//*************************************************************************
// Lattice Boltzmann Simulator for Single Phase Flow in Porous Media
// James E. McCLure
//*************************************************************************
#include <stdio.h>
#include <iostream>
#include <fstream>
#include "common/ScaLBL.h"
#include "common/MPI_Helpers.h"

using namespace std;

//***************************************************************************************
int main(int argc, char **argv)
{
	//*****************************************
	// ***** MPI STUFF ****************
	//*****************************************
	// Initialize MPI
	int rank,nprocs;
	MPI_Init(&argc,&argv);
	MPI_Comm comm = MPI_COMM_WORLD;
	MPI_Comm_rank(comm,&rank);
	MPI_Comm_size(comm,&nprocs);
	int check;
	{
		// parallel domain size (# of sub-domains)
		int nprocx,nprocy,nprocz;
		int iproc,jproc,kproc;


		if (rank == 0){
			printf("********************************************************\n");
			printf("Running Unit Test: TestPressVel	\n");
			printf("********************************************************\n");
		}

		// BGK Model parameters
		string FILENAME;
		unsigned int nBlocks, nthreads;
		int timestepMax, interval;
		double tau,Fx,Fy,Fz,tol;
		// Domain variables
		double Lx,Ly,Lz;
		int nspheres;
		int Nx,Ny,Nz;
		int i,j,k,n;
		int dim = 50; if (rank == 0) printf("dim=%d\n",dim);
		double rlx_setA=1.0;
		double rlx_setB=1.0;

		Fx = Fy = 0.f;
		Fz = 1.0e-4;
		if (rank==0){
			//.......................................................................
			// Reading the domain information file
			//.......................................................................
			ifstream domain("Domain.in");
			if (domain.good()){
				domain >> nprocx;
				domain >> nprocy;
				domain >> nprocz;
				domain >> Nx;
				domain >> Ny;
				domain >> Nz;
				domain >> nspheres;
				domain >> Lx;
				domain >> Ly;
				domain >> Lz;
			}
			else if (nprocs==1){
				nprocx=nprocy=nprocz=1;
				Nx=4; Ny = 4;
				Nz = 4;
				nspheres=0;
				Lx=Ly=Lz=1;
			}
			//.......................................................................
		}
		// **************************************************************
		// Broadcast simulation parameters from rank 0 to all other procs
		MPI_Barrier(comm);
		//.................................................
		MPI_Bcast(&Nx,1,MPI_INT,0,comm);
		MPI_Bcast(&Ny,1,MPI_INT,0,comm);
		MPI_Bcast(&Nz,1,MPI_INT,0,comm);
		MPI_Bcast(&nprocx,1,MPI_INT,0,comm);
		MPI_Bcast(&nprocy,1,MPI_INT,0,comm);
		MPI_Bcast(&nprocz,1,MPI_INT,0,comm);
		MPI_Bcast(&nspheres,1,MPI_INT,0,comm);
		MPI_Bcast(&Lx,1,MPI_DOUBLE,0,comm);
		MPI_Bcast(&Ly,1,MPI_DOUBLE,0,comm);
		MPI_Bcast(&Lz,1,MPI_DOUBLE,0,comm);
		//.................................................
		MPI_Barrier(comm);
		// **************************************************************
		// **************************************************************

		if (nprocs != nprocx*nprocy*nprocz){
			printf("nprocx =  %i \n",nprocx);
			printf("nprocy =  %i \n",nprocy);
			printf("nprocz =  %i \n",nprocz);
			INSIST(nprocs == nprocx*nprocy*nprocz,"Fatal error in processor count!");
		}

		if (rank==0){
			printf("********************************************************\n");
			printf("Sub-domain size = %i x %i x %i\n",Nx,Ny,Nz);
			printf("********************************************************\n");
		}

		MPI_Barrier(comm);
		kproc = rank/(nprocx*nprocy);
		jproc = (rank-nprocx*nprocy*kproc)/nprocx;
		iproc = rank-nprocx*nprocy*kproc-nprocz*jproc;

		if (rank == 0) {
			printf("i,j,k proc=%d %d %d \n",iproc,jproc,kproc);
		}
		MPI_Barrier(comm);
		if (rank == 1){
			printf("i,j,k proc=%d %d %d \n",iproc,jproc,kproc);
			printf("\n\n");
		}

		double iVol_global = 1.0/Nx/Ny/Nz/nprocx/nprocy/nprocz;
		int BoundaryCondition=0;

		Domain Dm(Nx,Ny,Nz,rank,nprocx,nprocy,nprocz,Lx,Ly,Lz,BoundaryCondition);


		Nx += 2;
		Ny += 2;
		Nz += 2;
		int N = Nx*Ny*Nz;

		//.......................................................................
		// Assign the phase ID field
		//.......................................................................
		char LocalRankString[8];
		sprintf(LocalRankString,"%05d",rank);
		char LocalRankFilename[40];
		sprintf(LocalRankFilename,"ID.%05i",rank);
		/*
		FILE *IDFILE = fopen(LocalRankFilename,"rb");
		if (IDFILE==NULL) ERROR("Error opening file: ID.xxxxx");
		fread(Dm.id,1,N,IDFILE);
		fclose(IDFILE);
		*/

