Merge branch 'morphLBM' of github.com:JamesEMcClure/LBPM-WIA into morphLBM
This commit is contained in:
James E McClure
commit
b0a0b36ea2
@ -326,6 +326,316 @@ double morph_open()
|
||||
}
|
||||
*/
|
||||
|
||||
//***************************************************************************************
|
||||
double MorphDrain(DoubleArray &SignDist, char *id, std::shared_ptr<Domain> Dm, double VoidFraction){
|
||||
// SignDist is the distance to the object that you want to constaing the morphological opening
|
||||
// VoidFraction is the the empty space where the object inst
|
||||
// id is a labeled map
|
||||
// Dm contains information about the domain structure
|
||||
|
||||
int nx = Dm->Nx;
|
||||
int ny = Dm->Ny;
|
||||
int nz = Dm->Nz;
|
||||
int iproc = Dm->iproc();
|
||||
int jproc = Dm->jproc();
|
||||
int kproc = Dm->kproc();
|
||||
int nprocx = Dm->nprocx();
|
||||
int nprocy = Dm->nprocy();
|
||||
int nprocz = Dm->nprocz();
|
||||
int rank = Dm->rank();
|
||||
|
||||
DoubleArray phase(nx,ny,nz);
|
||||
IntArray phase_label(nx,ny,nz);
|
||||
|
||||
int n;
|
||||
double final_void_fraction;
|
||||
double count,countGlobal,totalGlobal;
|
||||
count = 0.f;
|
||||
double maxdist=-200.f;
|
||||
double maxdistGlobal;
|
||||
for (int k=1; k<nz-1; k++){
|
||||
for (int j=1; j<ny-1; j++){
|
||||
for (int i=1; i<nx-1; i++){
|
||||
n = k*nx*ny+j*nx+i;
|
||||
// extract maximum distance for critical radius
|
||||
if ( SignDist(i,j,k) > maxdist) maxdist=SignDist(i,j,k);
|
||||
if ( SignDist(i,j,k) > 0.0 ){
|
||||
count += 1.0;
|
||||
id[n] = 2;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
MPI_Barrier(Dm->Comm);
|
||||
|
||||
// total Global is the number of nodes in the pore-space
|
||||
MPI_Allreduce(&count,&totalGlobal,1,MPI_DOUBLE,MPI_SUM,Dm->Comm);
|
||||
MPI_Allreduce(&maxdist,&maxdistGlobal,1,MPI_DOUBLE,MPI_MAX,Dm->Comm);
|
||||
double volume=double(nprocx*nprocy*nprocz)*double(nx-2)*double(ny-2)*double(nz-2);
|
||||
double volume_fraction=totalGlobal/volume;
|
||||
if (rank==0) printf("Volume fraction for morphological opening: %f \n",volume_fraction);
|
||||
if (rank==0) printf("Maximum pore size: %f \n",maxdistGlobal);
|
||||
|
||||
// Communication buffers
|
||||
char *sendID_x, *sendID_y, *sendID_z, *sendID_X, *sendID_Y, *sendID_Z;
|
||||
char *sendID_xy, *sendID_yz, *sendID_xz, *sendID_Xy, *sendID_Yz, *sendID_xZ;
|
||||
char *sendID_xY, *sendID_yZ, *sendID_Xz, *sendID_XY, *sendID_YZ, *sendID_XZ;
|
||||
char *recvID_x, *recvID_y, *recvID_z, *recvID_X, *recvID_Y, *recvID_Z;
|
||||
char *recvID_xy, *recvID_yz, *recvID_xz, *recvID_Xy, *recvID_Yz, *recvID_xZ;
|
||||
char *recvID_xY, *recvID_yZ, *recvID_Xz, *recvID_XY, *recvID_YZ, *recvID_XZ;
|
||||
// send buffers
|
||||
sendID_x = new char [Dm->sendCount_x];
|
||||
sendID_y = new char [Dm->sendCount_y];
|
||||
sendID_z = new char [Dm->sendCount_z];
|
||||
sendID_X = new char [Dm->sendCount_X];
|
||||
sendID_Y = new char [Dm->sendCount_Y];
|
||||
sendID_Z = new char [Dm->sendCount_Z];
|
||||
sendID_xy = new char [Dm->sendCount_xy];
|
||||
sendID_yz = new char [Dm->sendCount_yz];
|
||||
sendID_xz = new char [Dm->sendCount_xz];
|
||||
sendID_Xy = new char [Dm->sendCount_Xy];
|
||||
sendID_Yz = new char [Dm->sendCount_Yz];
|
||||
sendID_xZ = new char [Dm->sendCount_xZ];
|
||||
sendID_xY = new char [Dm->sendCount_xY];
|
||||
sendID_yZ = new char [Dm->sendCount_yZ];
|
||||
sendID_Xz = new char [Dm->sendCount_Xz];
|
||||
sendID_XY = new char [Dm->sendCount_XY];
|
||||
sendID_YZ = new char [Dm->sendCount_YZ];
|
||||
sendID_XZ = new char [Dm->sendCount_XZ];
|
||||
//......................................................................................
|
||||
// recv buffers
|
||||
recvID_x = new char [Dm->recvCount_x];
|
||||
recvID_y = new char [Dm->recvCount_y];
|
||||
recvID_z = new char [Dm->recvCount_z];
|
||||
recvID_X = new char [Dm->recvCount_X];
|
||||
recvID_Y = new char [Dm->recvCount_Y];
|
||||
recvID_Z = new char [Dm->recvCount_Z];
|
||||
recvID_xy = new char [Dm->recvCount_xy];
|
||||
recvID_yz = new char [Dm->recvCount_yz];
|
||||
recvID_xz = new char [Dm->recvCount_xz];
|
||||
recvID_Xy = new char [Dm->recvCount_Xy];
|
||||
recvID_xZ = new char [Dm->recvCount_xZ];
|
||||
recvID_xY = new char [Dm->recvCount_xY];
|
||||
recvID_yZ = new char [Dm->recvCount_yZ];
|
||||
recvID_Yz = new char [Dm->recvCount_Yz];
|
||||
recvID_Xz = new char [Dm->recvCount_Xz];
|
||||
recvID_XY = new char [Dm->recvCount_XY];
|
||||
recvID_YZ = new char [Dm->recvCount_YZ];
|
||||
recvID_XZ = new char [Dm->recvCount_XZ];
|
||||
//......................................................................................
