develop better interface...
This commit is contained in:
James McClure
@@ -1,6 +1,119 @@
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#include <analysis/morphology.h>
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// Implementation of morphological opening routine
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Morphology::Morphology(std::shared_ptr <Domain> Dm){
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int nx = Dm->Nx;
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int ny = Dm->Ny;
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int nz = Dm->Nz;
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int nprocx = Dm->nprocx();
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int nprocy = Dm->nprocy();
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int nprocz = Dm->nprocz();
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int rank = Dm->rank();
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// send buffers
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sendID_x = new signed char [Dm->sendCount("x")];
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sendID_y = new signed char [Dm->sendCount("y")];
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sendID_z = new signed char [Dm->sendCount("z")];
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sendID_X = new signed char [Dm->sendCount("X")];
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sendID_Y = new signed char [Dm->sendCount("Y")];
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sendID_Z = new signed char [Dm->sendCount("Z")];
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sendID_xy = new signed char [Dm->sendCount("xy")];
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sendID_yz = new signed char [Dm->sendCount("yz")];
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sendID_xz = new signed char [Dm->sendCount("xz")];
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sendID_Xy = new signed char [Dm->sendCount("Xy")];
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sendID_Yz = new signed char [Dm->sendCount("Yz")];
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sendID_xZ = new signed char [Dm->sendCount("xZ")];
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sendID_xY = new signed char [Dm->sendCount("xY")];
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sendID_yZ = new signed char [Dm->sendCount("yZ")];
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sendID_Xz = new signed char [Dm->sendCount("Xz")];
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sendID_XY = new signed char [Dm->sendCount("XY")];
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sendID_YZ = new signed char [Dm->sendCount("YZ")];
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sendID_XZ = new signed char [Dm->sendCount("XZ")];
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//......................................................................................
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// recv buffers
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recvID_x = new signed char [Dm->recvCount("x")];
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recvID_y = new signed char [Dm->recvCount("y")];
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recvID_z = new signed char [Dm->recvCount("z")];
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recvID_X = new signed char [Dm->recvCount("X")];
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recvID_Y = new signed char [Dm->recvCount("Y")];
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recvID_Z = new signed char [Dm->recvCount("Z")];
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recvID_xy = new signed char [Dm->recvCount("xy")];
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recvID_yz = new signed char [Dm->recvCount("yz")];
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recvID_xz = new signed char [Dm->recvCount("xz")];
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recvID_Xy = new signed char [Dm->recvCount("Xy")];
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recvID_xZ = new signed char [Dm->recvCount("xZ")];
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recvID_xY = new signed char [Dm->recvCount("xY")];
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recvID_yZ = new signed char [Dm->recvCount("yZ")];
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recvID_Yz = new signed char [Dm->recvCount("Yz")];
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recvID_Xz = new signed char [Dm->recvCount("Xz")];
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recvID_XY = new signed char [Dm->recvCount("XY")];
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recvID_YZ = new signed char [Dm->recvCount("YZ")];
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recvID_XZ = new signed char [Dm->recvCount("XZ")];
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}
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inline void Morphology::SendRecv(std::shared_ptr <Domain> Dm, char *id){
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// Pack and send the updated ID values
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PackID(Dm->sendList("x"), Dm->sendCount("x") ,sendID_x, id);
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PackID(Dm->sendList("X"), Dm->sendCount("X") ,sendID_X, id);
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PackID(Dm->sendList("y"), Dm->sendCount("y") ,sendID_y, id);
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PackID(Dm->sendList("Y"), Dm->sendCount("Y") ,sendID_Y, id);
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PackID(Dm->sendList("z"), Dm->sendCount("z") ,sendID_z, id);
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PackID(Dm->sendList("Z"), Dm->sendCount("Z") ,sendID_Z, id);
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PackID(Dm->sendList("xy"), Dm->sendCount("xy") ,sendID_xy, id);
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PackID(Dm->sendList("Xy"), Dm->sendCount("Xy") ,sendID_Xy, id);
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PackID(Dm->sendList("xY"), Dm->sendCount("xY") ,sendID_xY, id);
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PackID(Dm->sendList("XY"), Dm->sendCount("XY") ,sendID_XY, id);
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PackID(Dm->sendList("xz"), Dm->sendCount("xz") ,sendID_xz, id);
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PackID(Dm->sendList("Xz"), Dm->sendCount("Xz") ,sendID_Xz, id);
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PackID(Dm->sendList("xZ"), Dm->sendCount("xZ") ,sendID_xZ, id);
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PackID(Dm->sendList("XZ"), Dm->sendCount("XZ") ,sendID_XZ, id);
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PackID(Dm->sendList("yz"), Dm->sendCount("yz") ,sendID_yz, id);
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PackID(Dm->sendList("Yz"), Dm->sendCount("Yz") ,sendID_Yz, id);
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PackID(Dm->sendList("yZ"), Dm->sendCount("yZ") ,sendID_yZ, id);
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PackID(Dm->sendList("YZ"), Dm->sendCount("YZ") ,sendID_YZ, id);
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//......................................................................................
