68 lines
2.0 KiB
C++
68 lines
2.0 KiB
C++
/*
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* averaging tools for electrochemistry
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*/
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#ifndef ElectroChem_INC
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#define ElectroChem_INC
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#include <vector>
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#include "common/Domain.h"
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#include "common/Utilities.h"
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#include "common/MPI.h"
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#include "common/Communication.h"
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#include "analysis/analysis.h"
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#include "analysis/distance.h"
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#include "analysis/Minkowski.h"
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#include "IO/MeshDatabase.h"
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#include "IO/Reader.h"
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#include "IO/Writer.h"
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#include "models/IonModel.h"
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#include "models/PoissonSolver.h"
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#include "models/StokesModel.h"
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class ElectroChemistryAnalyzer{
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public:
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std::shared_ptr <Domain> Dm;
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double Volume;
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// input variables
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double rho_n, rho_w;
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double nu_n, nu_w;
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double gamma_wn, beta;
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double Fx, Fy, Fz;
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//...........................................................................
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int Nx,Ny,Nz;
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DoubleArray Rho; // density field
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DoubleArray ChemicalPotential; // density field
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DoubleArray ElectricalPotential; // density field
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DoubleArray ElectricalField_x; // density field
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DoubleArray ElectricalField_y; // density field
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DoubleArray ElectricalField_z; // density field
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DoubleArray Pressure; // pressure field
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DoubleArray Vel_x; // velocity field
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DoubleArray Vel_y;
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DoubleArray Vel_z;
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DoubleArray SDs;
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DoubleArray IonFluxDiffusive_x; //ion diffusive flux components
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DoubleArray IonFluxDiffusive_y;
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DoubleArray IonFluxDiffusive_z;
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DoubleArray IonFluxAdvective_x; //ion advective flux components
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DoubleArray IonFluxAdvective_y;
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DoubleArray IonFluxAdvective_z;
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DoubleArray IonFluxElectrical_x; //ion electromigration flux components
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DoubleArray IonFluxElectrical_y;
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DoubleArray IonFluxElectrical_z;
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ElectroChemistryAnalyzer(std::shared_ptr <Domain> Dm);
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~ElectroChemistryAnalyzer();
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void SetParams();
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void Basic( ScaLBL_IonModel &Ion, ScaLBL_Poisson &Poisson, ScaLBL_StokesModel &Stokes, int timestep);
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void WriteVis( ScaLBL_IonModel &Ion, ScaLBL_Poisson &Poisson, ScaLBL_StokesModel &Stokes, std::shared_ptr<Database> input_db, int timestep);
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private:
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FILE *TIMELOG;
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};
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#endif
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