update cpu ion valence
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429413ce3b
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3e82370d6c
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@ -5,22 +5,17 @@
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Membrane::Membrane(std::shared_ptr <Domain> Dm, int *dvcNeighborList, int Nsites) {
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Np = Nsites;
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initialNeighborList = new int[18*Np];
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ScaLBL_AllocateDeviceMemory((void **)&NeighborList, 18*Np*sizeof(int));
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Lock=false; // unlock the communicator
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//......................................................................................
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// Create a separate copy of the communicator for the device
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MPI_COMM_SCALBL = Dm->Comm.dup();
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Np = Nsites;
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if (Dm->rank() == 0){
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printf("**** Creating membrane data structure ****** \n");
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printf(" Number of active lattice sites (rank = %i): %i \n",Dm->rank(), Np);
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}
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initialNeighborList = new int[18*Np];
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ScaLBL_AllocateDeviceMemory((void **)&NeighborList, 18*Np*sizeof(int));
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Lock=false; // unlock the communicator
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MPI_COMM_SCALBL = Dm->Comm.dup();
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ScaLBL_CopyToHost(initialNeighborList, dvcNeighborList, 18*Np*sizeof(int));
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Dm->Comm.barrier();
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ScaLBL_CopyToDevice(NeighborList, initialNeighborList, 18*Np*sizeof(int));
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ScaLBL_CopyToHost(initialNeighborList, dvcNeighborList, 18*Np*sizeof(int));
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Dm->Comm.barrier();
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ScaLBL_CopyToDevice(NeighborList, initialNeighborList, 18*Np*sizeof(int));
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/* Copy communication lists */
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//......................................................................................
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@ -91,6 +86,11 @@ Membrane::Membrane(std::shared_ptr <Domain> Dm, int *dvcNeighborList, int Nsites
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recvCount_YZ=Dm->recvCount("YZ");
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recvCount_XZ=Dm->recvCount("XZ");
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if (rank == 0){
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printf("**** Creating membrane data structure ****** \n");
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printf(" Number of active lattice sites (rank = %i): %i \n",rank, Np);
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}
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iproc = Dm->iproc();
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jproc = Dm->jproc();
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kproc = Dm->kproc();
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@ -99,7 +99,7 @@ Membrane::Membrane(std::shared_ptr <Domain> Dm, int *dvcNeighborList, int Nsites
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nprocz = Dm->nprocz();
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//BoundaryCondition = Dm->BoundaryCondition;
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//......................................................................................
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if (rank==0) printf(" Create Membrane: copying communication structures...\n");
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ScaLBL_AllocateZeroCopy((void **) &sendbuf_x, 2*5*sendCount_x*sizeof(double)); // Allocate device memory
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ScaLBL_AllocateZeroCopy((void **) &sendbuf_X, 2*5*sendCount_X*sizeof(double)); // Allocate device memory
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ScaLBL_AllocateZeroCopy((void **) &sendbuf_y, 2*5*sendCount_y*sizeof(double)); // Allocate device memory
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@ -1323,7 +1323,7 @@ void Membrane::RecvD3Q7AA(double *dist){
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// Unpack the distributions on the device
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//...................................................................................
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//...Unpacking for x face(q=2)................................
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/* ScaLBL_D3Q7_Membrane_Unpack(2,dvcRecvDist_x, dvcRecvLinks_x,0,linkCount_x[0],recvCount_x,recvbuf_x,dist,Np,coefficient_x);
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ScaLBL_D3Q7_Membrane_Unpack(2,dvcRecvDist_x, dvcRecvLinks_x,0,linkCount_x[0],recvCount_x,recvbuf_x,dist,Np,coefficient_x);
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//...................................................................................
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//...Packing for X face(q=1)................................
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ScaLBL_D3Q7_Membrane_Unpack(1,dvcRecvDist_X, dvcRecvLinks_X,0,linkCount_X[0],recvCount_X,recvbuf_X,dist,Np,coefficient_X);
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@ -1339,7 +1339,7 @@ void Membrane::RecvD3Q7AA(double *dist){
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//...Packing for Z face(q=5)................................
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ScaLBL_D3Q7_Membrane_Unpack(5,dvcRecvDist_Z, dvcRecvLinks_Z,0,linkCount_Z[0],recvCount_Z,recvbuf_Z,dist,Np,coefficient_Z);
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//..................................................................................
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*/
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//...................................................................................
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Lock=false; // unlock the communicator after communications complete
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//...................................................................................
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@ -482,7 +482,7 @@ extern "C" void ScaLBL_D3Q7_Ion_Init_FromFile(double *dist, double *Den,
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extern "C" void ScaLBL_D3Q7_Ion_ChargeDensity(double *Den,
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double *ChargeDensity,
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int IonValence, int ion_component,
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double IonValence, int ion_component,
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int start, int finish, int Np) {
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int n;
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