diff --git a/workflows/imbibition/InitializeImbibition.sh b/workflows/imbibition/InitializeImbibition.sh new file mode 100755 index 00000000..de9863ec --- /dev/null +++ b/workflows/imbibition/InitializeImbibition.sh @@ -0,0 +1,20 @@ +#!/bin/bash + +# Run morphological analysis and set up input files for media +LABEL="sph1964" +#aprun -n 64 $LBPM_WIA_INSTALL_DIR/bin/lbpm_morph_pp $r > morph.log +echo "Quartile Radius" > poresize.quartiles +grep -A4 Quartile morph.log | tail -4 >> poresize.quartiles +python ~/LBPM-WIA/workflows/imbibition/setup-imbibition.py $LABEL + +FILES=$(ls | grep "drain_") + +for src in $FILES; do + dest=$(echo $src | sed 's/drain_/imb_/g') + echo "Initializing $dest from primary drainage" + cp -r $src $dest + cp Color.in.imbibition $dest/Color.in +done + +exit; +