60 lines
1.4 KiB
Bash
Executable File
60 lines
1.4 KiB
Bash
Executable File
#!/bin/bash
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#PBS -A GEO106
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#PBS -N MorphOpen
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#PBS -j oe
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##PBS -l walltime=02:00:00,nodes=216
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#PBS -l walltime=08:00:00,nodes=18
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##PBS -l gres=widow2%widow3
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##PBS -q killable
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##PBS -q debug
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#cd /tmp/work/$USER
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date
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cd $PBS_O_WORKDIR
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#LBPM_WIA_INSTALL_DIR=/lustre/atlas/proj-shared/geo106/build-eos-LBPM-WIA
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LBPM_WIA_INSTALL_DIR=/ccs/proj/geo106/eos/LBPM-WIA
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#echo "PBS_O_WORKDIR: `echo $PBS_O_WORKDIR`"
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source $MODULESHOME/init/bash
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module swap PrgEnv-intel PrgEnv-gnu
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module load python_anaconda
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#module swap cray-mpich2 cray-mpich2/5.6.3
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#module load cudatoolkit
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export LD_LIBRARY_PATH=${CRAY_LD_LIBRARY_PATH}:${LD_LIBRARY_PATH}
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cp ../MEDIA/ID* ./
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LABEL=$(basename $PWD)
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rm sw.log
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# List of saturations to generate using Morphological opening
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SW="0.85 0.80 0.75 0.70 0.65 0.60 0.55 0.5 0.45 0.4 0.35 0.3 0.25 0.2 0.15"
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echo "r sw" > morphopen.csv
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NUMPROCS=288
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for sw in $SW; do
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echo $sw >> sw.log
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aprun -n $NUMPROCS $LBPM_WIA_INSTALL_DIR/bin/lbpm_morphopen_pp $sw > morphopen.log
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radius=$(grep "Final critical radius" morphopen.log | sed 's/Final critical radius=//g')
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saturation=$(grep "Final saturation" morphopen.log | sed 's/Final saturation=//g')
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echo "$radius $saturation" >> morphopen.csv
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tag="sw_$sw"
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DIR=$LABEL"_open_"$tag
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mkdir -p $DIR
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cp ID.* $DIR
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cp SignDist.* $DIR
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cp Domain.in $DIR
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cp Color.in $DIR
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done
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exit;
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