Zhe Rex Li
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de52cf53b9
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add more tweaks for cell simulator
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2022-05-03 16:32:42 +10:00 |
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Zhe Rex Li
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6959a02f7b
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correct ion LB collison
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2022-05-03 15:00:00 +10:00 |
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Zhe Li
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bdd0efd36e
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build passed
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2022-04-28 16:55:58 +10:00 |
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Zhe Rex Li
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a00a3606f7
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add functionality for user to choose either D3Q7 or D3Q19 lattice for Poisson;to be built and tested
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2022-04-28 16:21:04 +10:00 |
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Zhe Li
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678925ec15
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correct use_membrane functionality
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2022-04-28 15:22:23 +10:00 |
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Zhe Rex Li
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86be316977
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merge membrane into test_poisson
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2022-04-27 12:04:53 +10:00 |
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James McClure
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e3518e3482
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added membrane properties to input db
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2022-04-26 18:07:26 -04:00 |
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Zhe Rex Li
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17f80b4637
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merge the latest membrane into test_poisson
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2022-04-26 11:16:44 +10:00 |
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James E McClure
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429413ce3b
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fix charge density (i think)
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2022-04-24 16:48:12 -04:00 |
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James E McClure
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3642a6ae9b
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debug charge density problems on crusher
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2022-04-24 15:55:23 -04:00 |
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James E McClure
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9043751281
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debug crusher
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2022-04-24 14:55:59 -04:00 |
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James E McClure
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91d8fbe751
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Merge branch 'membrane' of github.com:JamesEMcClure/LBPM-WIA into membrane
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2022-04-24 11:04:47 -04:00 |
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James McClure
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418bc82953
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fix poisson typo
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2022-04-24 11:04:33 -04:00 |
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James E McClure
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36a5204882
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a bunch of summit debug things to roll back later
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2022-04-24 11:04:11 -04:00 |
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James McClure
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dd5dbbd51c
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deprecate old error methods
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2022-04-24 11:00:17 -04:00 |
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James McClure
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cf4f2b63da
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update error analysis for Poisson solver
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2022-04-22 15:17:52 -04:00 |
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James McClure
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d3dc35c018
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fix bad ref to D3Q7
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2022-04-22 14:30:03 -04:00 |
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James McClure
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481a258fbd
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read Membrane ion concentration list
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2022-04-19 10:53:16 -04:00 |
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James McClure
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b51968c677
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print membrane input concentration
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2022-04-19 07:46:53 -04:00 |
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James McClure
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7eaaced8d9
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add barriers to poisson solver
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2022-04-18 08:45:49 -04:00 |
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James McClure
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85e99df3f3
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add membrane concentration init
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2022-04-14 22:57:23 -04:00 |
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James McClure
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aa8783141d
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small change
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2022-04-13 20:39:59 -04:00 |
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Zhe Li
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e7c227bd9f
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fix bugs in initializing electric potential; the Psi on solid was accidentally overwritten before.
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2022-04-13 16:56:26 +10:00 |
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Zhe Li
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c281c0cfda
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fix dumb bugs
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2022-04-13 14:53:23 +10:00 |
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Zhe Rex Li
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0f68c118de
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Poisson solver; enable specifying initial values
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2022-04-12 16:12:12 +10:00 |
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Zhe Li
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cc693c93f5
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fix a few syntax bugs and build passed
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2022-04-12 12:49:28 +10:00 |
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Zhe Rex Li
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e1ebbce812
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initialize nernst-planck simulator; to be built subject to debugging
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2022-04-12 11:40:39 +10:00 |
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James McClure
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d0e41bf834
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d319 poisson works good
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2022-04-10 17:25:29 -04:00 |
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James McClure
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eb1c5da99c
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still broken wang
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2022-04-10 16:08:35 -04:00 |
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James McClure
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cd970d64a3
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Merge branch 'membrane-rex-d3q19' into membrane-wang
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2022-04-10 12:34:31 -04:00 |
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James McClure
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b182d04833
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tau from wang paper
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2022-04-10 11:32:53 -04:00 |
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James McClure
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b3dfc014d8
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rex d3q19 (broken)
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2022-04-10 11:05:53 -04:00 |
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James McClure
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9c63613373
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original wang poisson solver (broken)
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2022-04-10 09:51:02 -04:00 |
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James McClure
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2bb2be845a
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membrane starts working ok...
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2022-04-08 16:44:37 -04:00 |
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James McClure
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3715ed98b0
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Merge branch 'membrane' of github.com:JamesEMcClure/LBPM-WIA into membrane
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2022-04-01 06:58:49 -04:00 |
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James McClure
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39a04e38ab
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getting ready to merge gpu
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2022-04-01 06:58:43 -04:00 |
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James E McClure
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f99af45c9b
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Merge branch 'membrane' into tmp
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2022-03-27 16:03:26 -04:00 |
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James E McClure
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6911e97c29
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merge master with crusher
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2022-03-27 16:02:56 -04:00 |
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James McClure
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8a0937e111
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add sigmoid to ion equilibrium dist
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2022-03-24 07:38:06 -04:00 |
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James McClure
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4927e54707
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add single cell example
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2022-03-20 15:13:53 -04:00 |
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James McClure
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3522d35de1
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read input files
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2022-03-20 13:32:24 -04:00 |
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James McClure
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51c88f0055
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cell simulator runs
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2022-03-20 11:22:46 -04:00 |
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James McClure
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702eaae1c1
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try at membrane simulator
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2022-03-18 18:08:44 -04:00 |
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James McClure
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bfe1de6be2
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membrane structure in IonModel
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2022-03-18 11:20:09 -04:00 |
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James McClure
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e8d0b0b48a
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adding membrane functions
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2022-03-18 11:06:16 -04:00 |
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James McClure
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1abb9adea6
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clean up relabel
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2022-03-18 11:05:50 -04:00 |
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zherexli
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0105155d2f
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update comments in ion model
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2022-03-17 11:35:48 +11:00 |
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James E McClure
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6b0b8daddd
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hang fix / workaround
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2022-02-10 13:43:31 -05:00 |
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James E McClure
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1f6d37208e
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fix whitespace merge issue
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2022-02-03 09:15:28 -05:00 |
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James E McClure
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3adbd04d38
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update color
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2022-02-03 09:14:33 -05:00 |
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