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HDF5 must be compiled with special options to support multithreading. Disable file object multithreading for HDF5. Some vector types are not supported, as the support in opm-common reader is not complete (region, region_to_region, ...).
251 lines
8.5 KiB
C++
251 lines
8.5 KiB
C++
#ifdef USE_HDF5
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#include "gtest/gtest.h"
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#include "RiaTestDataDirectory.h"
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#include "RifHdf5SummaryReader.h"
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#include "RifOpmHdf5Summary.h"
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#include "H5Cpp.h"
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#include <iostream>
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#include "opm/io/eclipse/ESmry.hpp"
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static const QString H5_TEST_DATA_DIRECTORY = QString( "%1/h5-file/" ).arg( TEST_DATA_DIR );
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//--------------------------------------------------------------------------------------------------
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///
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//--------------------------------------------------------------------------------------------------
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TEST( HDFTests, InspectSummaryData )
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{
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std::string file_path = H5_TEST_DATA_DIRECTORY.toStdString() + "NORNE_ATW2013_RFTPLT_V2.h5";
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try
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{
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H5::Exception::dontPrint(); // Turn off auto-printing of failures to handle the errors appropriately
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H5::H5File file( file_path.c_str(), H5F_ACC_RDONLY );
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{
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H5::Group GridFunction_00002 = file.openGroup( "summary_vectors/BPR/66" );
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H5::DataSet dataset = H5::DataSet( GridFunction_00002.openDataSet( "values" ) );
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hsize_t dims[2];
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H5::DataSpace dataspace = dataset.getSpace();
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dataspace.getSimpleExtentDims( dims, nullptr );
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std::vector<double> values;
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values.resize( dims[0] );
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dataset.read( values.data(), H5::PredType::NATIVE_DOUBLE );
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EXPECT_EQ( size_t( 894 ), values.size() );
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}
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}
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catch ( H5::FileIException& error ) // catch failure caused by the H5File operations
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{
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std::cout << error.getCDetailMsg();
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}
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catch ( H5::DataSetIException& error ) // catch failure caused by the DataSet operations
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{
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std::cout << error.getCDetailMsg();
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}
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catch ( H5::DataSpaceIException& error ) // catch failure caused by the DataSpace operations
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{
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std::cout << error.getCDetailMsg();
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}
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catch ( H5::DataTypeIException& error ) // catch failure caused by the DataSpace operations
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{
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std::cout << error.getCDetailMsg();
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}
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}
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//--------------------------------------------------------------------------------------------------
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///
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//--------------------------------------------------------------------------------------------------
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TEST( HDFTests, ReadSummaryData )
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{
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QString filePath = H5_TEST_DATA_DIRECTORY + "NORNE_ATW2013_RFTPLT_V2.h5";
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RifHdf5SummaryReader hdf5SummaryReader( filePath );
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auto vectorNames = hdf5SummaryReader.vectorNames();
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EXPECT_EQ( size_t( 211 ), vectorNames.size() );
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auto timeSteps = hdf5SummaryReader.timeSteps();
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EXPECT_EQ( size_t( 894 ), timeSteps.size() );
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}
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//--------------------------------------------------------------------------------------------------
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///
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//--------------------------------------------------------------------------------------------------
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TEST( HDFTests, ReadOpmSummaryData )
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{
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QString filePath = H5_TEST_DATA_DIRECTORY + "NORNE_ATW2013_RFTPLT_V2.SMSPEC";
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RifOpmHdf5Summary hdf5SummaryReader;
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hdf5SummaryReader.open( filePath, false, nullptr );
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auto addresses = hdf5SummaryReader.allResultAddresses();
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EXPECT_EQ( size_t( 2770 ), addresses.size() );
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int itemCount = 0;
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size_t totalValueCount = 0;
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for ( const auto& adr : addresses )
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{
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if ( itemCount++ < 10 )
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{
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std::vector<double> values;
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hdf5SummaryReader.values( adr, &values );
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totalValueCount += values.size();
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}
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}
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EXPECT_EQ( size_t( 8940 ), totalValueCount );
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}
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//--------------------------------------------------------------------------------------------------
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///
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//--------------------------------------------------------------------------------------------------
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TEST( DISABLED_HDFTests, ReadOpmSummaryDataListContent )
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{
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QString filePath = H5_TEST_DATA_DIRECTORY + "NORNE_ATW2013_RFTPLT_V2.SMSPEC";
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Opm::EclIO::ESmry eSmry( filePath.toStdString() );
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auto nodes = eSmry.summaryNodeList();
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for ( size_t i = 0; i < nodes.size(); i++ )
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{
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Opm::EclIO::SummaryNode n = nodes[i];
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std::cout << n.keyword << " number: " << n.number << " msjNumber: " << n.smspecKeywordIndex << " "
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<< n.unique_key() << "\n";
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}
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}
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//--------------------------------------------------------------------------------------------------
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///
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//--------------------------------------------------------------------------------------------------
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TEST( DISABLED_HDFTests, BasicFileRead )
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{
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std::string file_path = "D:/ResInsight/SourSim/PKMUNK_NOV_TEST_SS.sourpre.00001";
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try
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{
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H5::Exception::dontPrint(); // Turn off auto-printing of failures to handle the errors appropriately
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H5::H5File file( file_path.c_str(), H5F_ACC_RDONLY );
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{
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H5::Group timestep = file.openGroup( "Timestep_00001" );
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H5::Attribute attr = timestep.openAttribute( "timestep" );
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double timestep_value = 0.0;
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H5::DataType type = attr.getDataType();
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attr.read( type, ×tep_value );
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// std::cout << "Timestep value " << timestep_value << std::endl;
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EXPECT_NEAR( timestep_value, 1.0, 1e-1 );
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}
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{
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// Group size is not an attribute!
