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opm-simulators/opm/simulators/utils/initDamarisXmlFile.cpp
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Move XML template to separate file, fix formatting, and use path.
2022-10-07 16:04:40 +02:00
/*
Move Damaris functionality to it's own class.
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Copyright 2022 2023 Inria, Bretagne–Atlantique Research Center
Move XML template to separate file, fix formatting, and use path.
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Copyright 2022 SINTEF Digital, Mathematics and Cybernetics.
This file is part of the Open Porous Media project (OPM).
OPM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
OPM is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with OPM. If not, see <http://www.gnu.org/licenses/>.
*/
#include <string>
namespace Opm::DamarisOutput
{
/*
Below is the XML file for Damaris that is supported by Damaris.
The entries in the map below will be filled by corresponding Damaris
Keywords.
Move Damaris functionality to it's own class.
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N.B. Ensure all text items that are to be replaced are quoted with double quotes
e.g. unit="_REPLACE_UNIT_"
*not* unit=_REPLACE_UNIT_
Move XML template to separate file, fix formatting, and use path.
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*/
std::string initDamarisXmlFile()
{
std::string init_damaris = R"V0G0N(<?xml version="1.0"?>
Geometric mesh data added for in-situ visualisation
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<simulation name="_SIM_NAME_" language="c" xmlns="http://damaris.gforge.inria.fr/damaris/model">
Move XML template to separate file, fix formatting, and use path.
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<architecture>
<domains count="1"/>
<dedicated cores="_DC_REGEX_" nodes="_DN_REGEX_"/>
finalise the PR 4889 modifications - added command line option to specifiy the shared memory file name in the <buffer> XML element --damaris-shared-memory-name which will be a randomised string opm-damaris-<random-string> for better multi-simulation behaviour when running more than one simulation on a single node.
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<buffer name="_SHMEM_NAME_" size="_SHMEM_BUFFER_BYTES_REGEX_" />
Move XML template to separate file, fix formatting, and use path.
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<placement />
<queue name="queue" size="300" />
</architecture>
Geometric mesh data added for in-situ visualisation
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<data>
Move XML template to separate file, fix formatting, and use path.
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<parameter name="n_elements_total" type="int" value="1" />
<parameter name="n_elements_local" type="int" value="1" />
<parameter name="n" type="int" value="1" />
update after pull request comments; addition of OUTPUTDIR variable to Damaris XML configuration
2024-05-17 17:36:18 +02:00
<parameter name="path_string_length" type="int" value="1" />
<layout name="path_string_layout" type="char" dimensions="path_string_length" comment="The length of the output directory path string" />
<variable name="OUTPUTDIR" layout="path_string_layout" type="scalar" visualizable="false" mesh="#" unit="" time-varying="false" store="#" script="_MAKE_AVAILABLE_IN_PYTHON_" />
Geometric mesh data added for in-situ visualisation
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<layout name="zonal_layout_usmesh_integer" type="int" dimensions="n_elements_local" global="n_elements_total" comment="For the field data e.g. Pressure" />
adding command line option to specify the dask file being used --damaris-dask-file= that will add the file name to the Daamris XML configuration file
2023-11-11 09:22:30 +01:00
<variable name="GLOBAL_CELL_INDEX" layout="zonal_layout_usmesh_integer" type="scalar" visualizable="false" time-varying="false" centering="zonal" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
Geometric mesh data added for in-situ visualisation
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<layout name="zonal_layout_usmesh" type="double" dimensions="n_elements_local" global="n_elements_total" comment="For the field data e.g. Pressure" />
Corrected simlation name default if not specified on command line;
2023-09-25 21:03:34 +02:00
<variable name="PRESSURE" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="_PRESSURE_UNIT_" centering="zonal" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
Geometric mesh data added for in-situ visualisation
2023-09-22 23:23:29 +02:00
update after pull request comments; addition of OUTPUTDIR variable to Damaris XML configuration
2024-05-17 17:36:18 +02:00
added ability to pass through multiple variables to Damaris, with full list still defined in initDamarisXmlFile.cpp ; Also adds ability to limit the variables to be passed through using --damaris-limit-variables=<CSV list> coammand line option
2024-05-14 21:08:47 +02:00
Move XML template to separate file, fix formatting, and use path.
