y,sendtag,
recvData_y,recvCount_y,MPI_DOUBLE,rank_y,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_z,sendCount_z,MPI_DOUBLE,rank_z,sendtag,
recvData_Z,recvCount_Z,MPI_DOUBLE,rank_Z,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_Z,sendCount_Z,MPI_DOUBLE,rank_Z,sendtag,
recvData_z,recvCount_z,MPI_DOUBLE,rank_z,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_xy,sendCount_xy,MPI_DOUBLE,rank_xy,sendtag,
recvData_XY,recvCount_XY,MPI_DOUBLE,rank_XY,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_XY,sendCount_XY,MPI_DOUBLE,rank_XY,sendtag,
recvData_xy,recvCount_xy,MPI_DOUBLE,rank_xy,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_Xy,sendCount_Xy,MPI_DOUBLE,rank_Xy,sendtag,
recvData_xY,recvCount_xY,MPI_DOUBLE,rank_xY,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_xY,sendCount_xY,MPI_DOUBLE,rank_xY,sendtag,
recvData_Xy,recvCount_Xy,MPI_DOUBLE,rank_Xy,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_xz,sendCount_xz,MPI_DOUBLE,rank_xz,sendtag,
recvData_XZ,recvCount_XZ,MPI_DOUBLE,rank_XZ,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_XZ,sendCount_XZ,MPI_DOUBLE,rank_XZ,sendtag,
recvData_xz,recvCount_xz,MPI_DOUBLE,rank_xz,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_Xz,sendCount_Xz,MPI_DOUBLE,rank_Xz,sendtag,
recvData_xZ,recvCount_xZ,MPI_DOUBLE,rank_xZ,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_xZ,sendCount_xZ,MPI_DOUBLE,rank_xZ,sendtag,
recvData_Xz,recvCount_Xz,MPI_DOUBLE,rank_Xz,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_yz,sendCount_yz,MPI_DOUBLE,rank_yz,sendtag,
recvData_YZ,recvCount_YZ,MPI_DOUBLE,rank_YZ,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_YZ,sendCount_YZ,MPI_DOUBLE,rank_YZ,sendtag,
recvData_yz,recvCount_yz,MPI_DOUBLE,rank_yz,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_Yz,sendCount_Yz,MPI_DOUBLE,rank_Yz,sendtag,
recvData_yZ,recvCount_yZ,MPI_DOUBLE,rank_yZ,recvtag,Comm,MPI_STATUS_IGNORE);
MPI_Sendrecv(sendData_yZ,sendCount_yZ,MPI_DOUBLE,rank_yZ,sendtag,
recvData_Yz,recvCount_Yz,MPI_DOUBLE,rank_Yz,recvtag,Comm,MPI_STATUS_IGNORE);
//........................................................................................
UnpackMeshData(recvList_x, recvCount_x ,recvData_x, MeshData);
UnpackMeshData(recvList_X, recvCount_X ,recvData_X, MeshData);
UnpackMeshData(recvList_y, recvCount_y ,recvData_y, MeshData);
UnpackMeshData(recvList_Y, recvCount_Y ,recvData_Y, MeshData);
UnpackMeshData(recvList_z, recvCount_z ,recvData_z, MeshData);
UnpackMeshData(recvList_Z, recvCount_Z ,recvData_Z, MeshData);
UnpackMeshData(recvList_xy, recvCount_xy ,recvData_xy, MeshData);
UnpackMeshData(recvList_Xy, recvCount_Xy ,recvData_Xy, MeshData);
UnpackMeshData(recvList_xY, recvCount_xY ,recvData_xY, MeshData);
UnpackMeshData(recvList_XY, recvCount_XY ,recvData_XY, MeshData);
UnpackMeshData(recvList_xz, recvCount_xz ,recvData_xz, MeshData);
UnpackMeshData(recvList_Xz, recvCount_Xz ,recvData_Xz, MeshData);
UnpackMeshData(recvList_xZ, recvCount_xZ ,recvData_xZ, MeshData);
UnpackMeshData(recvList_XZ, recvCount_XZ ,recvData_XZ, MeshData);
UnpackMeshData(recvList_yz, recvCount_yz ,recvData_yz, MeshData);
UnpackMeshData(recvList_Yz, recvCount_Yz ,recvData_Yz, MeshData);
UnpackMeshData(recvList_yZ, recvCount_yZ ,recvData_yZ, MeshData);
UnpackMeshData(recvList_YZ, recvCount_YZ ,recvData_YZ, MeshData);
}
Fixing some memory leaks/uninitialized values
2015-08-31 11:30:37 -04:00
refactor Domain
2018-05-16 09:27:04 -04:00
// Ideally stuff below here should be moved somewhere else -- doesn't really belong here
Adding Database
2018-05-15 10:01:14 -04:00
void WriteCheckpoint(const char *FILENAME, const double *cDen, const double *cfq, int Np)
{
int q,n;
double value;
ofstream File(FILENAME,ios::binary);
for (n=0; n<Np; n++){
// Write the two density values
value = cDen[n];
File.write((char*) &value, sizeof(value));
value = cDen[Np+n];
File.write((char*) &value, sizeof(value));
// Write the even distributions
for (q=0; q<19; q++){
value = cfq[q*Np+n];
File.write((char*) &value, sizeof(value));
}
}
File.close();
}
Removed dead code from Domain.cpp, refactored lbpm_sphere_pp
2018-05-16 09:21:06 -04:00
void ReadCheckpoint(char *FILENAME, double *cPhi, double *cfq, int Np)
Adding Database
2018-05-15 10:01:14 -04:00
{
int q=0, n=0;
double value=0;
ifstream File(FILENAME,ios::binary);
for (n=0; n<Np; n++){
File.read((char*) &value, sizeof(value));
Removed dead code from Domain.cpp, refactored lbpm_sphere_pp
2018-05-16 09:21:06 -04:00
cPhi[n] = value;
// Read the distributions
Adding Database
2018-05-15 10:01:14 -04:00
for (q=0; q<19; q++){
File.read((char*) &value, sizeof(value));
cfq[q*Np+n] = value;
}
}
File.close();
}
refactor Domain
2018-05-16 09:27:04 -04:00
inline void ReadBinaryFile(char *FILENAME, double *Data, int N)
{
int n;
double value;
ifstream File(FILENAME,ios::binary);
if (File.good()){
for (n=0; n<N; n++){
// Write the two density values
File.read((char*) &value, sizeof(value));
Data[n] = value;
}
}
else {
for (n=0; n<N; n++) Data[n] = 1.2e-34;
}
File.close();
}
Adding Database
2018-05-15 10:01:14 -04:00
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