OilfieldToolsNet/LBPM
4
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Working on standalone reproducer for MPI bug

Browse Source
This commit is contained in:
Mark Berrill
2022-02-09 17:01:00 -05:00
parent 2237df73eb
commit 8c448376d9
2 changed files with 64 additions and 68 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
tests/TestCrusher.cpp
View File

@@ -1,6 +1,6 @@
#include <stdio.h>
#include <iostream>
#include "common/ScaLBL.h"
#include "common/Domain.h"
#include "common/MPI.h"

130
tests/TestCrusher2.cpp
View File

@@ -8,34 +8,66 @@
#include <exception>
#include <stdexcept>
#include "common/Array.h"
#include "common/Database.h"
#include "common/Utilities.h"
#include "common/MPI.h"
#include "common/Communication.h"
#include "common/Database.h"
struct RankInfoStruct2 {
int nx; //!< The number of processors in the x direction
int ny; //!< The number of processors in the y direction
int nz; //!< The number of processors in the z direction
int ix; //!< The index of the current process in the x direction
int jy; //!< The index of the current process in the y direction
int kz; //!< The index of the current process in the z direction
int rank[3][3][3]; //!< The rank for the neighbor [i][j][k]
RankInfoStruct2() : RankInfoStruct2( 1, 0, 0, 0 ) {}
RankInfoStruct2(int rank0, int nprocx, int nprocy, int nprocz) {
memset(this, 0, sizeof(RankInfoStruct2));
nx = nprocx;
ny = nprocy;
nz = nprocz;
if (rank0 >= nprocx * nprocy * nprocz) {
ix = -1;
jy = -1;
kz = -1;
for (int i = -1; i <= 1; i++) {
for (int j = -1; j <= 1; j++) {
for (int k = -1; k <= 1; k++) {
rank[i + 1][j + 1][k + 1] = -1;
}
}
}
} else {
ix = rank0 % nprocx;
jy = (rank0 / nprocx) % nprocy;
kz = rank0 / (nprocx * nprocy);
for (int i = -1; i <= 1; i++) {
for (int j = -1; j <= 1; j++) {
for (int k = -1; k <= 1; k++) {
rank[i + 1][j + 1][k + 1] =
getRankForBlock(ix + i, jy + j, kz + k);
}
}
}
ASSERT(rank[1][1][1] == rank0);
}
}
int getRankForBlock(int i, int j, int k) const {
int i2 = (i + nx) % nx;
int j2 = (j + ny) % ny;
int k2 = (k + nz) % nz;
return i2 + j2 * nx + k2 * nx * ny;
}
};
class Domain2 {
public:
Domain2(std::shared_ptr<Database> db, const Utilities::MPI &Communicator) {
Comm = Communicator.dup();
int myrank = Comm.getRank();
initialize(db);
rank_info = RankInfoStruct(myrank, rank_info.nx, rank_info.ny, rank_info.nz);
Comm.barrier();
}
Domain2() = delete;
Domain2(const Domain2 &) = delete;
~Domain2() = default;
private:
// initialize from database
void initialize(std::shared_ptr<Database> db) {
d_db = db;
auto nproc = d_db->getVector<int>("nproc");
auto n = d_db->getVector<int>("n");
auto nproc = db->getVector<int>("nproc");
auto n = db->getVector<int>("n");
ASSERT(n.size() == 3u);
ASSERT(nproc.size() == 3u);
int nx = n[0];
@@ -45,22 +77,19 @@ private:
Ny = ny + 2;
Nz = nz + 2;
N = Nx * Ny * Nz;
// Initialize ranks
int myrank = Comm.getRank();
rank_info = RankInfoStruct(myrank, nproc[0], nproc[1], nproc[2]);
// Fill remaining variables
id = std::vector<signed char>(N, 0);
rank_info = RankInfoStruct2(myrank, nproc[0], nproc[1], nproc[2]);
int nprocs = Comm.getSize();
INSIST(nprocs == nproc[0] * nproc[1] * nproc[2], "Fatal error in processor count!");
}
std::shared_ptr<Database> d_db;
Domain2() = delete;
Domain2(const Domain2 &) = delete;
~Domain2() = default;
public: // Public variables (need to create accessors instead)
std::shared_ptr<Database> database;
int Nx, Ny, Nz, N;
RankInfoStruct rank_info;
RankInfoStruct2 rank_info;
Utilities::MPI Comm; // MPI Communicator for this domain
