diff --git a/models/FreeLeeModel.cpp b/models/FreeLeeModel.cpp index 547885b8..5d0f64f6 100644 --- a/models/FreeLeeModel.cpp +++ b/models/FreeLeeModel.cpp @@ -9,7 +9,7 @@ color lattice boltzmann model #include #include -ScaLBL_FreeLeeModel::ScaLBL_FreeLeeModel(int RANK, int NP, MPI_Comm COMM): +ScaLBL_FreeLeeModel::ScaLBL_FreeLeeModel(int RANK, int NP, const Utilities::MPI& COMM): rank(RANK), nprocs(NP), Restart(0),timestep(0),timestepMax(0),tauA(0),tauB(0),rhoA(0),rhoB(0),W(0),gamma(0), Fx(0),Fy(0),Fz(0),flux(0),din(0),dout(0),inletA(0),inletB(0),outletA(0),outletB(0), Nx(0),Ny(0),Nz(0),N(0),Np(0),nprocx(0),nprocy(0),nprocz(0),BoundaryCondition(0),Lx(0),Ly(0),Lz(0),comm(COMM) @@ -107,9 +107,9 @@ void ScaLBL_FreeLeeModel::SetDomain(){ id = new signed char [N]; for (int i=0; iid[i] = 1; // initialize this way - MPI_Barrier(comm); + comm.barrier() Dm->CommInit(); - MPI_Barrier(comm); + comm.barrier() // Read domain parameters rank = Dm->rank(); nprocx = Dm->nprocx(); @@ -206,8 +206,8 @@ void ScaLBL_FreeLeeModel::Create(){ if (rank==0) printf ("Set up memory efficient layout, %i | %i | %i \n", Np, Npad, N); Map.resize(Nx,Ny,Nz); Map.fill(-2); auto neighborList= new int[18*Npad]; - Np = ScaLBL_Comm->MemoryOptimizedLayoutAA(Map,neighborList,Mask->id,Np,2); - MPI_Barrier(comm); + Np = ScaLBL_Comm->MemoryOptimizedLayoutAA(Map,neighborList,Mask->id.data(),Np,2); + comm.barrier() //........................................................................... // MAIN VARIABLES ALLOCATED HERE @@ -335,7 +335,7 @@ void ScaLBL_FreeLeeModel::Initialize(){ ScaLBL_CopyToDevice(Phi,cPhi,N*sizeof(double)); ScaLBL_DeviceBarrier(); - MPI_Barrier(comm); + comm.barrier() } if (rank==0) printf ("Initializing phase field \n"); @@ -371,7 +371,7 @@ void ScaLBL_FreeLeeModel::Run(){ //.......create and start timer............ double starttime,stoptime,cputime; ScaLBL_DeviceBarrier(); - MPI_Barrier(comm); + comm.barrier() starttime = MPI_Wtime(); //......................................... diff --git a/models/FreeLeeModel.h b/models/FreeLeeModel.h index 01fb54c3..437f48b3 100644 --- a/models/FreeLeeModel.h +++ b/models/FreeLeeModel.h @@ -18,7 +18,7 @@ Implementation of Lee et al JCP 2016 lattice boltzmann model class ScaLBL_FreeLeeModel{ public: - ScaLBL_FreeLeeModel(int RANK, int NP, MPI_Comm COMM); + ScaLBL_FreeLeeModel(int RANK, int NP, const Utilities::MPI& COMM); ~ScaLBL_FreeLeeModel(); // functions in they should be run @@ -70,7 +70,7 @@ public: DoubleArray SignDist; private: - MPI_Comm comm; + Utilities::MPI comm; int dist_mem_size; int neighborSize; diff --git a/tests/CMakeLists.txt b/tests/CMakeLists.txt index 2bb810bd..414a13cf 100755 --- a/tests/CMakeLists.txt +++ b/tests/CMakeLists.txt @@ -4,13 +4,8 @@ ADD_LBPM_EXECUTABLE( lbpm_color_simulator ) ADD_LBPM_EXECUTABLE( lbpm_permeability_simulator ) ADD_LBPM_EXECUTABLE( lbpm_greyscale_simulator ) -<<<<<<< HEAD -ADD_LBPM_EXECUTABLE( lbpm_greyscaleColor_simulator ) -ADD_LBPM_EXECUTABLE( lbpm_electrokinetic_SingleFluid_simulator ) -======= ADD_LBPM_EXECUTABLE( lbpm_electrokinetic_SingleFluid_simulator ) ADD_LBPM_EXECUTABLE( lbpm_greyscaleColor_simulator ) ->>>>>>> FOM #ADD_LBPM_EXECUTABLE( lbpm_BGK_simulator ) #ADD_LBPM_EXECUTABLE( lbpm_color_macro_simulator ) ADD_LBPM_EXECUTABLE( lbpm_dfh_simulator ) diff --git a/tests/TestMRT.cpp b/tests/TestMRT.cpp index 5b58130e..172f6c55 100644 --- a/tests/TestMRT.cpp +++ b/tests/TestMRT.cpp @@ -804,13 +804,8 @@ int main(int argc, char **argv) } // **************************************************** -<<<<<<< HEAD comm.barrier(); Utilities::shutdown(); -======= - MPI_Barrier(comm); - MPI_Finalize(); ->>>>>>> electrokinetic // **************************************************** return check;