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Dm->Comm.sendrecv(sendID_x,Dm->sendCount("x"),Dm->rank_x(),sendtag,recvID_X,Dm->recvCount("X"),Dm->rank_X(),recvtag);
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Dm->Comm.sendrecv(sendID_X,Dm->sendCount("X"),Dm->rank_X(),sendtag,recvID_x,Dm->recvCount("x"),Dm->rank_x(),recvtag);
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Dm->Comm.sendrecv(sendID_y,Dm->sendCount("y"),Dm->rank_y(),sendtag,recvID_Y,Dm->recvCount("Y"),Dm->rank_Y(),recvtag);
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Dm->Comm.sendrecv(sendID_Y,Dm->sendCount("Y"),Dm->rank_Y(),sendtag,recvID_y,Dm->recvCount("y"),Dm->rank_y(),recvtag);
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Dm->Comm.sendrecv(sendID_z,Dm->sendCount("z"),Dm->rank_z(),sendtag,recvID_Z,Dm->recvCount("Z"),Dm->rank_Z(),recvtag);
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Dm->Comm.sendrecv(sendID_Z,Dm->sendCount("Z"),Dm->rank_Z(),sendtag,recvID_z,Dm->recvCount("z"),Dm->rank_z(),recvtag);
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Dm->Comm.sendrecv(sendID_xy,Dm->sendCount("xy"),Dm->rank_xy(),sendtag,recvID_XY,Dm->recvCount("XY"),Dm->rank_XY(),recvtag);
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Dm->Comm.sendrecv(sendID_XY,Dm->sendCount("XY"),Dm->rank_XY(),sendtag,recvID_xy,Dm->recvCount("xy"),Dm->rank_xy(),recvtag);
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Dm->Comm.sendrecv(sendID_Xy,Dm->sendCount("Xy"),Dm->rank_Xy(),sendtag,recvID_xY,Dm->recvCount("xY"),Dm->rank_xY(),recvtag);
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Dm->Comm.sendrecv(sendID_xY,Dm->sendCount("xY"),Dm->rank_xY(),sendtag,recvID_Xy,Dm->recvCount("Xy"),Dm->rank_Xy(),recvtag);
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Dm->Comm.sendrecv(sendID_xz,Dm->sendCount("xz"),Dm->rank_xz(),sendtag,recvID_XZ,Dm->recvCount("XZ"),Dm->rank_XZ(),recvtag);
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Dm->Comm.sendrecv(sendID_XZ,Dm->sendCount("XZ"),Dm->rank_XZ(),sendtag,recvID_xz,Dm->recvCount("xz"),Dm->rank_xz(),recvtag);
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Dm->Comm.sendrecv(sendID_Xz,Dm->sendCount("Xz"),Dm->rank_Xz(),sendtag,recvID_xZ,Dm->recvCount("xZ"),Dm->rank_xZ(),recvtag);
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Dm->Comm.sendrecv(sendID_xZ,Dm->sendCount("xZ"),Dm->rank_xZ(),sendtag,recvID_Xz,Dm->recvCount("Xz"),Dm->rank_Xz(),recvtag);
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Dm->Comm.sendrecv(sendID_yz,Dm->sendCount("yz"),Dm->rank_yz(),sendtag,recvID_YZ,Dm->recvCount("YZ"),Dm->rank_YZ(),recvtag);
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Dm->Comm.sendrecv(sendID_YZ,Dm->sendCount("YZ"),Dm->rank_YZ(),sendtag,recvID_yz,Dm->recvCount("yz"),Dm->rank_yz(),recvtag);
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Dm->Comm.sendrecv(sendID_Yz,Dm->sendCount("Yz"),Dm->rank_Yz(),sendtag,recvID_yZ,Dm->recvCount("yZ"),Dm->rank_yZ(),recvtag);
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Dm->Comm.sendrecv(sendID_yZ,Dm->sendCount("yZ"),Dm->rank_yZ(),sendtag,recvID_Yz,Dm->recvCount("Yz"),Dm->rank_Yz(),recvtag);
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//......................................................................................
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UnpackID(Dm->recvList("x"), Dm->recvCount("x") ,recvID_x, id);
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UnpackID(Dm->recvList("X"), Dm->recvCount("X") ,recvID_X, id);
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UnpackID(Dm->recvList("y"), Dm->recvCount("y") ,recvID_y, id);
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UnpackID(Dm->recvList("Y"), Dm->recvCount("Y") ,recvID_Y, id);
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UnpackID(Dm->recvList("z"), Dm->recvCount("z") ,recvID_z, id);
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UnpackID(Dm->recvList("Z"), Dm->recvCount("Z") ,recvID_Z, id);
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UnpackID(Dm->recvList("xy"), Dm->recvCount("xy") ,recvID_xy, id);
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UnpackID(Dm->recvList("Xy"), Dm->recvCount("Xy") ,recvID_Xy, id);
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UnpackID(Dm->recvList("xY"), Dm->recvCount("xY") ,recvID_xY, id);
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UnpackID(Dm->recvList("XY"), Dm->recvCount("XY") ,recvID_XY, id);
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UnpackID(Dm->recvList("xz"), Dm->recvCount("xz") ,recvID_xz, id);
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UnpackID(Dm->recvList("Xz"), Dm->recvCount("Xz") ,recvID_Xz, id);
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UnpackID(Dm->recvList("xZ"), Dm->recvCount("xZ") ,recvID_xZ, id);
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UnpackID(Dm->recvList("XZ"), Dm->recvCount("XZ") ,recvID_XZ, id);
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UnpackID(Dm->recvList("yz"), Dm->recvCount("yz") ,recvID_yz, id);
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UnpackID(Dm->recvList("Yz"), Dm->recvCount("Yz") ,recvID_Yz, id);
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UnpackID(Dm->recvList("yZ"), Dm->recvCount("yZ") ,recvID_yZ, id);
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UnpackID(Dm->recvList("YZ"), Dm->recvCount("YZ") ,recvID_YZ, id);
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//......................................................................................
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}
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inline void PackID(const int *list, int count, signed char *sendbuf, signed char *ID){
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// Fill in the phase ID values from neighboring processors
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// This packs up the values that need to be sent from one processor to another
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