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Update helper functions to read input database

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This commit is contained in:
James McClure 2020-03-04 14:50:53 -05:00
parent 7569c9bf73
commit fa61d19095
1 changed files with 25 additions and 0 deletions
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25
example/Workflow/HelperFunctions.R
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@ -2,6 +2,31 @@ require("ggplot2")
GG_THEME=theme_bw()+theme(panel.grid.major = element_blank(),panel.grid.minor = element_blank()) GG_THEME=theme_bw()+theme(panel.grid.major = element_blank(),panel.grid.minor = element_blank())
ReadDatabase<-function(FILE){
INPUT<-gsub(';','',readLines(FILE))
S<-gsub('tauA = ','',gsub("\\s+"," ",(grep("tauA",INPUT,value=TRUE))))
TAU_A = as.numeric(S)
S<-gsub('tauB = ','',gsub("\\s+"," ",(grep("tauB",INPUT,value=TRUE))))
TAU_B = as.numeric(S)
S<-gsub('rhoA = ','',gsub("\\s+"," ",(grep("rhoA",INPUT,value=TRUE))))
RHO_A = as.numeric(S)
S<-gsub('rhoB = ','',gsub("\\s+"," ",(grep("rhoB",INPUT,value=TRUE))))
RHO_B = as.numeric(S)
S<-gsub('alpha = ','',gsub("\\s+"," ",(grep("alpha",INPUT,value=TRUE))))
ALPHA = as.numeric(S)
# Read the affinity
S<-gsub('ComponentAffinity = ','',gsub("\\s+"," ",(grep("ComponentAffinity",INPUT,value=TRUE))))
AFFINITY<-as.numeric(unlist(strsplit(S,", ")))
PARAMETERS<-c(TAU_A,TAU_B,RHO_A,RHO_B,ALPHA,AFFINITY)
return(PARAMETERS)
}
ReadSubphase<-function(PATH){ ReadSubphase<-function(PATH){
FILE=paste0(PATH,"/subphase.csv") FILE=paste0(PATH,"/subphase.csv")
S<-read.csv(FILE,head=TRUE,sep=" ") S<-read.csv(FILE,head=TRUE,sep=" ")