|
||||
int sendtag,recvtag;
|
||||
sendtag = recvtag = 7;
|
||||
|
||||
int x,y,z;
|
||||
int ii,jj,kk;
|
||||
int Nx = nx;
|
||||
int Ny = ny;
|
||||
int Nz = nz;
|
||||
|
||||
double void_fraction_old=1.0;
|
||||
double void_fraction_new=1.0;
|
||||
double void_fraction_diff_old = 1.0;
|
||||
double void_fraction_diff_new = 1.0;
|
||||
|
||||
// Increase the critical radius until the target saturation is met
|
||||
double deltaR=0.05; // amount to change the radius in voxel units
|
||||
double Rcrit_old;
|
||||
|
||||
double GlobalNumber = 1.f;
|
||||
int imin,jmin,kmin,imax,jmax,kmax;
|
||||
|
||||
double Rcrit_new = maxdistGlobal;
|
||||
//if (argc>2){
|
||||
// Rcrit_new = strtod(argv[2],NULL);
|
||||
// if (rank==0) printf("Max. distance =%f, Initial critical radius = %f \n",maxdistGlobal,Rcrit_new);
|
||||
//}
|
||||
|
||||
while (void_fraction_new > VoidFraction)
|
||||
{
|
||||
void_fraction_diff_old = void_fraction_diff_new;
|
||||
void_fraction_old = void_fraction_new;
|
||||
Rcrit_old = Rcrit_new;
|
||||
Rcrit_new -= deltaR*Rcrit_old;
|
||||
int Window=round(Rcrit_new);
|
||||
if (Window == 0) Window = 1; // If Window = 0 at the begining, after the following process will have sw=1.0
|
||||
// and sw<Sw will be immediately broken
|
||||
double LocalNumber=0.f;
|
||||
for(int k=0; k<Nz; k++){
|
||||
for(int j=0; j<Ny; j++){
|
||||
for(int i=0; i<Nx; i++){
|
||||
n = k*nx*ny + j*nx+i;
|
||||
if (SignDist(i,j,k) > Rcrit_new){
|
||||
// loop over the window and update
|
||||
imin=max(1,i-Window);
|
||||
jmin=max(1,j-Window);
|
||||
kmin=max(1,k-Window);
|
||||
imax=min(Nx-1,i+Window);
|
||||
jmax=min(Ny-1,j+Window);
|
||||
kmax=min(Nz-1,k+Window);
|
||||
for (kk=kmin; kk<kmax; kk++){
|
||||
for (jj=jmin; jj<jmax; jj++){
|
||||
for (ii=imin; ii<imax; ii++){
|
||||
int nn = kk*nx*ny+jj*nx+ii;
|
||||
double dsq = double((ii-i)*(ii-i)+(jj-j)*(jj-j)+(kk-k)*(kk-k));
|
||||
if (id[nn] == 2 && dsq <= Rcrit_new*Rcrit_new){
|
||||
LocalNumber+=1.0;
|
||||
id[nn]=1;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
// move on
|
||||
}
|
||||
}
|
||||
}
|
||||
// Pack and send the updated ID values
|
||||
PackID(Dm->sendList_x, Dm->sendCount_x ,sendID_x, id);
|
||||
PackID(Dm->sendList_X, Dm->sendCount_X ,sendID_X, id);
|
||||
PackID(Dm->sendList_y, Dm->sendCount_y ,sendID_y, id);
|
||||
PackID(Dm->sendList_Y, Dm->sendCount_Y ,sendID_Y, id);
|
||||
PackID(Dm->sendList_z, Dm->sendCount_z ,sendID_z, id);
|
||||
PackID(Dm->sendList_Z, Dm->sendCount_Z ,sendID_Z, id);
|
||||
PackID(Dm->sendList_xy, Dm->sendCount_xy ,sendID_xy, id);
|
||||
PackID(Dm->sendList_Xy, Dm->sendCount_Xy ,sendID_Xy, id);
|
||||
PackID(Dm->sendList_xY, Dm->sendCount_xY ,sendID_xY, id);
|
||||
PackID(Dm->sendList_XY, Dm->sendCount_XY ,sendID_XY, id);
|
||||
PackID(Dm->sendList_xz, Dm->sendCount_xz ,sendID_xz, id);
|
||||
PackID(Dm->sendList_Xz, Dm->sendCount_Xz ,sendID_Xz, id);
|
||||
PackID(Dm->sendList_xZ, Dm->sendCount_xZ ,sendID_xZ, id);
|
||||
PackID(Dm->sendList_XZ, Dm->sendCount_XZ ,sendID_XZ, id);
|
||||
PackID(Dm->sendList_yz, Dm->sendCount_yz ,sendID_yz, id);
|
||||
PackID(Dm->sendList_Yz, Dm->sendCount_Yz ,sendID_Yz, id);
|
||||
PackID(Dm->sendList_yZ, Dm->sendCount_yZ ,sendID_yZ, id);
|
||||
PackID(Dm->sendList_YZ, Dm->sendCount_YZ ,sendID_YZ, id);
|
||||
//......................................................................................
|
||||
MPI_Sendrecv(sendID_x,Dm->sendCount_x,MPI_CHAR,Dm->rank_x(),sendtag,
|
||||
recvID_X,Dm->recvCount_X,MPI_CHAR,Dm->rank_X(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_X,Dm->sendCount_X,MPI_CHAR,Dm->rank_X(),sendtag,
|
||||
recvID_x,Dm->recvCount_x,MPI_CHAR,Dm->rank_x(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_y,Dm->sendCount_y,MPI_CHAR,Dm->rank_y(),sendtag,
|
||||
recvID_Y,Dm->recvCount_Y,MPI_CHAR,Dm->rank_Y(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_Y,Dm->sendCount_Y,MPI_CHAR,Dm->rank_Y(),sendtag,
|
||||
recvID_y,Dm->recvCount_y,MPI_CHAR,Dm->rank_y(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_z,Dm->sendCount_z,MPI_CHAR,Dm->rank_z(),sendtag,
|
||||
recvID_Z,Dm->recvCount_Z,MPI_CHAR,Dm->rank_Z(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_Z,Dm->sendCount_Z,MPI_CHAR,Dm->rank_Z(),sendtag,
|
||||
recvID_z,Dm->recvCount_z,MPI_CHAR,Dm->rank_z(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_xy,Dm->sendCount_xy,MPI_CHAR,Dm->rank_xy(),sendtag,
|
||||
recvID_XY,Dm->recvCount_XY,MPI_CHAR,Dm->rank_XY(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_XY,Dm->sendCount_XY,MPI_CHAR,Dm->rank_XY(),sendtag,
|
||||
recvID_xy,Dm->recvCount_xy,MPI_CHAR,Dm->rank_xy(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_Xy,Dm->sendCount_Xy,MPI_CHAR,Dm->rank_Xy(),sendtag,
|
||||
recvID_xY,Dm->recvCount_xY,MPI_CHAR,Dm->rank_xY(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_xY,Dm->sendCount_xY,MPI_CHAR,Dm->rank_xY(),sendtag,
|
||||
recvID_Xy,Dm->recvCount_Xy,MPI_CHAR,Dm->rank_Xy(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_xz,Dm->sendCount_xz,MPI_CHAR,Dm->rank_xz(),sendtag,
|
||||
recvID_XZ,Dm->recvCount_XZ,MPI_CHAR,Dm->rank_XZ(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_XZ,Dm->sendCount_XZ,MPI_CHAR,Dm->rank_XZ(),sendtag,
|
||||
recvID_xz,Dm->recvCount_xz,MPI_CHAR,Dm->rank_xz(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_Xz,Dm->sendCount_Xz,MPI_CHAR,Dm->rank_Xz(),sendtag,
|
||||
recvID_xZ,Dm->recvCount_xZ,MPI_CHAR,Dm->rank_xZ(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_xZ,Dm->sendCount_xZ,MPI_CHAR,Dm->rank_xZ(),sendtag,
|
||||
recvID_Xz,Dm->recvCount_Xz,MPI_CHAR,Dm->rank_Xz(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_yz,Dm->sendCount_yz,MPI_CHAR,Dm->rank_yz(),sendtag,
|
||||
recvID_YZ,Dm->recvCount_YZ,MPI_CHAR,Dm->rank_YZ(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_YZ,Dm->sendCount_YZ,MPI_CHAR,Dm->rank_YZ(),sendtag,
|
||||
recvID_yz,Dm->recvCount_yz,MPI_CHAR,Dm->rank_yz(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_Yz,Dm->sendCount_Yz,MPI_CHAR,Dm->rank_Yz(),sendtag,
|
||||
recvID_yZ,Dm->recvCount_yZ,MPI_CHAR,Dm->rank_yZ(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_yZ,Dm->sendCount_yZ,MPI_CHAR,Dm->rank_yZ(),sendtag,
|
||||
recvID_Yz,Dm->recvCount_Yz,MPI_CHAR,Dm->rank_Yz(),recvtag,Dm->Comm,MPI_STATUS_IGNORE);
|
||||
//......................................................................................