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H5::Group GridFunctions = file.openGroup( "Timestep_00001/GridParts/GridPart_00000/GridFunctions" );
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hsize_t group_size = GridFunctions.getNumObjs();
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// std::cout << "GridFunctions group_size " << group_size << std::endl;
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EXPECT_EQ( size_t( 20 ), group_size );
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/* for (hsize_t i = 0; i < group_size; i++)
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{
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// H5std_string node_name = GridFunctions.getObjnameByIdx(i); // crashes on VS2017 due
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to lib/heap/runtime differences to HDF5 VS2015 lib
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std::string node_name;
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node_name.resize(1024);
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ssize_t slen = GridFunctions.getObjnameByIdx(i, &node_name[0], 1023);
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node_name.resize(slen + 1);
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std::cout << "GridFunctions sub-node name " << node_name << std::endl;
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}
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*/
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std::string first_subnode( 1024, '\0' );
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ssize_t slen = GridFunctions.getObjnameByIdx( 0, &first_subnode[0], 1023 );
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first_subnode.resize( slen + 1 );
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EXPECT_TRUE( first_subnode.compare( 0, slen, "GridFunction_00002" ) == 0 );
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}
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{
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H5::Group GridFunction_00002 =
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file.openGroup( "Timestep_00001/GridParts/GridPart_00000/GridFunctions/GridFunction_00002" );
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H5::Attribute attr = GridFunction_00002.openAttribute( "limits_max" );
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double limits_max = 0.0;
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H5::DataType type = attr.getDataType();
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attr.read( type, &limits_max );
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// std::cout << "limits_max " << limits_max << std::endl;
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EXPECT_NEAR( limits_max, 0.3970204292629652, 1e-10 );
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}
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{
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H5::Group GridFunction_00002 =
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file.openGroup( "Timestep_00001/GridParts/GridPart_00000/GridFunctions/GridFunction_00002" );
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H5::DataSet dataset = H5::DataSet( GridFunction_00002.openDataSet( "values" ) );
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hsize_t dims[2];
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H5::DataSpace dataspace = dataset.getSpace();
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dataspace.getSimpleExtentDims( dims, nullptr );
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std::vector<double> values;
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values.resize( dims[0] );
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dataset.read( values.data(), H5::PredType::NATIVE_DOUBLE );
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/* for (hsize_t i = 0; i < dims[0]; i++)
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{
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std::cout << "value " << i << " " << values[i] << std::endl;
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}
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*/
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EXPECT_NEAR( values[0], 0.32356910366452146, 1e-10 );
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EXPECT_NEAR( values[dims[0] - 1], 0.12200070891582514, 1e-10 );
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}
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} // end of try block
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catch ( H5::FileIException& error ) // catch failure caused by the H5File operations
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{
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std::cout << error.getCDetailMsg();
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}
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catch ( H5::DataSetIException& error ) // catch failure caused by the DataSet operations
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{
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std::cout << error.getCDetailMsg();
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}
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catch ( H5::DataSpaceIException& error ) // catch failure caused by the DataSpace operations
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{
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std::cout << error.getCDetailMsg();
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}
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catch ( H5::DataTypeIException& error ) // catch failure caused by the DataSpace operations
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{
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std::cout << error.getCDetailMsg();
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}
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}
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#endif // USE_HDF5
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