		Dm.CommInit(comm);

		//.......................................................................
		// Compute the media porosity
		//.......................................................................
		double sum;
		double sum_local=0.0, porosity;
		int Np=0;  // number of local pore nodes
		for (k=1;k<Nz-1;k++){
			for (j=1;j<Ny-1;j++){
				for (i=1;i<Nx-1;i++){
					n = k*Nx*Ny+j*Nx+i;
					Dm.id[n] = 1;
					if (Dm.id[n] > 0){
						sum_local+=1.0;
						Np++;
					}
				}
			}
		}
		MPI_Allreduce(&sum_local,&sum,1,MPI_DOUBLE,MPI_SUM,comm);
		porosity = sum*iVol_global;
		if (rank==0) printf("Media porosity = %f \n",porosity);

		MPI_Barrier(comm);
		if (rank == 0) cout << "Domain set." << endl;
		if (rank==0)	printf ("Create ScaLBL_Communicator \n");

		// Create a communicator for the device
		ScaLBL_Communicator ScaLBL_Comm(Dm);

		//...........device phase ID.................................................
		if (rank==0)	printf ("Copying phase ID to device \n");
		char *ID;
		ScaLBL_AllocateDeviceMemory((void **) &ID, N);						// Allocate device memory
		// Copy to the device
		ScaLBL_CopyToDevice(ID, Dm.id, N);
		//...........................................................................

		if (rank==0){
			printf("Total domain size = %i \n",N);
			printf("Reduced domain size = %i \n",Np);
		}


		// LBM variables
		if (rank==0)	printf ("Allocating distributions \n");

		int neighborSize=18*Np*sizeof(int);
		int *neighborList;
		IntArray Map(Nx,Ny,Nz);

		neighborList= new int[18*Np];
		ScaLBL_Comm.MemoryOptimizedLayoutAA(Map,neighborList,Dm.id,Np);
		// ScaLBL_Comm.MemoryDenseLayoutFull(Map,neighborList,Dm.id,Np);    // this was how I tested for correctness

		MPI_Barrier(comm);

		//......................device distributions.................................
		int dist_mem_size = Np*sizeof(double);

		int *NeighborList;
		//		double *f_even,*f_odd;
		double * dist;
		double * Velocity;
		//...........................................................................
		ScaLBL_AllocateDeviceMemory((void **) &dist, 19*dist_mem_size);
		ScaLBL_AllocateDeviceMemory((void **) &NeighborList, neighborSize);
		ScaLBL_AllocateDeviceMemory((void **) &Velocity, 3*sizeof(double)*Np);
		ScaLBL_CopyToDevice(NeighborList,     neighborList, neighborSize);
		//...........................................................................

		/*
		 *  AA Algorithm begins here
		 *
		 */
		//ScaLBL_D3Q19_Init(ID, dist, &dist[10*Np], Np, 1, 1);
		double *DIST;
		DIST = new double [19*Np];
		double VALUE=0.1;

		for (int n=0; n<Np; n++){
		     //DIST[n]=1.0;
		  // even distributions
		   DIST[Np + n] = 1.0 - VALUE;
		   DIST[2*Np + n] = 1.0 - VALUE;
		   DIST[3*Np + n] = 1.0 - VALUE;
		   DIST[4*Np + n] = 1.0;
		   DIST[5*Np + n] = 1.0;
		   DIST[6*Np + n] = 1.0;
		   DIST[7*Np + n] = 1.0;
		   DIST[8*Np + n] = 1.0;
		   DIST[9*Np + n] = 1.0;
		   // odd distributions
		   DIST[10*Np + n] = 1.0;
		   DIST[11*Np + n] = 1.0;
		   DIST[12*Np + n] = 1.0;
		   DIST[13*Np + n] = 1.0;
		   DIST[14*Np + n] = 1.0;
		   DIST[15*Np + n] = 1.0;
		   DIST[16*Np + n] = 1.0;
		   DIST[17*Np + n] = 1.0;
		   DIST[18*Np + n] = 1.0;
	 	}

		ScaLBL_CopyToDevice(dist, DIST, 19*Np*sizeof(double));	

	
	   double *Vz;
  	   Vz= new double [Np];
	   size_t SIZE=Np*sizeof(double);
	   ScaLBL_D3Q19_Momentum(dist, Velocity, Np);
	   ScaLBL_CopyToHost(&Vz[0],&Velocity[2],SIZE);
	   // 
	   for (int n=0; n<Np; n++){
	     if (Vz[n] - VALUE > 1e-8){
	       printf("ERROR: site %i, value=%f \n",n,Vz[n]); check = 15;
	     }
	   }
	}
	// ****************************************************
	MPI_Barrier(comm);
	MPI_Finalize();
	// ****************************************************
}