2022-10-07 16:04:40 +02:00
_MORE_VARIABLES_REGEX_
Improved in-line help comments; output MPI cell values to HDF5 only when saving mesh to HDF5; removed timing data
2023-12-14 10:27:05 +01:00
<variable name="MPI_RANK" layout="zonal_layout_usmesh_integer" type="scalar" visualizable="true" mesh="us_mesh" unit="rank" centering="zonal" store="_MYSTORE_MESH_OR_EMPTY_REGEX_" time-varying="false" select-file="GLOBAL_CELL_INDEX" script="_MAKE_AVAILABLE_IN_PYTHON_" comment="The MPI rank of each cell"/>
Move Damaris functionality to it's own class.
2023-09-09 23:02:09 +02:00
added ability to pass through multiple variables to Damaris, with full list still defined in initDamarisXmlFile.cpp ; Also adds ability to limit the variables to be passed through using --damaris-limit-variables=<CSV list> coammand line option
2024-05-14 21:08:47 +02:00
<variable name="FIPGAS" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="FIPOIL" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="FIPWAT" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="KRNSW_GO" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="KRNSW_OW" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="PCSWM_GO" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="PCSWM_OW" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="PPCW" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="Bar" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="RS" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="Bar" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" comment="Dissolved Gas units Gas Oil Ratio" />
<variable name="RV" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="Bar" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="SOMAX" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="1OVERBG" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="1OVERBO" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="1OVERBW" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GASKR" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GAS_DEN" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GAS_VISC" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="OILKR" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="OIL_DEN" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="OIL_VISC" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="WATKR" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="WAT_DEN" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="WAT_VISC" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
Move Damaris functionality to it's own class.
2023-09-09 23:02:09 +02:00
added ability to pass through multiple variables to Damaris, with full list still defined in initDamarisXmlFile.cpp ; Also adds ability to limit the variables to be passed through using --damaris-limit-variables=<CSV list> coammand line option
2024-05-14 21:08:47 +02:00
<variable name="2FBF" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="4FBF" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="DFBF" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GCDI" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GCDM" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GIP" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GIPG" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GIPL" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GIPR" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GKDI" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GKDM" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GKMO" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GKTR" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GMDS" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GMGP" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GMIP" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GMMO" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="GMTR" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="HTOF" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="OIP" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="OIPG" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="OIPL" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="OIPR" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="RPV" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="S36F" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="SEAF" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="SGAS" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="SIP" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="SWAT" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="TFBF" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="WCD" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="WIP" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="WIPG" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="WIPL" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<variable name="WIPR" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
Geometric mesh data added for in-situ visualisation
2023-09-22 23:23:29 +02:00
Move Damaris functionality to it's own class.
2023-09-09 23:02:09 +02:00
<parameter name="n_coords_local" type="int" value="1" />
<layout name="n_coords_layout" type="double" dimensions="n_coords_local" comment="For the individual x, y and z coordinates of the mesh vertices, these values are referenced in the topologies/topo/subelements/connectivity_pg data" />
<group name="coordset/coords/values">
final review changes from PR 4889 and added extra command line argument to output mesh data --damaris-save-mesh-to-hdf
2023-12-12 21:48:17 +01:00
<variable name="x" layout="n_coords_layout" type="scalar" visualizable="false" unit="m" script="_MAKE_AVAILABLE_IN_PYTHON_" time-varying="false" store="_MYSTORE_MESH_OR_EMPTY_REGEX_" />
<variable name="y" layout="n_coords_layout" type="scalar" visualizable="false" unit="m" script="_MAKE_AVAILABLE_IN_PYTHON_" time-varying="false" store="_MYSTORE_MESH_OR_EMPTY_REGEX_" />
<variable name="z" layout="n_coords_layout" type="scalar" visualizable="false" unit="m" script="_MAKE_AVAILABLE_IN_PYTHON_" time-varying="false" store="_MYSTORE_MESH_OR_EMPTY_REGEX_" />
Move Damaris functionality to it's own class.
2023-09-09 23:02:09 +02:00
</group>
Geometric mesh data added for in-situ visualisation
2023-09-22 23:23:29 +02:00
Move Damaris functionality to it's own class.
2023-09-09 23:02:09 +02:00
<parameter name="n_connectivity_ph" type="int" value="1" />
<layout name="n_connections_layout_ph" type="int" dimensions="n_connectivity_ph" comment="Layout for connectivities " />
<parameter name="n_offsets_types_ph" type="int" value="1" />
overhaul of GridDataOutput class to accept a vector type so that raw pointers are not overrun, this has lead to finding a good way to get the size of the data area that is alloacted by the DamarisVar wrapper class for damaris_alloc()
2023-12-11 21:30:18 +01:00
<layout name="n_offsets_layout_ph" type="int" dimensions="n_offsets_types_ph" comment="Layout for the offsets_ph" />
Move Damaris functionality to it's own class.
