diff --git a/opm/autodiff/FlowMain.hpp b/opm/autodiff/FlowMain.hpp
index a6564e8f0..28994bfcc 100644
--- a/opm/autodiff/FlowMain.hpp
+++ b/opm/autodiff/FlowMain.hpp
@@ -141,10 +141,10 @@ namespace Opm
                 return EXIT_FAILURE;
             }
             asImpl().setupOutput();
-            asImpl().setupLogging();
             asImpl().readDeckInput();
-            asImpl().setupGridAndProps();
+            asImpl().setupLogging();
             asImpl().extractMessages();
+            asImpl().setupGridAndProps();
             asImpl().runDiagnostics();
             asImpl().setupState();
             asImpl().writeInit();
@@ -423,8 +423,16 @@ namespace Opm
             OpmLog::addBackend( "STREAMLOG", streamLog);
             std::shared_ptr<StreamLog> debugLog = std::make_shared<EclipsePRTLog>(debugFile, Log::DefaultMessageTypes, false, output_cout_);
             OpmLog::addBackend( "DEBUGLOG" ,  debugLog);
+            const auto& msgLimits = eclipse_state_->getSchedule()->getMessageLimits();
+            const std::map<int64_t, int> limits = {{Log::MessageType::Note, msgLimits.getCommentPrintLimit(0)},
+                                                   {Log::MessageType::Info, msgLimits.getMessagePrintLimit(0)},
+                                                   {Log::MessageType::Warning, msgLimits.getWarningPrintLimit(0)},
+                                                   {Log::MessageType::Error, msgLimits.getErrorPrintLimit(0)},
+                                                   {Log::MessageType::Problem, msgLimits.getProblemPrintLimit(0)},
+                                                   {Log::MessageType::Bug, msgLimits.getBugPrintLimit(0)}};
+            prtLog->setMessageLimiter(std::make_shared<MessageLimiter>());
             prtLog->setMessageFormatter(std::make_shared<SimpleMessageFormatter>(false));
-            streamLog->setMessageLimiter(std::make_shared<MessageLimiter>(10));
+            streamLog->setMessageLimiter(std::make_shared<MessageLimiter>(10, limits));
             streamLog->setMessageFormatter(std::make_shared<SimpleMessageFormatter>(true));
 
             // Read parameters.