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Added basename to SegmentMicromodelTiff_Group.py

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This commit is contained in:
James E McClure 2016-10-03 15:10:38 -04:00
parent 71b141c2a9
commit 9f844563ba
1 changed files with 6 additions and 2 deletions
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workflows/SegmentingImage/SegmentMicromodelTiff_Group.py
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@ -5,14 +5,18 @@ import matplotlib.pylab as plt
from glob import glob
from PIL import Image # import Python Imaging Library (PIL)
import os
import sys
basename=sys.argv[1]
plt.rcParams["savefig.directory"] = os.getcwd() # change the default pylab 'savefig' path (i.e. ~/) to cwd
from SegmentMicromodelTiff_utils import convert_image_to_array,read_input_parameters
# Load a group of *.in files
# e.g. 'parameters_1.in' etc.
file_input_group = glob('parameters_*.in')
file_input_group = glob('Micromodel.in')
#output_result = np.empty((0,),dtype=float)
if not file_input_group:
print 'Error: Input files cannot be found ! '
else:
@ -21,7 +25,7 @@ else:
Para = read_input_parameters(file_input_single)
# set your output file names
input_file_idx = file_input_single[file_input_single.find('parameters_')+len('parameters_'):file_input_single.find('.in')]
output_file_name = 'Segmented_image_test_'+input_file_idx+'.dat'
output_file_name = 'Segmented_image_test_'+input_file_idx+'.raw'
imin = Para['imin']
imax = Para['imax']