|
||||
UnpackID(Dm->recvList_x, Dm->recvCount_x ,recvID_x, id);
|
||||
UnpackID(Dm->recvList_X, Dm->recvCount_X ,recvID_X, id);
|
||||
UnpackID(Dm->recvList_y, Dm->recvCount_y ,recvID_y, id);
|
||||
UnpackID(Dm->recvList_Y, Dm->recvCount_Y ,recvID_Y, id);
|
||||
UnpackID(Dm->recvList_z, Dm->recvCount_z ,recvID_z, id);
|
||||
UnpackID(Dm->recvList_Z, Dm->recvCount_Z ,recvID_Z, id);
|
||||
UnpackID(Dm->recvList_xy, Dm->recvCount_xy ,recvID_xy, id);
|
||||
UnpackID(Dm->recvList_Xy, Dm->recvCount_Xy ,recvID_Xy, id);
|
||||
UnpackID(Dm->recvList_xY, Dm->recvCount_xY ,recvID_xY, id);
|
||||
UnpackID(Dm->recvList_XY, Dm->recvCount_XY ,recvID_XY, id);
|
||||
UnpackID(Dm->recvList_xz, Dm->recvCount_xz ,recvID_xz, id);
|
||||
UnpackID(Dm->recvList_Xz, Dm->recvCount_Xz ,recvID_Xz, id);
|
||||
UnpackID(Dm->recvList_xZ, Dm->recvCount_xZ ,recvID_xZ, id);
|
||||
UnpackID(Dm->recvList_XZ, Dm->recvCount_XZ ,recvID_XZ, id);
|
||||
UnpackID(Dm->recvList_yz, Dm->recvCount_yz ,recvID_yz, id);
|
||||
UnpackID(Dm->recvList_Yz, Dm->recvCount_Yz ,recvID_Yz, id);
|
||||
UnpackID(Dm->recvList_yZ, Dm->recvCount_yZ ,recvID_yZ, id);
|
||||
UnpackID(Dm->recvList_YZ, Dm->recvCount_YZ ,recvID_YZ, id);
|
||||
//......................................................................................
|
||||
MPI_Allreduce(&LocalNumber,&GlobalNumber,1,MPI_DOUBLE,MPI_SUM,Dm->Comm);
|
||||
|
||||
for (int k=1; k<nz-1; k++){
|
||||
for (int j=1; j<ny-1; j++){
|
||||
for (int i=1; i<nx-1; i++){
|
||||
n=k*nx*ny+j*nx+i;
|
||||
if (id[n] == 1){
|
||||
phase(i,j,k) = 1.0;
|
||||
}
|
||||
else
|
||||
phase(i,j,k) = -1.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Extract only the connected part
|
||||
BlobIDstruct new_index;
|
||||
double vF=0.0; double vS=0.0;
|
||||
ComputeGlobalBlobIDs(nx-2,ny-2,nz-2,Dm->rank_info,phase,SignDist,vF,vS,phase_label,Dm->Comm);
|
||||
MPI_Barrier(Dm->Comm);
|
||||
|
||||
for (int k=1; k<nz-1; k++){
|
||||
for (int j=1; j<ny-1; j++){
|
||||
for (int i=1; i<nx-1; i++){
|
||||
n=k*nx*ny+j*nx+i;
|
||||
if (id[n] == 1 && phase_label(i,j,k) > 1){
|
||||
id[n] = 2;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
count = 0.f;
|
||||
for (int k=1; k<nz-1; k++){
|
||||
for (int j=1; j<ny-1; j++){
|
||||
for (int i=1; i<nx-1; i++){
|
||||
n=k*nx*ny+j*nx+i;
|
||||
if (id[n] == 2){
|
||||
count+=1.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
MPI_Allreduce(&count,&countGlobal,1,MPI_DOUBLE,MPI_SUM,Dm->Comm);
|
||||
void_fraction_new = countGlobal/totalGlobal;
|
||||
void_fraction_diff_new = abs(void_fraction_new-VoidFraction);
|
||||
if (rank==0){
|
||||
printf(" %f ",void_fraction_new);
|
||||
printf(" %f\n",Rcrit_new);
|
||||
}
|
||||
}
|
||||
|
||||
if (void_fraction_diff_new<void_fraction_diff_old){
|
||||
final_void_fraction=void_fraction_new;
|
||||
if (rank==0){
|
||||
printf("Final void fraction =%f\n",void_fraction_new);
|
||||
printf("Final critical radius=%f\n",Rcrit_new);
|
||||
}
|
||||
}
|
||||
else{
|
||||
final_void_fraction=void_fraction_old;
|
||||
if (rank==0){
|
||||
printf("Final void fraction=%f\n",void_fraction_old);
|
||||
printf("Final critical radius=%f\n",Rcrit_old);
|
||||
}
|
||||
}
|
||||
return final_void_fraction;
|
||||
}
|
||||
|
||||
double MorphGrow(DoubleArray &BoundaryDist, DoubleArray &Dist, Array<char> &id, std::shared_ptr<Domain> Dm, double TargetGrowth){
|
||||
|
||||
int Nx = Dm->Nx;
|
||||
|
||||
@ -1,6 +1,8 @@
|
||||
// Morphological opening routine
|
||||
#include "common/Array.h"
|
||||
#include "common/Domain.h"
|
||||
#include "analysis/runAnalysis.h"
|
||||
|
||||
double MorphOpen(DoubleArray &SignDist, char *id, std::shared_ptr<Domain> Dm, double VoidFraction);
|
||||
double MorphDrain(DoubleArray &SignDist, char *id, std::shared_ptr<Domain> Dm, double VoidFraction);
|
||||
double MorphGrow(DoubleArray &BoundaryDist, DoubleArray &Dist, Array<char> &id, std::shared_ptr<Domain> Dm, double TargetVol);
|
||||
@ -12,471 +12,186 @@
|
||||
#include "common/Array.h"
|
||||
#include "common/Domain.h"
|
||||
#include "analysis/distance.h"
|
||||
#include "analysis/morphology.h"
|
||||
#include "analysis/runAnalysis.h"
|
||||
|
||||
//*************************************************************************
|
||||
// Morpohological drainage pre-processor
|
||||
// Generate states on primary drainage using morphological approach
|
||||
// Morpohologica pre-processor
|
||||
// Initialize phase distribution using morphological approach
|
||||
// Signed distance function is used to determine fluid configuration
|
||||
//*************************************************************************
|
||||
inline void PackID(int *list, int count, char *sendbuf, char *ID){
|
||||