2023-09-09 23:02:09 +02:00
<layout name="n_types_layout_ph" type="char" dimensions="n_offsets_types_ph" comment="Layout for the types_ph " />
<group name="topologies/topo/elements">
final review changes from PR 4889 and added extra command line argument to output mesh data --damaris-save-mesh-to-hdf
2023-12-12 21:48:17 +01:00
<variable name="connectivity" layout="n_connections_layout_ph" type="scalar" visualizable="false" script="_MAKE_AVAILABLE_IN_PYTHON_" time-varying="false" store="_MYSTORE_MESH_OR_EMPTY_REGEX_" />
<variable name="offsets" layout="n_offsets_layout_ph" type="scalar" visualizable="false" script="_MAKE_AVAILABLE_IN_PYTHON_" time-varying="false" store="_MYSTORE_MESH_OR_EMPTY_REGEX_" />
<variable name="types" layout="n_types_layout_ph" type="scalar" visualizable="false" script="_MAKE_AVAILABLE_IN_PYTHON_" time-varying="false" store="_MYSTORE_MESH_OR_EMPTY_REGEX_" />
Move Damaris functionality to it's own class.
2023-09-09 23:02:09 +02:00
</group>
Geometric mesh data added for in-situ visualisation
2023-09-22 23:23:29 +02:00
<mesh name="us_mesh" type="unstructured" topology="3" time-varying="false"
Move Damaris functionality to it's own class.
2023-09-09 23:02:09 +02:00
comment="This Mesh definition is for connection with Paraview.
This definition references the variables that define an unstructured mesh specified above." >
<coord name="coordset/coords/values/x" unit="m" />
<coord name="coordset/coords/values/y" unit="m" />
<coord name="coordset/coords/values/z" unit="m" />
<vertex_global_id name="#" offset="0" />
<element_offsets name="topologies/topo/elements/offsets" />
<section_types name="topologies/topo/elements/types" />
<section_sizes name="#" />
<section_connectivity name="topologies/topo/elements/connectivity" />
<polyhedral_cell_faces_connectivity name="#" />
<polyhedral_cell_faces_offsets name="#" />
<polyhedral_n_faces_per_cell name="#" />
</mesh>
Geometric mesh data added for in-situ visualisation
2023-09-22 23:23:29 +02:00
Move XML template to separate file, fix formatting, and use path.
2022-10-07 16:04:40 +02:00
</data>
<storage>
<store name="MyStore" type="HDF5">
<option key="FileMode">_File_Mode</option>
<option key="XDMFMode">NoIteration</option>
<option key="FilesPath">_PATH_REGEX_/</option>
</store>
</storage>
Move Damaris functionality to it's own class.
2023-09-09 23:02:09 +02:00
<scripts>
adding command line option to specify the dask file being used --damaris-dask-file= that will add the file name to the Daamris XML configuration file
2023-11-11 09:22:30 +01:00
<_DISABLEPYTHONSTART_pyscript name="PythonScript" file="_PYTHON_SCRIPT_" language="python" frequency="1" scheduler-file="_DASK_SCHEDULER_FILE_" nthreads="0" keep-workers="no" /_DISABLEPYTHONFIN_>
Move Damaris functionality to it's own class.
2023-09-09 23:02:09 +02:00
</scripts>
Update for support of Damaris mesh based in situ processing
2023-09-23 22:24:11 +02:00
<_DISABLEPARAVIEWSTART_paraview update-frequency="1" write-vtk="0" write-vtk-binary="false" >
Geometric mesh data added for in-situ visualisation
2023-09-22 23:23:29 +02:00
<script>_PARAVIEW_PYTHON_SCRIPT_</script>
Update for support of Damaris mesh based in situ processing
2023-09-23 22:24:11 +02:00
</paraview _DISABLEPARAVIEWFIN_>
Move Damaris functionality to it's own class.
2023-09-09 23:02:09 +02:00
Move XML template to separate file, fix formatting, and use path.
2022-10-07 16:04:40 +02:00
<actions>
</actions>
Corrected simlation name default if not specified on command line;
2023-09-25 21:03:34 +02:00
<log FileName="_PATH_REGEX_/damaris_log/_SIM_NAME_" RotationSize="5" LogFormat="[%TimeStamp%]: %Message%" Flush="_LOG_FLUSH_" LogLevel="_LOG_LEVEL_" />
Move XML template to separate file, fix formatting, and use path.
2022-10-07 16:04:40 +02:00
</simulation>)V0G0N";
return init_damaris;
}
} // namespace Opm::DamarisOutput
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