:Merge branch 'master' of github.com:OPM/LBPM
This commit is contained in:
James McClure
commit
b29715edcf
147
.github/workflows/c-cpp.yml
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147
.github/workflows/c-cpp.yml
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name: LBPM CI
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on:
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push:
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branches: [ master ]
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pull_request:
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branches: [ master ]
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jobs:
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build-and-test:
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runs-on: ubuntu-latest
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env:
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LBPM_ZLIB_DIR: /home/runner/extlib/zlib
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LBPM_HDF5_DIR: /home/runner/extlib/hdf5
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LBPM_SILO_DIR: /home/runner/extlib/silo
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MPI_DIR: /home/runner/.openmpi
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steps:
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- name: download dependencies
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run: |
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echo $LBPM_ZLIB_DIR
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echo $LBPM_HDF5_DIR
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echo $LBPM_SILO_DIR
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echo $GITHUB_PATH
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echo $GITHUB_WORKSPACE
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sudo apt-get update -y
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#sudo apt-get install -y libtool-ltdl
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#sudo apt-get install -y libtool-ltdl-devel
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#curl "https://wci.llnl.gov/sites/wci/files/2021-01/silo-4.10.2.tgz" -o "silo-4.10.2.tar.gz"
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wget https://bitbucket.org/AdvancedMultiPhysics/tpl-builder/downloads/silo-4.10.2.tar.gz
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wget https://www.zlib.net/zlib-1.2.11.tar.gz
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wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.12/src/hdf5-1.8.12.tar.gz
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#wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.10/src/hdf5-1.8.10.tar.gz
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tar -xzvf zlib-1.2.11.tar.gz
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tar -xzvf hdf5-1.8.12.tar.gz
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tar -xzvf silo-4.10.2.tar.gz
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- name: check out commit
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uses: actions/checkout@v2
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with:
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path: LBPM
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- name: install-openmpi
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run: |
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wget https://download.open-mpi.org/release/open-mpi/v3.1/openmpi-3.1.2.tar.gz
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tar -xvf ./openmpi-3.1.2.tar.gz
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./openmpi-3.1.2/configure --prefix="$HOME/.openmpi"
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make -j
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sudo make install
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echo "$HOME/.openmpi/bin" >> $GITHUB_PATH
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- name: install zlib dependencies
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run: |
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cd zlib-1.2.11
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./configure --prefix=$LBPM_ZLIB_DIR
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make
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sudo make install
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cd ..
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- name: install hdf5 dependencies
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run: |
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cd hdf5-1.8.12
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CC=/home/runner/.openmpi/bin/mpicc CXX=/home/runner/.openmpi/bin/mpicxx CXXFLAGS="-fPIC -O3 -std=c++14" \
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./configure --prefix=$LBPM_HDF5_DIR --enable-parallel --enable-shared --with-zlib=$LBPM_ZLIB_DIR
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make
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sudo make install
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cd ..
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- name: install silo dependencies
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run: |
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cd silo-4.10.2
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CC=$MPI_DIR/bin/mpicc CXX=$MPI_DIR/bin/mpicxx CXXFLAGS="-fPIC -O3 -std=c++14" \
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./configure --prefix=$LBPM_SILO_DIR -with-hdf5="$LBPM_HDF5_DIR/include,$LBPM_HDF5_DIR/lib" --enable-static
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make
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sudo make install
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cd ..
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- name: configure cmake
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run: |
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mkdir build
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cd build
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rm -rf CMake*
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cmake \
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-D CMAKE_BUILD_TYPE:STRING=Release \
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-D CMAKE_C_COMPILER:PATH=$MPI_DIR/bin/mpicc \
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-D CMAKE_CXX_COMPILER:PATH=$MPI_DIR/bin/mpicxx \
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-D MPI_CXX_COMPILER=$MPI_DIR/bin/mpicxx \
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-D CMAKE_C_FLAGS="-fPIC" \
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-D CMAKE_CXX_FLAGS="-fPIC" \
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-D CMAKE_CXX_STD=14 \
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-D USE_TIMER=0 \
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-D TIMER_DIRECTORY=$LBPM_TIMER_DIR \
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-D USE_NETCDF=0 \
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-D NETCDF_DIRECTORY=$LBPM_NETCDF_DIR \
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-D USE_SILO=1 \
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-D HDF5_DIRECTORY=$LBPM_HDF5_DIR \
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-D SILO_DIRECTORY=$LBPM_SILO_DIR \
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-D USE_CUDA=0 \
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$GITHUB_WORKSPACE/LBPM
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#-DCMAKE_C_COMPILER:PATH=$MPI_DIR/bin/mpicc \
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#-DCMAKE_CXX_COMPILER:PATH=$MPI_DIR/bin/mpicxx \
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#-DCMAKE_C_FLAGS="-O3 -fPIC" \
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#-DCMAKE_CXX_FLAGS="-O3 -fPIC " \
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#-DCMAKE_CXX_STANDARD=14 \
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#-DMPIEXEC=$MPI_DIR/mpirun \
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#-DUSE_EXT_MPI_FOR_SERIAL_TESTS:BOOL=TRUE \
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#-DCMAKE_BUILD_TYPE:STRING=Release \
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#-DHDF5_DIRECTORY=$LBPM_HDF5_DIR \
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#-DHDF5_LIB=$LBPM_HDF5_DIR/lib/libhdf5.a \
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#-DUSE_SILO=1 \
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#-DSILO_LIB=$LBPM_SILO_DIR/lib/libsiloh5.a \
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#-DSILO_DIRECTORY=$LBPM_SILO_DIR \
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#-DUSE_NETCDF=0 \
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#-DUSE_CUDA=0 \
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#-DUSE_TIMER=0 \
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#$GITHUB_WORKSPACE/LBPM
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cd ..
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- name: build and make
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run: |
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cd build
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make
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sudo make install
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cd ..
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- name: tests
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run: |
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cd build
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ctest
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41
.github/workflows/test_install_openmpi.yml
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41
.github/workflows/test_install_openmpi.yml
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@ -0,0 +1,41 @@
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name: Install OpenMPI test
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on:
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push:
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branches: [ master ]
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pull_request:
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branches: [ master ]
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jobs:
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install-openmpi:
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runs-on: ubuntu-latest
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steps:
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- name: check path
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run: |
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echo $PATH
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echo $GITHUB_PATH
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cmake --version
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- name: download-openmpi
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run: wget https://download.open-mpi.org/release/open-mpi/v4.0/openmpi-4.0.2.tar.gz
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- name: extract-openmpi
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run: tar -xvf ./openmpi-4.0.2.tar.gz
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- name: configure-openmpi
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run: ./openmpi-4.0.2/configure --prefix="/home/${USER}/.openmpi"
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- name: install-openmpi
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run: |
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make -j
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sudo make install
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- name: setting path
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run: |
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echo "/home/${USER}/.openmpi/bin" >> $GITHUB_PATH
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#echo "/home/${USER}/.openmpi/bin" >> $PATH
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- name: checking version
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run: mpirun --version
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@ -274,7 +274,7 @@ std::vector<IO::MeshDatabase> writeMeshesHDF5( const std::vector<IO::MeshDataStr
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std::vector<IO::MeshDatabase> writeMeshesHDF5(
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const std::vector<IO::MeshDataStruct> &, const std::string &, IO::FileFormat, int );
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const std::vector<IO::MeshDataStruct> &, const std::string &, IO::FileFormat, int )
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{
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return std::vector<IO::MeshDatabase>();
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}
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