// Fill in the phase ID values from neighboring processors
|
||||
// This packs up the values that need to be sent from one processor to another
|
||||
int idx,n;
|
||||
|
||||
for (idx=0; idx<count; idx++){
|
||||
n = list[idx];
|
||||
sendbuf[idx] = ID[n];
|
||||
}
|
||||
}
|
||||
//***************************************************************************************
|
||||
|
||||
inline void UnpackID(int *list, int count, char *recvbuf, char *ID){
|
||||
// Fill in the phase ID values from neighboring processors
|
||||
// This unpacks the values once they have been recieved from neighbors
|
||||
int idx,n;
|
||||
|
||||
for (idx=0; idx<count; idx++){
|
||||
n = list[idx];
|
||||
ID[n] = recvbuf[idx];
|
||||
}
|
||||
}
|
||||
|
||||
//***************************************************************************************
|
||||
|
||||
|
||||
int main(int argc, char **argv)
|
||||
{
|
||||
// Initialize MPI
|
||||
int rank, nprocs;
|
||||
MPI_Init(&argc,&argv);
|
||||
MPI_Comm comm = MPI_COMM_WORLD;
|
||||
MPI_Comm comm = MPI_COMM_WORLD;
|
||||
MPI_Comm_rank(comm,&rank);
|
||||
MPI_Comm_size(comm,&nprocs);
|
||||
{
|
||||
//.......................................................................
|
||||
// Reading the domain information file
|
||||
//.......................................................................
|
||||
int nprocx, nprocy, nprocz, nx, ny, nz, nspheres;
|
||||
double Lx, Ly, Lz;
|
||||
int i,j,k,n;
|
||||
int BC=0;
|
||||
// char fluidValue,solidValue;
|
||||
int MAXTIME=1000;
|
||||
int READ_FROM_BLOCK=0;
|
||||
|
||||
//.......................................................................
|
||||
// Reading the domain information file
|
||||
//.......................................................................
|
||||
int nprocx, nprocy, nprocz, nx, ny, nz, nspheres;
|
||||
double Lx, Ly, Lz;
|
||||
int i,j,k,n;
|
||||
int BC=0;
|
||||
char LocalRankString[8];
|
||||
char LocalRankFilename[40];
|
||||
|
||||
string filename;
|
||||
if (argc > 1){
|
||||
filename=argv[1];
|
||||
}
|
||||
else ERROR("No input database provided\n");
|
||||
// read the input database
|
||||
auto db = std::make_shared<Database>( filename );
|
||||
auto domain_db = db->getDatabase( "Domain" );
|
||||
|
||||
// Read domain parameters
|
||||
auto L = domain_db->getVector<double>( "L" );
|
||||
auto size = domain_db->getVector<int>( "n" );
|
||||
auto nproc = domain_db->getVector<int>( "nproc" );
|
||||
double SW = domain_db->getScalar<double>( "Sw" );
|
||||
|
||||
nx = size[0];
|
||||
ny = size[1];
|
||||
nz = size[2];
|
||||
nprocx = nproc[0];
|
||||
nprocy = nproc[1];
|
||||
nprocz = nproc[2];
|
||||
|
||||
// Check that the number of processors >= the number of ranks
|
||||
if ( rank==0 ) {
|
||||
printf("Number of MPI ranks required: %i \n", nprocx*nprocy*nprocz);
|
||||
printf("Number of MPI ranks used: %i \n", nprocs);
|
||||
printf("Full domain size: %i x %i x %i \n",nx*nprocx,ny*nprocy,nz*nprocz);
|
||||
}
|
||||
if ( nprocs < nprocx*nprocy*nprocz ){
|
||||
ERROR("Insufficient number of processors");
|
||||
}
|
||||
|
||||
char LocalRankFilename[40];
|
||||
|
||||
int BoundaryCondition=1;
|
||||
Domain Dm(domain_db,comm);
|
||||
|
||||
nx+=2; ny+=2; nz+=2;
|
||||
int N = nx*ny*nz;
|
||||
char *id;
|
||||
id = new char[N];
|
||||
|
||||
|
||||
// Define communication sub-domain -- everywhere
|
||||
for (int k=0; k<nz; k++){
|
||||
for (int j=0; j<ny; j++){
|
||||
for (int i=0; i<nx; i++){
|
||||
n = k*nx*ny+j*nx+i;
|
||||
Dm.id[n] = 1;
|
||||
}
|
||||
string filename;
|
||||
double Rcrit_new, SW;
|
||||
if (argc > 1){
|
||||
filename=argv[1];
|
||||
Rcrit_new=0.f;
|
||||
//SW=strtod(argv[2],NULL);
|
||||
}
|
||||
}
|
||||
else ERROR("No input database provided\n");
|
||||
// read the input database
|
||||
auto db = std::make_shared<Database>( filename );
|
||||
auto domain_db = db->getDatabase( "Domain" );
|
||||
|
||||
Dm.CommInit();
|
||||
// Read domain parameters
|
||||
auto L = domain_db->getVector<double>( "L" );
|
||||
auto size = domain_db->getVector<int>( "n" );
|
||||
auto nproc = domain_db->getVector<int>( "nproc" );
|
||||
auto ReadValues = domain_db->getVector<char>( "ReadValues" );
|
||||
auto WriteValues = domain_db->getVector<char>( "WriteValues" );
|
||||
SW = domain_db->getScalar<double>("Sw");
|
||||
|
||||
sprintf(LocalRankFilename,"ID.%05i",rank);
|
||||
size_t readID;
|
||||
FILE *IDFILE = fopen(LocalRankFilename,"rb");
|
||||
if (IDFILE==NULL) ERROR("Error opening file: ID.xxxxx");
|
||||
readID=fread(id,1,N,IDFILE);
|
||||
if (readID != size_t(N)) printf("lbpm_morphdrain_pp: Error reading ID (rank=%i) \n",rank);
|
||||
fclose(IDFILE);
|
||||
// Generate the NWP configuration
|
||||
