From 73ce928dd206090d6074f3566ec0fdc753e0b4b8 Mon Sep 17 00:00:00 2001
From: zherexli <zhe.rex.li@gmail.com>
Date: Tue, 1 Nov 2016 15:55:51 -0400
Subject: [PATCH] Rex: add morphological drainage and imbibition

---
 .../SegmentingImage/Check_SignDist_and_ID.py  | 45 +++++++++++++------
 1 file changed, 31 insertions(+), 14 deletions(-)

diff --git a/workflows/SegmentingImage/Check_SignDist_and_ID.py b/workflows/SegmentingImage/Check_SignDist_and_ID.py
index c7c27ec6..57c7a5bc 100644
--- a/workflows/SegmentingImage/Check_SignDist_and_ID.py
+++ b/workflows/SegmentingImage/Check_SignDist_and_ID.py
@@ -2,6 +2,23 @@
 
 import numpy as np
 import matplotlib.pylab as plt
+#from glob import glob
+import sys
+
+# Check if there is a proper command line argument
+#if len(sys.argv) !=2:
+#    sys.stderr.write('Usage: ' + sys.argv[0] + ' Domain.in\n')
+#    sys.exit()
+## end if
+
+# Read 'Domain.in' file
+f = open('Domain.in','r') # read-only
+lines = f.readlines()
+nprocx, nprocy, nprocz = np.fromstring(lines[0].splitlines()[0],dtype=np.int32,sep=' ')
+nx, ny, nz = np.fromstring(lines[1].splitlines()[0],dtype=np.int32,sep=' ')
+Lx, Ly, Lz = np.fromstring(lines[3].splitlines()[0],dtype=np.float32,sep=' ')
+f.close()
+
 
 lx = 3
 ly = 500
@@ -14,20 +31,20 @@ ID = np.fromfile('ID.00000',dtype = np.uint8)
 ID.shape = (lz+2,ly+2,lx+2)
 
 # Plot
-plt.figure(1)
-plt.title('SignDist Map')
-plt.pcolormesh(SignDist[:,:,2])
-plt.grid(True)
-plt.axis('equal')
-plt.colorbar()
-
-
-plt.figure(2)
-plt.title('ID.xxxxx')
-plt.pcolormesh(ID[:,:,2],cmap='hot')
-plt.grid(True)
-plt.axis('equal')
-plt.show()
+#plt.figure(1)
+#plt.title('SignDist Map')
+#plt.pcolormesh(SignDist[:,:,2])
+#plt.grid(True)
+#plt.axis('equal')
+#plt.colorbar()
+#
+#
+#plt.figure(2)
+#plt.title('ID.xxxxx')
+#plt.pcolormesh(ID[:,:,2],cmap='hot')
+#plt.grid(True)
+#plt.axis('equal')
+#plt.show()