update summit scripts

example/systems/summit/input.db

@@ -0,0 +1,53 @@
+B1;95;0cMRT {
+    tau = 1.0          // relaxation time
+    F = 0, 0, 1e-4     // external body force applied to system
+    timestepMax = 1000 // max number of timesteps
+    din = 1.0
+    dout = 1.0
+    Restart = false
+    flux = 0.0
+}
+
+Color {
+    tauA   = 0.7;     // relaxation time for fluid A
+    tauB   = 0.7;     // relaxation time for fluid B
+    rhoA   = 1.0;     // mass density for fluid A
+    rhoB   = 1.0;     // mass density for fluid B
+    alpha = 1e-3;     // controls interfacial tension between fluids
+    beta  = 0.95;     // controls interface width
+    F = 0, 0, 1.0e-5  // external body force applied to the system
+    Restart = false   // restart from checkpoint file?
+    din = 1.0         // density at inlet (if external BC is applied)
+    dout = 1.0                 // density at outlet (if external BC is applied )
+    timestepMax = 3000         // maximum number of timesteps to simulate
+    flux = 0.0                 // volumetric flux in voxels per timestep (if flux BC is applied)
+    ComponentLabels = 0        // comma separated list of solid mineral labels 
+    ComponentAffinity = -1.0   // comma separated list of phase indicato field value to assign for each mineral label
+}
+
+Domain {
+    nproc = 1, 1, 1        // Number of processors (Npx,Npy,Npz)
+    n = 400, 400, 400      // Size of local domain (Nx,Ny,Nz)
+    nspheres = 1896        // Number of spheres (only needed if using a sphere packing)
+    L = 1, 1, 1            // Length of domain (x,y,z)
+    BC = 0                 // Boundary condition type 
+                           //     BC = 0  for periodic BC
+                           //     BC = 1  for pressure BC (applied in z direction)
+                           //     BC = 4  for flux BC (applied in z direction
+    Filename = "mineralmodel.raw"                    // name of raw binary file to read digital image from 
+    ReadType = "8bit"
+    ReadValues = 0, 1, 2, 3, 4, 5, 6, 7, 8           // list of labels within the binary file (read)
+    WriteValues = 1, -1, -2, -2, -3, -3, -4, -4, -4  // list of labels within the output files (write)
+
+}
+
+Analysis {
+    blobid_interval = 1000      // Frequency to perform blob identification
+    analysis_interval = 1000    // Frequency to perform analysis
+    restart_interval = 2000    // Frequency to write restart data
+    visualization_interval = 2000        // Frequency to write visualization data
+    restart_file = "Restart"    // Filename to use for restart file (will append rank)
+    N_threads    = 4            // Number of threads to use
+    load_balance = "independent" // Load balance method to use: "none", "default", "independent"
+}
+

example/systems/summit/summit-spheres-1g.lsf

@@ -1,5 +1,5 @@
 #!/bin/bash
-#BSUB -P CSC275MCCLURE
+#BSUB -P CSC380
 #BSUB -J spheres
 #BSUB -o spheres.o%J
 #BSUB -W 10
@@ -10,10 +10,9 @@ date
 
 module load gcc cuda 
 
-export SCALBL_DIR=$HOME/summit/build/LBPM-WIA/tests
-
-jsrun -n1 -r1 -g1 -c1 -brs $SCALBL_DIR/GenerateSphereTest 1896
+export LBPM_DIR=/ccs/proj/csc380/mcclurej/install/LBPM/tests
 
+jsrun -n1 -r1 -g1 -c1 -brs $LBPM_DIR/GenerateSphereTest input.db
 
 
 # Create the 1200 GPU case
@@ -45,4 +44,3 @@ for i in `seq -w 0 $NRANKS`; do distfile="$BASEDIST$i"; echo $distfile; cp SignD
 
 
 exit;
-

sample_scripts/configure_summit

@@ -5,6 +5,9 @@
 module load cmake gcc
 module load cuda
 
+export HDF5_DIR=/ccs/proj/csc380/mcclurej/install/hdf5/1.8.12/
+export SILO_DIR=/ccs/proj/csc380/mcclurej/install/silo/4.10.2/
+
 # configure
 rm -rf CMake*
 cmake                                       \
@@ -20,11 +23,11 @@ cmake                                       \
         -D MPIEXEC=mpirun                   \
         -D USE_EXT_MPI_FOR_SERIAL_TESTS:BOOL=TRUE \
     -D USE_HDF5=1                        \
-        -D HDF5_DIRECTORY="/ccs/proj/bip176/TPLs/hdf5/"		   \
-    	-D HDF5_LIB="/ccs/proj/bip176/TPLs/hdf5/lib/libhdf5.a"	   \
+        -D HDF5_DIRECTORY="$HDF5_DIR"		   \
+    	-D HDF5_LIB="$HDF5_DIR/lib/libhdf5.a"	   \
      -D USE_SILO=1                        \
-        -D SILO_LIB="/ccs/proj/bip176/TPLs/silo/lib/libsiloh5.a"    \
-   	-D SILO_DIRECTORY="/ccs/proj/bip176/TPLs/silo/"		     \
+        -D SILO_LIB="$SILO_DIR/lib/libsiloh5.a"    \
+   	-D SILO_DIRECTORY="$SILO_DIR"		     \
     -D USE_DOXYGEN:BOOL=false		        \
     -D USE_TIMER=0			                \
     ~/LBPM-WIA