//if (rank==0) printf("Initializing morphological distribution with critical radius %f \n", Rcrit);
|
||||
if (rank==0) printf("Performing morphological opening with target saturation %f \n", SW);
|
||||
// GenerateResidual(id,nx,ny,nz,Saturation);
|
||||
|
||||
nx = size[0];
|
||||
ny = size[1];
|
||||
nz = size[2];
|
||||
nprocx = nproc[0];
|
||||
nprocy = nproc[1];
|
||||
nprocz = nproc[2];
|
||||
|
||||
int xdim,ydim,zdim;
|
||||
xdim=Dm.Nx-2;
|
||||
ydim=Dm.Ny-2;
|
||||
zdim=Dm.Nz-2;
|
||||
fillHalo<double> fillData(Dm.Comm, Dm.rank_info,{xdim,ydim,zdim},{1,1,1},0,1);
|
||||
|
||||
// Generate the signed distance map
|
||||
// Initialize the domain and communication
|
||||
Array<char> id_solid(nx,ny,nz);
|
||||
DoubleArray SignDist(nx,ny,nz);
|
||||
int N = (nx+2)*(ny+2)*(nz+2);
|
||||
|
||||
// Solve for the position of the solid phase
|
||||
for (int k=0;k<nz;k++){
|
||||
for (int j=0;j<ny;j++){
|
||||
for (int i=0;i<nx;i++){
|
||||
int n = k*nx*ny+j*nx+i;
|
||||
// Initialize the solid phase
|
||||
if (id[n] > 0) id_solid(i,j,k) = 1;
|
||||
else id_solid(i,j,k) = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
// Initialize the signed distance function
|
||||
for (int k=0;k<nz;k++){
|
||||
for (int j=0;j<ny;j++){
|
||||
for (int i=0;i<nx;i++){
|
||||
int n = k*nx*ny+j*nx+i;
|
||||
// Initialize distance to +/- 1
|
||||
SignDist(i,j,k) = 2.0*double(id_solid(i,j,k))-1.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
std::shared_ptr<Domain> Dm (new Domain(domain_db,comm));
|
||||
// std::shared_ptr<Domain> Dm (new Domain(nx,ny,nz,rank,nprocx,nprocy,nprocz,Lx,Ly,Lz,BC));
|
||||
for (n=0; n<N; n++) Dm->id[n]=1;
|
||||
Dm->CommInit();
|
||||
|
||||
if (rank==0) printf("Initialized solid phase -- Converting to Signed Distance function \n");
|
||||
CalcDist(SignDist,id_solid,Dm);
|
||||
char *id;
|
||||
id = new char [N];
|
||||
sprintf(LocalRankFilename,"ID.%05i",rank);
|
||||
size_t readID;
|
||||
FILE *IDFILE = fopen(LocalRankFilename,"rb");
|
||||
if (IDFILE==NULL) ERROR("Error opening file: ID.xxxxx");
|
||||
readID=fread(id,1,N,IDFILE);
|
||||
if (readID != size_t(N)) printf("lbpm_morphopen_pp: Error reading ID (rank=%i) \n",rank);
|
||||
fclose(IDFILE);
|
||||
|
||||
/* // Read the signed distance from file
|
||||
sprintf(LocalRankFilename,"SignDist.%05i",rank);
|
||||
FILE *DIST = fopen(LocalRankFilename,"rb");
|
||||
size_t ReadSignDist;
|
||||
ReadSignDist=fread(SignDist.data(),8,N,DIST);
|
||||
if (ReadSignDist != size_t(N)) printf("lbpm_morphdrain_pp: Error reading signed distance function (rank=%i)\n",rank);
|
||||
fclose(DIST);
|
||||
*/
|
||||
fillData.fill(SignDist);
|
||||
|
||||
Dm.CommInit();
|
||||
int iproc = Dm.iproc();
|
||||
int jproc = Dm.jproc();
|
||||
int kproc = Dm.kproc();
|
||||
nx+=2; ny+=2; nz+=2;
|
||||
// Generate the signed distance map
|
||||
// Initialize the domain and communication
|
||||
Array<char> id_solid(nx,ny,nz);
|
||||
DoubleArray SignDist(nx,ny,nz);
|
||||
|
||||
// Generate the NWP configuration
|
||||
//if (rank==0) printf("Performing morphological drainage with critical radius %f \n", Rcrit);
|
||||
if (rank==0) printf("Performing morphological drainage with target saturation %f \n", SW);
|
||||
// GenerateResidual(id,nx,ny,nz,Saturation);
|
||||
|
||||
// Communication buffers
|
||||
char *sendID_x, *sendID_y, *sendID_z, *sendID_X, *sendID_Y, *sendID_Z;
|
||||
char *sendID_xy, *sendID_yz, *sendID_xz, *sendID_Xy, *sendID_Yz, *sendID_xZ;
|
||||
char *sendID_xY, *sendID_yZ, *sendID_Xz, *sendID_XY, *sendID_YZ, *sendID_XZ;
|
||||
char *recvID_x, *recvID_y, *recvID_z, *recvID_X, *recvID_Y, *recvID_Z;
|
||||
char *recvID_xy, *recvID_yz, *recvID_xz, *recvID_Xy, *recvID_Yz, *recvID_xZ;
|
||||
char *recvID_xY, *recvID_yZ, *recvID_Xz, *recvID_XY, *recvID_YZ, *recvID_XZ;
|
||||
// send buffers
|
||||
sendID_x = new char [Dm.sendCount_x];
|
||||
sendID_y = new char [Dm.sendCount_y];
|
||||
sendID_z = new char [Dm.sendCount_z];
|
||||
sendID_X = new char [Dm.sendCount_X];
|
||||
sendID_Y = new char [Dm.sendCount_Y];
|
||||
sendID_Z = new char [Dm.sendCount_Z];
|
||||
sendID_xy = new char [Dm.sendCount_xy];
|
||||
sendID_yz = new char [Dm.sendCount_yz];
|
||||
sendID_xz = new char [Dm.sendCount_xz];
|
||||
sendID_Xy = new char [Dm.sendCount_Xy];
|
||||
sendID_Yz = new char [Dm.sendCount_Yz];
|
||||
sendID_xZ = new char [Dm.sendCount_xZ];
|
||||
sendID_xY = new char [Dm.sendCount_xY];
|
||||
sendID_yZ = new char [Dm.sendCount_yZ];
|
||||
sendID_Xz = new char [Dm.sendCount_Xz];
|
||||
sendID_XY = new char [Dm.sendCount_XY];
|
||||
sendID_YZ = new char [Dm.sendCount_YZ];
|
||||
sendID_XZ = new char [Dm.sendCount_XZ];
|
||||
//......................................................................................