@@ -94,10 +123,6 @@ public: // Public variables (need to create accessors instead)
inline int rank_Yz() const { return rank_info.rank[1][2][0]; }
inline int rank_yZ() const { return rank_info.rank[1][0][2]; }
//......................................................................................
// Solid indicator function
std::vector<signed char> id;
// Initialize communication data structures within Domain object.
void CommInit() {
int i, j, k, n;
@@ -114,8 +139,6 @@ public: // Public variables (need to create accessors instead)
for (k = 1; k < Nz - 1; k++) {
for (j = 1; j < Ny - 1; j++) {
for (i = 1; i < Nx - 1; i++) {
// Check the phase ID
if (id[k * Nx * Ny + j * Nx + i] > 0) {
// Counts for the six faces
if (i == 1)
sendCount_x++;
@@ -159,7 +182,6 @@ public: // Public variables (need to create accessors instead)
}
}
}
}
// allocate send lists
sendList_x.resize(sendCount_x, 0);
@@ -181,18 +203,14 @@ public: // Public variables (need to create accessors instead)
sendList_YZ.resize(sendCount_YZ, 0);
sendList_XZ.resize(sendCount_XZ, 0);
// Populate the send list
sendCount_x = sendCount_y = sendCount_z = sendCount_X = sendCount_Y =
sendCount_Z = 0;
sendCount_xy = sendCount_yz = sendCount_xz = sendCount_Xy = sendCount_Yz =
sendCount_xZ = 0;
sendCount_xY = sendCount_yZ = sendCount_Xz = sendCount_XY = sendCount_YZ =
sendCount_XZ = 0;
sendCount_x = sendCount_y = sendCount_z = sendCount_X = sendCount_Y = sendCount_Z = 0;
sendCount_xy = sendCount_yz = sendCount_xz = sendCount_Xy = sendCount_Yz = sendCount_xZ = 0;
sendCount_xY = sendCount_yZ = sendCount_Xz = sendCount_XY = sendCount_YZ = sendCount_XZ = 0;
for (k = 1; k < Nz - 1; k++) {
for (j = 1; j < Ny - 1; j++) {
for (i = 1; i < Nx - 1; i++) {
// Local value to send
n = k * Nx * Ny + j * Nx + i;
if (id[n] > 0) {
// Counts for the six faces
if (i == 1)
sendList_x[sendCount_x++] = n;
@@ -236,15 +254,11 @@ public: // Public variables (need to create accessors instead)
}
}
}
}
//......................................................................................
int recvCount_x, recvCount_y, recvCount_z, recvCount_X, recvCount_Y,
recvCount_Z;
int recvCount_xy, recvCount_yz, recvCount_xz, recvCount_Xy, recvCount_Yz,
recvCount_xZ;
int recvCount_xY, recvCount_yZ, recvCount_Xz, recvCount_XY, recvCount_YZ,
recvCount_XZ;
int recvCount_x, recvCount_y, recvCount_z, recvCount_X, recvCount_Y, recvCount_Z;
int recvCount_xy, recvCount_yz, recvCount_xz, recvCount_Xy, recvCount_Yz, recvCount_xZ;
int recvCount_xY, recvCount_yZ, recvCount_Xz, recvCount_XY, recvCount_YZ, recvCount_XZ;
req1[0] = Comm.Isend(&sendCount_x, 1, rank_x(), sendtag + 0);
req2[0] = Comm.Irecv(&recvCount_X, 1, rank_X(), recvtag + 0);
req1[1] = Comm.Isend(&sendCount_X, 1, rank_X(), sendtag + 1);
@@ -400,29 +414,11 @@ int main(int argc, char **argv)
{
Utilities::startup( argc, argv, true );
Utilities::MPI comm( MPI_COMM_WORLD );
int rank = comm.getRank();
{
auto filename = argv[1];
auto input_db = std::make_shared<Database>( filename );
auto db = input_db->getDatabase( "Domain" );
auto Dm = std::make_shared<Domain2>(db,comm);
int Nx = db->getVector<int>( "n" )[0] + 2;
int Ny = db->getVector<int>( "n" )[1] + 2;
int Nz = db->getVector<int>( "n" )[2] + 2;
char LocalRankString[8];
sprintf(LocalRankString,"%05d",rank);
char LocalRankFilename[40];
sprintf(LocalRankFilename,"ID.%05i",rank);
auto id = new char[Nx*Ny*Nz];
for (int k=0;k<Nz;k++){
for (int j=0;j<Ny;j++){
for (int i=0;i<Nx;i++){
int n = k*Nx*Ny+j*Nx+i;
id[n] = 1;
Dm->id[n] = id[n];
}
}
}
Dm->CommInit();
std::cout << "step 1" << std::endl << std::flush;
}