James E McClure
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b6227dd823
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multiple nvidia gpu working with membrane
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2022-05-12 20:50:05 -04:00 |
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James McClure
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cf3bc417ce
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Merge branch 'test_poisson' of github.com:JamesEMcClure/LBPM-WIA into test_poisson
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2022-05-12 07:09:39 -04:00 |
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James McClure
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ffe4bdd917
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update hip
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2022-05-12 06:58:10 -04:00 |
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James McClure
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0e769186a5
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update gpu routines first try
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2022-05-12 06:54:55 -04:00 |
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Zhe Rex Li
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cb995c7d00
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add sample files for plane membrane
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2022-05-12 15:39:50 +10:00 |
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James McClure
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ad8c5f6e26
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communication seems to work
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2022-05-12 00:52:34 -04:00 |
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James McClure
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29e4c76561
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membrane test works with new comm
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2022-05-12 00:31:22 -04:00 |
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James McClure
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7c790e8802
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updating membrane communication structure
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2022-05-11 23:37:18 -04:00 |
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James McClure
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2894b740d0
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add functions to copy send / recv list from ScaLBL
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2022-05-11 17:12:23 -04:00 |
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James McClure
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4661cbdce4
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debug gpu
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2022-05-11 14:05:16 -04:00 |
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James McClure
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50c7429995
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debug gpu launch issue for ion
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2022-05-11 10:32:53 -04:00 |
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James McClure
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e677b0395f
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add barrier to membrane transport
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2022-05-09 06:32:58 -04:00 |
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James McClure
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9e74f49812
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add new ion code for cuda
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2022-05-08 05:49:23 -04:00 |
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James McClure
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cf2b69e7ee
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fix missing bracket
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2022-05-07 19:36:14 -04:00 |
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James McClure
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6f7740fc3e
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Merge branch 'tmp' into test_poisson
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2022-05-07 19:32:54 -04:00 |
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James McClure
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9037f51c22
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add hip for ion update
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2022-05-07 19:32:51 -04:00 |
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James McClure
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459d6064c1
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merge to membrane
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2022-05-06 20:41:03 -04:00 |
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James McClure
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9f76e7b1e8
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update to cell vis routine
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2022-05-06 19:03:19 -04:00 |
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James McClure
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c424e1d984
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cleanup with help from valgrind
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2022-05-06 16:21:37 -04:00 |
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Zhe Li
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ba6d438630
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this makes mpi hang error explicit;to be debugged
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2022-05-04 14:34:31 +10:00 |
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Zhe Rex Li
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01ffcce379
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update print-out
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2022-05-03 17:10:26 +10:00 |
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Zhe Rex Li
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de52cf53b9
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add more tweaks for cell simulator
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2022-05-03 16:32:42 +10:00 |
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Zhe Li
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9c2c216af8
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udpate output precision
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2022-05-03 15:55:40 +10:00 |
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Zhe Rex Li
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6959a02f7b
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correct ion LB collison
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2022-05-03 15:00:00 +10:00 |
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Zhe Rex Li
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47db000ba6
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correct D3Q7 Poisson LB algorithm
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2022-04-29 20:36:38 +10:00 |
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Zhe Li
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025987e53b
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make further corrections
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2022-04-28 23:59:13 +10:00 |
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Zhe Li
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bdd0efd36e
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build passed
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2022-04-28 16:55:58 +10:00 |
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Zhe Rex Li
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a00a3606f7
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add functionality for user to choose either D3Q7 or D3Q19 lattice for Poisson;to be built and tested
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2022-04-28 16:21:04 +10:00 |
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Zhe Li
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678925ec15
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correct use_membrane functionality
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2022-04-28 15:22:23 +10:00 |
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Zhe Li
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754b1ad9d9
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update executable list and NP_cell simulator
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2022-04-27 14:04:11 +10:00 |
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Zhe Rex Li
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86be316977
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merge membrane into test_poisson
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2022-04-27 12:04:53 +10:00 |
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James McClure
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8ea560ca66
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update cell db
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2022-04-26 19:01:30 -04:00 |
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James McClure
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e3518e3482
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added membrane properties to input db
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2022-04-26 18:07:26 -04:00 |
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James McClure
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3e82370d6c
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update cpu ion valence
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2022-04-26 06:37:08 -04:00 |
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Zhe Rex Li
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614b002725
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remove Stokes solver from cell simulator; need to test build
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2022-04-26 11:41:14 +10:00 |
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Zhe Rex Li
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17f80b4637
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merge the latest membrane into test_poisson
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2022-04-26 11:16:44 +10:00 |
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James E McClure
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429413ce3b
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fix charge density (i think)
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2022-04-24 16:48:12 -04:00 |
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James E McClure
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3642a6ae9b
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debug charge density problems on crusher
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2022-04-24 15:55:23 -04:00 |
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James E McClure
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9043751281
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debug crusher
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2022-04-24 14:55:59 -04:00 |
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James E McClure
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eadb420d06
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update hip
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2022-04-24 14:54:49 -04:00 |
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James E McClure
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91d8fbe751
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Merge branch 'membrane' of github.com:JamesEMcClure/LBPM-WIA into membrane
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2022-04-24 11:04:47 -04:00 |
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James McClure
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418bc82953
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fix poisson typo
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2022-04-24 11:04:33 -04:00 |
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James E McClure
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36a5204882
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a bunch of summit debug things to roll back later
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2022-04-24 11:04:11 -04:00 |
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James McClure
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dd5dbbd51c
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deprecate old error methods
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2022-04-24 11:00:17 -04:00 |
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James McClure
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d964eee29c
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update hip poisson solver
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2022-04-24 11:00:03 -04:00 |
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James E McClure
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0224ecdcff
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fix typo
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2022-04-22 20:41:49 -04:00 |
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James McClure
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cf4f2b63da
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update error analysis for Poisson solver
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2022-04-22 15:17:52 -04:00 |
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James McClure
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d3dc35c018
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fix bad ref to D3Q7
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2022-04-22 14:30:03 -04:00 |
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James McClure
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481a258fbd
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read Membrane ion concentration list
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2022-04-19 10:53:16 -04:00 |
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James McClure
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b51968c677
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print membrane input concentration
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2022-04-19 07:46:53 -04:00 |
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