|
||||
// recv buffers
|
||||
recvID_x = new char [Dm.recvCount_x];
|
||||
recvID_y = new char [Dm.recvCount_y];
|
||||
recvID_z = new char [Dm.recvCount_z];
|
||||
recvID_X = new char [Dm.recvCount_X];
|
||||
recvID_Y = new char [Dm.recvCount_Y];
|
||||
recvID_Z = new char [Dm.recvCount_Z];
|
||||
recvID_xy = new char [Dm.recvCount_xy];
|
||||
recvID_yz = new char [Dm.recvCount_yz];
|
||||
recvID_xz = new char [Dm.recvCount_xz];
|
||||
recvID_Xy = new char [Dm.recvCount_Xy];
|
||||
recvID_xZ = new char [Dm.recvCount_xZ];
|
||||
recvID_xY = new char [Dm.recvCount_xY];
|
||||
recvID_yZ = new char [Dm.recvCount_yZ];
|
||||
recvID_Yz = new char [Dm.recvCount_Yz];
|
||||
recvID_Xz = new char [Dm.recvCount_Xz];
|
||||
recvID_XY = new char [Dm.recvCount_XY];
|
||||
recvID_YZ = new char [Dm.recvCount_YZ];
|
||||
recvID_XZ = new char [Dm.recvCount_XZ];
|
||||
//......................................................................................
|
||||
int sendtag,recvtag;
|
||||
sendtag = recvtag = 7;
|
||||
|
||||
int x,y,z;
|
||||
int ii,jj,kk;
|
||||
int Nx = nx;
|
||||
int Ny = ny;
|
||||
int Nz = nz;
|
||||
double GlobalNumber = 1.f;
|
||||
|
||||
double count,countGlobal,totalGlobal;
|
||||
count = 0.f;
|
||||
for (int k=0; k<nz; k++){
|
||||
for (int j=0; j<ny; j++){
|
||||
for (int i=0; i<nx; i++){
|
||||
n = k*nx*ny+j*nx+i;
|
||||
if (SignDist(i,j,k) < 0.0) id[n] = 0;
|
||||
else{
|
||||
// initially saturated with wetting phase
|
||||
id[n] = 2;
|
||||
count+=1.0;
|
||||
// Solve for the position of the solid phase
|
||||
for (int k=0;k<nz;k++){
|
||||
for (int j=0;j<ny;j++){
|
||||
for (int i=0;i<nx;i++){
|
||||
int n = k*nx*ny+j*nx+i;
|
||||
// Initialize the solid phase
|
||||
if (id[n] > 0) id_solid(i,j,k) = 1;
|
||||
else id_solid(i,j,k) = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
// total Global is the number of nodes in the pore-space
|
||||
MPI_Allreduce(&count,&totalGlobal,1,MPI_DOUBLE,MPI_SUM,comm);
|
||||
double porosity=totalGlobal/(double(nprocx*nprocy*nprocz)*double(nx-2)*double(ny-2)*double(nz-2));
|
||||
if (rank==0) printf("Media Porosity: %f \n",porosity);
|
||||
|
||||
|
||||
double radius,Rcrit_new;
|
||||
radius = 0.0;
|
||||
// Layer the inlet with NWP
|
||||
if (kproc == 0){
|
||||
for(j=0; j<Ny; j++){
|
||||
for(i=0; i<Nx; i++){
|
||||
n = j*nx+i;
|
||||
// n = nx*ny + j*nx+i;
|
||||
id[n]=1;
|
||||
if (SignDist(i,j,0) > radius){
|
||||
radius=SignDist(i,j,0);
|
||||
}
|
||||
// Initialize the signed distance function
|
||||
for (int k=0;k<nz;k++){
|
||||
for (int j=0;j<ny;j++){
|
||||
for (int i=0;i<nx;i++){
|
||||
int n = k*nx*ny+j*nx+i;
|
||||
// Initialize distance to +/- 1
|
||||
SignDist(i,j,k) = 2.0*double(id_solid(i,j,k))-1.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
MPI_Allreduce(&radius,&Rcrit_new,1,MPI_DOUBLE,MPI_MAX,comm);
|
||||
if (rank==0) printf("Initialized solid phase -- Converting to Signed Distance function \n");
|
||||
CalcDist(SignDist,id_solid,*Dm);
|
||||
|
||||
if (rank==0) printf("Starting morhpological drainage with critical radius = %f \n",Rcrit_new);
|
||||
MPI_Barrier(comm);
|
||||
|
||||
int imin,jmin,kmin,imax,jmax,kmax;
|
||||
|
||||
// Decrease the critical radius until the target saturation is met
|
||||
double deltaR=0.01; // amount to change the radius in voxel units
|
||||
double Rcrit_old;
|
||||
double sw_old=1.0; // initial WP saturation set to one
|
||||
double sw_new=1.0; // initial WP saturation set to one
|
||||
double sw_diff_old = 1.0;
|
||||
double sw_diff_new = 1.0;
|
||||
|
||||
while (sw_new > SW && Rcrit_new > 0.99){
|
||||
|
||||
Rcrit_old = Rcrit_new;
|
||||
Rcrit_new -= deltaR*Rcrit_old;// decrease critical radius
|
||||
sw_old = sw_new;
|
||||
sw_diff_old = sw_diff_new;
|
||||
|
||||
int Window=round(Rcrit_new);
|
||||
GlobalNumber = 1.0;
|
||||
|
||||
while (GlobalNumber > 0){
|
||||
|
||||
//if (rank==0) printf("GlobalNumber=%f \n",GlobalNumber);
