LBPM/IO/Mesh.h

#ifndef MESH_INC
#define MESH_INC

#include <iostream>
#include <memory>
#include <string.h>
#include <vector>

#include "common/Array.h"
#include "common/Communication.h"
#include "analysis/PointList.h"


namespace IO {


//! Possible variable types
enum class VariableType: unsigned char { NodeVariable=1, EdgeVariable=2, SurfaceVariable=2, VolumeVariable=3, NullVariable=0 };
enum class DataType: unsigned char { Double=1, Float=2, Int=2, Null=0 };


/*! \class Mesh
    \brief A base class for meshes
*/
class Mesh
{
public:
    //! Destructor
    virtual ~Mesh();
    //! Mesh class name (eg. PointList)
    virtual std::string className() const = 0;
    //! Number of points for the given variable type
    virtual size_t numberPointsVar( VariableType type ) const = 0;
    //! Pack the data
    virtual std::pair<size_t,void*> pack( int level ) const = 0;
    //! Unpack the data
    virtual void unpack( const std::pair<size_t,void*>& data ) = 0;
protected:
    //! Empty constructor
    Mesh();
    Mesh(const Mesh&);
    Mesh& operator=(const Mesh&);
};


/*! \class PointList
    \brief A class used to hold a list of verticies
*/
class PointList: public Mesh
{
public:
    //! Empty constructor
    PointList();
    //! Constructor for N points
    PointList( size_t N );
    //! Destructor
    virtual ~PointList();
    //! Mesh class name
    virtual std::string className() const { return "PointList"; }
    //! Number of points for the given variable type
    virtual size_t numberPointsVar( VariableType type ) const;
    //! Pack the data
    virtual std::pair<size_t,void*> pack( int level ) const;
    //! Unpack the data
    virtual void unpack( const std::pair<size_t,void*>& data );
    //! Access the points
    const std::vector<Point>& getPoints() const { return points; }
public:
    std::vector<Point>  points;  //!< List of points vertex
};


/*! \class TriList
    \brief A class used to hold a list of triangles specified by their vertex coordinates
*/
class TriMesh;
class TriList: public Mesh
{
public:
    //! Empty constructor
    TriList();
    //! Constructor for N triangles
    TriList( size_t N_tri );
    //! Constructor from TriMesh
    TriList( const TriMesh& );
    //! Destructor
    virtual ~TriList();
    //! Mesh class name
    virtual std::string className() const { return "TriList"; }
    //! Number of points for the given variable type
    virtual size_t numberPointsVar( VariableType type ) const;
    //! Pack the data
    virtual std::pair<size_t,void*> pack( int level ) const;
    //! Unpack the data
    virtual void unpack( const std::pair<size_t,void*>& data );
public:
    std::vector<Point>  A;      //!< First vertex
    std::vector<Point>  B;      //!< Second vertex
    std::vector<Point>  C;      //!< Third vertex
};


/*! \class TriMesh
    \brief A class used to hold a list of trianges specified by their vertex number and list of coordiantes
*/
class TriMesh: public Mesh
{
public:
    //! TriMesh constructor
    TriMesh();
    //! Constructor for Nt triangles and Np points
    TriMesh( size_t N_tri, size_t N_point );
    //! Constructor for Nt triangles and the given points
    TriMesh( size_t N_tri, std::shared_ptr<PointList> points );
    //! Constructor from TriList
    TriMesh( const TriList& );
    //! Destructor
    virtual ~TriMesh();
    //! Mesh class name
    virtual std::string className() const { return "TriMesh"; }
    //! Number of points for the given variable type
    virtual size_t numberPointsVar( VariableType type ) const;
    //! Pack the data
    virtual std::pair<size_t,void*> pack( int level ) const;
    //! Unpack the data
    virtual void unpack( const std::pair<size_t,void*>& data );
public:
    std::shared_ptr<PointList> vertices;    //!< List of verticies
    std::vector<int>    A;                  //!< First vertex
    std::vector<int>    B;                  //!< Second vertex
    std::vector<int>    C;                  //!< Third vertex
};


/*! \class Domain
    \brief A class used to hold the domain
*/
class DomainMesh: public Mesh
{
public:
    //! Empty constructor
    DomainMesh();
    //! Default constructor
    DomainMesh( RankInfoStruct rank_data, int nx, int ny, int nz, double Lx, double Ly, double Lz );
    //! Destructor
    virtual ~DomainMesh();
    //! Mesh class name
    virtual std::string className() const { return "DomainMesh"; }
    //! Number of points for the given variable type
    virtual size_t numberPointsVar( VariableType type ) const;
    //! Pack the data
    virtual std::pair<size_t,void*> pack( int level ) const;
    //! Unpack the data
    virtual void unpack( const std::pair<size_t,void*>& data );
public:
    int nprocx, nprocy, nprocz, rank;
    int nx, ny, nz;
    double Lx, Ly, Lz;
};



/*! \class Variable
    \brief A base class for variables
*/
struct Variable
{
public:
    // Internal variables
    unsigned char dim;          //!< Number of points per grid point (1: scalar, 3: vector, ...)
    VariableType type;          //!< Variable type
    DataType precision;         //!< Variable precision to use for IO
    std::string name;           //!< Variable name
    Array<double> data;         //!< Variable data
    //! Empty constructor
    Variable(): dim(0), type(VariableType::NullVariable), precision(DataType::Double) {}
    //! Constructor
    Variable( int dim_, IO::VariableType type_, const std::string& name_ ):
        dim(dim_), type(type_), precision(DataType::Double), name(name_) {}
    //! Constructor
    Variable( int dim_, IO::VariableType type_, const std::string& name_, const Array<double>& data_ ):
        dim(dim_), type(type_), precision(DataType::Double), name(name_), data(data_) {}
    //! Destructor
    virtual ~Variable() {}
protected:
    //! Empty constructor
    Variable(const Variable&);
    Variable& operator=(const Variable&);
};



/*! \class MeshDataStruct
    \brief A class used to hold database info for saving a mesh
*/
struct MeshDataStruct {
    DataType precision;         //!< Precision to use for IO (mesh)
    std::string meshName;       //!< Mesh name
    std::shared_ptr<Mesh> mesh; //!< Mesh data
    std::vector<std::shared_ptr<Variable> >  vars;
    //! Empty constructor
    MeshDataStruct(): precision(DataType::Double) {}
    //! Check the data
    bool check() const;
};


//! Convert the mesh to a TriMesh (will return NULL if this is invalid)
std::shared_ptr<PointList> getPointList( std::shared_ptr<Mesh> mesh );
std::shared_ptr<TriMesh> getTriMesh( std::shared_ptr<Mesh> mesh );
std::shared_ptr<TriList> getTriList( std::shared_ptr<Mesh> mesh );
std::shared_ptr<const PointList> getPointList( std::shared_ptr<const Mesh> mesh );
std::shared_ptr<const TriMesh> getTriMesh( std::shared_ptr<const Mesh> mesh );
std::shared_ptr<const TriList> getTriList( std::shared_ptr<const Mesh> mesh );


} // IO namespace

#endif