OilfieldToolsNet/LBPM
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fix several miscellaneous bugs

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This commit is contained in:
Rex Zhe Li 2020-08-20 22:47:10 -04:00
parent 030bec9eba
commit 59ffd7bfd6
4 changed files with 24 additions and 18 deletions
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20
models/IonModel.cpp
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@ -48,6 +48,15 @@ void ScaLBL_IonModel::ReadParams(string filename,int num_iter,int num_iter_Stoke
tau.push_back(0.5+k2_inv*time_conv/(h*1.0e-6)/(h*1.0e-6)*IonDiffusivity[0]);
//--------------------------------------------------------------------------//
// Read domain parameters
if (domain_db->keyExists( "voxel_length" )){//default unit: um/lu
h = domain_db->getScalar<double>( "voxel_length" );
}
BoundaryCondition = 0;
if (domain_db->keyExists( "BC" )){
BoundaryCondition = domain_db->getScalar<int>( "BC" );
}
// LB-Ion Model parameters
//if (ion_db->keyExists( "timestepMax" )){
// timestepMax = ion_db->getScalar<int>( "timestepMax" );
@ -112,14 +121,6 @@ void ScaLBL_IonModel::ReadParams(string filename,int num_iter,int num_iter_Stoke
BoundaryConditionSolid = ion_db->getScalar<int>( "BC_Solid" );
}
// Read domain parameters
if (domain_db->keyExists( "voxel_length" )){//default unit: um/lu
h = domain_db->getScalar<double>( "voxel_length" );
}
BoundaryCondition = 0;
if (domain_db->keyExists( "BC" )){
BoundaryCondition = domain_db->getScalar<int>( "BC" );
}
if (rank==0) printf("*****************************************************\n");
if (rank==0) printf("LB Ion Transport Solver: \n");
@ -275,7 +276,7 @@ void ScaLBL_IonModel::AssignSolidBoundary(double *ion_solid)
label_count_global[idx]=sumReduce( Dm->Comm, label_count[idx]);
if (rank==0){
printf("LB Ion Solver: Ion Solid labels: %lu \n",NLABELS);
printf("LB Ion Solver: number of ion solid labels: %lu \n",NLABELS);
for (unsigned int idx=0; idx<NLABELS; idx++){
VALUE=LabelList[idx];
AFFINITY=AffinityList[idx];
@ -464,6 +465,7 @@ void ScaLBL_IonModel::Run(double *Velocity, double *ElectricField){
void ScaLBL_IonModel::getIonConcentration(){
for (int ic=0; ic<number_ion_species; ic++){
ScaLBL_IonConcentration_Phys(Ci, h, ic, ScaLBL_Comm->FirstInterior(), ScaLBL_Comm->LastInterior(), Np);
ScaLBL_IonConcentration_Phys(Ci, h, ic, 0, ScaLBL_Comm->LastExterior(), Np);
}
DoubleArray PhaseField(Nx,Ny,Nz);

2
models/PoissonSolver.cpp
View File

@ -224,7 +224,7 @@ void ScaLBL_Poisson::AssignSolidBoundary(double *poisson_solid)
label_count_global[idx]=sumReduce( Dm->Comm, label_count[idx]);
if (rank==0){
printf("LB-Poisson Solver: Poisson Solid labels: %lu \n",NLABELS);
printf("LB-Poisson Solver: number of Poisson solid labels: %lu \n",NLABELS);
for (unsigned int idx=0; idx<NLABELS; idx++){
VALUE=LabelList[idx];
AFFINITY=AffinityList[idx];

17
models/StokesModel.cpp
View File

@ -40,6 +40,15 @@ void ScaLBL_StokesModel::ReadParams(string filename,int num_iter){
Ez = 1.0e-3;
//--------------------------------------------------------------------------//
// Read domain parameters
BoundaryCondition = 0;
if (domain_db->keyExists( "BC" )){
BoundaryCondition = domain_db->getScalar<int>( "BC" );
}
if (domain_db->keyExists( "voxel_length" )){//default unit: um/lu
h = domain_db->getScalar<double>( "voxel_length" );
}
// Single-fluid Navier-Stokes Model parameters
//if (stokes_db->keyExists( "timestepMax" )){
// timestepMax = stokes_db->getScalar<int>( "timestepMax" );
@ -76,14 +85,6 @@ void ScaLBL_StokesModel::ReadParams(string filename,int num_iter){
flux = stokes_db->getScalar<double>( "flux" );
}
// Read domain parameters
if (domain_db->keyExists( "BC" )){
BoundaryCondition = domain_db->getScalar<int>( "BC" );
}
if (domain_db->keyExists( "voxel_length" )){//default unit: um/lu
h = domain_db->getScalar<double>( "voxel_length" );
}
// Re-calculate model parameters due to parameter read
mu=(tau-0.5)/3.0;
time_conv = (h*h*1.0e-12)*mu/nu_phys;//time conversion factor from physical to LB unit; [sec/lt]

3
tests/lbpm_electrokinetic_dfh_simulator.cpp
View File

@ -98,6 +98,9 @@ int main(int argc, char **argv)
PoissonSolver.getElectricalPotential();
IonModel.getIonConcentration();
if (rank==0) printf("Maximum timestep is reached and the simulation is completed\n");
if (rank==0) printf("*************************************************************\n");
PROFILE_STOP("Main");
PROFILE_SAVE("lbpm_electrokinetic_simulator",1);
// ****************************************************