|
||||
double LocalNumber=GlobalNumber=0.f;
|
||||
for(k=0; k<Nz; k++){
|
||||
for(j=0; j<Ny; j++){
|
||||
for(i=0; i<Nx; i++){
|
||||
n = k*nx*ny + j*nx+i;
|
||||
if (id[n] == 1 && SignDist(i,j,k) > Rcrit_new){
|
||||
// loop over the window and update
|
||||
imin=max(1,i-Window);
|
||||
jmin=max(1,j-Window);
|
||||
kmin=max(1,k-Window);
|
||||
imax=min(Nx-1,i+Window);
|
||||
jmax=min(Ny-1,j+Window);
|
||||
kmax=min(Nz-1,k+Window);
|
||||
for (kk=kmin; kk<kmax; kk++){
|
||||
for (jj=jmin; jj<jmax; jj++){
|
||||
for (ii=imin; ii<imax; ii++){
|
||||
int nn = kk*nx*ny+jj*nx+ii;
|
||||
double dsq = double((ii-i)*(ii-i)+(jj-j)*(jj-j)+(kk-k)*(kk-k));
|
||||
if (id[nn] == 2 && dsq <= Rcrit_new*Rcrit_new){
|
||||
LocalNumber+=1.0;
|
||||
id[nn]=1;
|
||||
}
|
||||
}
|
||||
// Run the morphological opening
|
||||
MorphDrain(SignDist, id, Dm, SW);
|
||||
|
||||
// calculate distance to non-wetting fluid
|
||||
if (domain_db->keyExists( "HistoryLabels" )){
|
||||
if (rank==0) printf("Relabel solid components that touch fluid 1 \n");
|
||||
auto LabelList = domain_db->getVector<char>( "ComponentLabels" );
|
||||
auto HistoryLabels = domain_db->getVector<char>( "HistoryLabels" );
|
||||
size_t NLABELS=LabelList.size();
|
||||
if (rank==0){
|
||||
for (unsigned int idx=0; idx < NLABELS; idx++){
|
||||
char VALUE = LabelList[idx];
|
||||
char NEWVAL = HistoryLabels[idx];
|
||||
printf(" Relabel component %d as %d \n", VALUE, NEWVAL);
|
||||
}
|
||||
}
|
||||
for (int k=0;k<nz;k++){
|
||||
for (int j=0;j<ny;j++){
|
||||
for (int i=0;i<nx;i++){
|
||||
int n = k*nx*ny+j*nx+i;
|
||||
// Initialize the solid phase
|
||||
if (id[n] == 1) id_solid(i,j,k) = 0;
|
||||
else id_solid(i,j,k) = 1;
|
||||
}
|
||||
}
|
||||
}
|
||||
// Initialize the signed distance function
|
||||
for (int k=0;k<nz;k++){
|
||||
for (int j=0;j<ny;j++){
|
||||
for (int i=0;i<nx;i++){
|
||||
int n = k*nx*ny+j*nx+i;
|
||||
// Initialize distance to +/- 1
|
||||
SignDist(i,j,k) = 2.0*double(id_solid(i,j,k))-1.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
CalcDist(SignDist,id_solid,*Dm);
|
||||
// re-label IDs near the non-wetting fluid
|
||||
for (int k=0;k<nz;k++){
|
||||
for (int j=0;j<ny;j++){
|
||||
for (int i=0;i<nx;i++){
|
||||
int n = k*nx*ny+j*nx+i;
|
||||
signed char LOCVAL = id[n];
|
||||
for (unsigned int idx=0; idx < NLABELS; idx++){
|
||||
char VALUE=LabelList[idx];
|
||||
char NEWVALUE=HistoryLabels[idx];
|
||||
if (LOCVAL == VALUE){
|
||||
idx = NLABELS;
|
||||
if (SignDist(i,j,k) < 1.0){
|
||||
id[n] = NEWVALUE;
|
||||
}
|
||||
}
|
||||
}
|
||||
// move on
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
// Pack and send the updated ID values
|
||||
PackID(Dm.sendList_x, Dm.sendCount_x ,sendID_x, id);
|
||||
PackID(Dm.sendList_X, Dm.sendCount_X ,sendID_X, id);
|
||||
PackID(Dm.sendList_y, Dm.sendCount_y ,sendID_y, id);
|
||||
PackID(Dm.sendList_Y, Dm.sendCount_Y ,sendID_Y, id);
|
||||
PackID(Dm.sendList_z, Dm.sendCount_z ,sendID_z, id);
|
||||
PackID(Dm.sendList_Z, Dm.sendCount_Z ,sendID_Z, id);
|
||||
PackID(Dm.sendList_xy, Dm.sendCount_xy ,sendID_xy, id);
|
||||
PackID(Dm.sendList_Xy, Dm.sendCount_Xy ,sendID_Xy, id);
|
||||
PackID(Dm.sendList_xY, Dm.sendCount_xY ,sendID_xY, id);
|
||||
PackID(Dm.sendList_XY, Dm.sendCount_XY ,sendID_XY, id);
|
||||
PackID(Dm.sendList_xz, Dm.sendCount_xz ,sendID_xz, id);
|
||||
PackID(Dm.sendList_Xz, Dm.sendCount_Xz ,sendID_Xz, id);
|
||||
PackID(Dm.sendList_xZ, Dm.sendCount_xZ ,sendID_xZ, id);
|
||||
PackID(Dm.sendList_XZ, Dm.sendCount_XZ ,sendID_XZ, id);
|
||||
PackID(Dm.sendList_yz, Dm.sendCount_yz ,sendID_yz, id);
|
||||
PackID(Dm.sendList_Yz, Dm.sendCount_Yz ,sendID_Yz, id);
|
||||
PackID(Dm.sendList_yZ, Dm.sendCount_yZ ,sendID_yZ, id);
|
||||
PackID(Dm.sendList_YZ, Dm.sendCount_YZ ,sendID_YZ, id);
|
||||
//......................................................................................
|
||||
MPI_Sendrecv(sendID_x,Dm.sendCount_x,MPI_CHAR,Dm.rank_x(),sendtag,
|
||||
recvID_X,Dm.recvCount_X,MPI_CHAR,Dm.rank_X(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_X,Dm.sendCount_X,MPI_CHAR,Dm.rank_X(),sendtag,
|
||||
recvID_x,Dm.recvCount_x,MPI_CHAR,Dm.rank_x(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_y,Dm.sendCount_y,MPI_CHAR,Dm.rank_y(),sendtag,
|
||||
recvID_Y,Dm.recvCount_Y,MPI_CHAR,Dm.rank_Y(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_Y,Dm.sendCount_Y,MPI_CHAR,Dm.rank_Y(),sendtag,
|
||||
recvID_y,Dm.recvCount_y,MPI_CHAR,Dm.rank_y(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_z,Dm.sendCount_z,MPI_CHAR,Dm.rank_z(),sendtag,
|
||||
recvID_Z,Dm.recvCount_Z,MPI_CHAR,Dm.rank_Z(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_Z,Dm.sendCount_Z,MPI_CHAR,Dm.rank_Z(),sendtag,
|
||||
recvID_z,Dm.recvCount_z,MPI_CHAR,Dm.rank_z(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_xy,Dm.sendCount_xy,MPI_CHAR,Dm.rank_xy(),sendtag,
|
||||
recvID_XY,Dm.recvCount_XY,MPI_CHAR,Dm.rank_XY(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_XY,Dm.sendCount_XY,MPI_CHAR,Dm.rank_XY(),sendtag,
|
||||
recvID_xy,Dm.recvCount_xy,MPI_CHAR,Dm.rank_xy(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_Xy,Dm.sendCount_Xy,MPI_CHAR,Dm.rank_Xy(),sendtag,
|
||||
recvID_xY,Dm.recvCount_xY,MPI_CHAR,Dm.rank_xY(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_xY,Dm.sendCount_xY,MPI_CHAR,Dm.rank_xY(),sendtag,
|
||||
recvID_Xy,Dm.recvCount_Xy,MPI_CHAR,Dm.rank_Xy(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_xz,Dm.sendCount_xz,MPI_CHAR,Dm.rank_xz(),sendtag,
|
||||
recvID_XZ,Dm.recvCount_XZ,MPI_CHAR,Dm.rank_XZ(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_XZ,Dm.sendCount_XZ,MPI_CHAR,Dm.rank_XZ(),sendtag,
|
||||
recvID_xz,Dm.recvCount_xz,MPI_CHAR,Dm.rank_xz(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_Xz,Dm.sendCount_Xz,MPI_CHAR,Dm.rank_Xz(),sendtag,
|
||||
recvID_xZ,Dm.recvCount_xZ,MPI_CHAR,Dm.rank_xZ(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_xZ,Dm.sendCount_xZ,MPI_CHAR,Dm.rank_xZ(),sendtag,
|
||||
recvID_Xz,Dm.recvCount_Xz,MPI_CHAR,Dm.rank_Xz(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_yz,Dm.sendCount_yz,MPI_CHAR,Dm.rank_yz(),sendtag,
|
||||
recvID_YZ,Dm.recvCount_YZ,MPI_CHAR,Dm.rank_YZ(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_YZ,Dm.sendCount_YZ,MPI_CHAR,Dm.rank_YZ(),sendtag,
|
||||
recvID_yz,Dm.recvCount_yz,MPI_CHAR,Dm.rank_yz(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_Yz,Dm.sendCount_Yz,MPI_CHAR,Dm.rank_Yz(),sendtag,
|
||||
recvID_yZ,Dm.recvCount_yZ,MPI_CHAR,Dm.rank_yZ(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
MPI_Sendrecv(sendID_yZ,Dm.sendCount_yZ,MPI_CHAR,Dm.rank_yZ(),sendtag,
|
||||
recvID_Yz,Dm.recvCount_Yz,MPI_CHAR,Dm.rank_Yz(),recvtag,comm,MPI_STATUS_IGNORE);
|
||||
|
||||
UnpackID(Dm.recvList_x, Dm.recvCount_x ,recvID_x, id);
|
||||
UnpackID(Dm.recvList_X, Dm.recvCount_X ,recvID_X, id);
|
||||
UnpackID(Dm.recvList_y, Dm.recvCount_y ,recvID_y, id);
|
||||
UnpackID(Dm.recvList_Y, Dm.recvCount_Y ,recvID_Y, id);
|
||||
UnpackID(Dm.recvList_z, Dm.recvCount_z ,recvID_z, id);
|
||||
UnpackID(Dm.recvList_Z, Dm.recvCount_Z ,recvID_Z, id);
|
||||
UnpackID(Dm.recvList_xy, Dm.recvCount_xy ,recvID_xy, id);
|
||||
UnpackID(Dm.recvList_Xy, Dm.recvCount_Xy ,recvID_Xy, id);
|
||||
UnpackID(Dm.recvList_xY, Dm.recvCount_xY ,recvID_xY, id);
|
||||
UnpackID(Dm.recvList_XY, Dm.recvCount_XY ,recvID_XY, id);
|
||||
UnpackID(Dm.recvList_xz, Dm.recvCount_xz ,recvID_xz, id);
|
||||
UnpackID(Dm.recvList_Xz, Dm.recvCount_Xz ,recvID_Xz, id);
|
||||
UnpackID(Dm.recvList_xZ, Dm.recvCount_xZ ,recvID_xZ, id);
|
||||
UnpackID(Dm.recvList_XZ, Dm.recvCount_XZ ,recvID_XZ, id);
|
||||
UnpackID(Dm.recvList_yz, Dm.recvCount_yz ,recvID_yz, id);
|
||||
UnpackID(Dm.recvList_Yz, Dm.recvCount_Yz ,recvID_Yz, id);
|
||||
UnpackID(Dm.recvList_yZ, Dm.recvCount_yZ ,recvID_yZ, id);
|
||||
UnpackID(Dm.recvList_YZ, Dm.recvCount_YZ ,recvID_YZ, id);
|
||||
//......................................................................................
|
||||
|
||||
MPI_Allreduce(&LocalNumber,&GlobalNumber,1,MPI_DOUBLE,MPI_SUM,comm);
|
||||
|
||||
// Layer the inlet with NWP
|
||||
if (kproc == 0){
|
||||
for(j=0; j<Ny; j++){
|
||||
for(i=0; i<Nx; i++){
|
||||
n = j*nx+i;
|
||||
// n = nx*ny + j*nx+i;
|
||||
id[n]=1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Layer the outlet with WP
|
||||
if (kproc == nprocz-1){
|
||||
for(j=0; j<Ny; j++){
|
||||
for(i=0; i<Nx; i++){
|
||||
n = (nz-1)*nx*ny+j*nx+i;
|
||||
// n = nx*ny + j*nx+i;
|
||||
id[n]=2;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
count = 1.f;
|
||||
for (int k=1; k<Nz-1; k++){
|
||||
for (int j=1; j<Ny-1; j++){
|
||||
for (int i=1; i<Nx-1; i++){
|
||||
n=k*Nx*Ny+j*Nx+i;
|
||||
if (id[n] == 2){
|
||||
count+=1.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
MPI_Allreduce(&count,&countGlobal,1,MPI_DOUBLE,MPI_SUM,comm);
|
||||
sw_new= countGlobal/totalGlobal;
|
||||
sw_diff_new = abs(sw_new-SW);
|
||||
// if (rank==0){
|
||||
// printf("Final saturation=%f\n",sw_new);
|
||||
// printf("Final critical radius=%f\n",Rcrit_new);
|
||||
//
|
||||
// }
|
||||
|
||||
if (rank==0) printf("Writing ID file \n");
|
||||
sprintf(LocalRankFilename,"ID.%05i",rank);
|
||||
|
||||
FILE *ID = fopen(LocalRankFilename,"wb");
|
||||
fwrite(id,1,N,ID);
|
||||
fclose(ID);
|
||||
}
|
||||
|
||||
if (sw_diff_new<sw_diff_old){
|
||||
if (rank==0){
|
||||
printf("Final saturation=%f\n",sw_new);
|
||||
printf("Final critical radius=%f\n",Rcrit_new);
|
||||
|
||||
}
|
||||
}
|
||||
else{
|
||||
if (rank==0){
|
||||
printf("Final saturation=%f\n",sw_old);
|
||||
printf("Final critical radius=%f\n",Rcrit_old);
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
sprintf(LocalRankFilename,"ID.%05i",rank);
|
||||
FILE *ID = fopen(LocalRankFilename,"wb");
|
||||
fwrite(id,1,N,ID);
|
||||
fclose(ID);
|
||||
|
||||
MPI_Barrier(comm);
|
||||
MPI_Finalize();
|
||||
}
|
||||
|
||||
Loading…
Reference in New Issue
Block a user