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Update 1 for code after code review of PR 4889

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This commit is contained in:
Josh Bowden
2023-12-08 21:22:55 +01:00
parent 0f1d31c88a
commit 54d6db6f35
10 changed files with 476 additions and 457 deletions
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36
opm/simulators/utils/DamarisOutputModule.cpp
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@@ -35,45 +35,47 @@ namespace Opm::DamarisOutput
std::string initDamarisXmlFile(); // Defined in initDamarisXMLFile.cpp, to avoid messing up this file.
// Initialize Damaris by filling in th XML file and storing it in the chosen directory
/**
* Initialize Damaris by either reading a file specified by the environment variable FLOW_DAMARIS_XML_FILE or
* by filling in th XML file and storing it in the chosen directory
*/
void
initializeDamaris(MPI_Comm comm, int mpiRank, std::map<std::string, std::string>& find_replace_map )
{
int dam_err_;
int dam_err;
/* Get the name of the Damaris input file from an environment variable if available */
const char* cs_damaris_xml_file = getenv("FLOW_DAMARIS_XML_FILE");
if (cs_damaris_xml_file != NULL)
{
std::cout << "INFO: Initializing Damaris from environment variable FLOW_DAMARIS_XML_FILE: "
<< cs_damaris_xml_file << std::endl;
dam_err_ = damaris_initialize(cs_damaris_xml_file, MPI_COMM_WORLD);
if (dam_err_ != DAMARIS_OK) {
OpmLog::info(std::string("Initializing Damaris from environment variable FLOW_DAMARIS_XML_FILE: ") + cs_damaris_xml_file);
dam_err = damaris_initialize(cs_damaris_xml_file, comm);
if (dam_err != DAMARIS_OK) {
OpmLog::error(fmt::format("ERORR: damariswriter::initializeDamaris() : ( rank:{}) "
"damaris_initialize({}, MPI_COMM_WORLD), Damaris Error: {} ",
mpiRank, cs_damaris_xml_file, damaris_error_string(dam_err_) ));
"damaris_initialize({}, comm), Damaris Error: {} ",
mpiRank, cs_damaris_xml_file, damaris_error_string(dam_err) ));
}
} else {
// Prepare the XML file
// Prepare the inbuilt XML file
std::string damaris_config_xml = initDamarisXmlFile(); // This is the template for a Damaris XML file
damaris::model::ModifyModel myMod = damaris::model::ModifyModel(damaris_config_xml);
// The map will make it precise the output directory and FileMode (either FilePerCore or Collective storage)
// The map file find all occurences of the string in position 1 and replace it/them with string in position 2
// std::map<std::string, std::string> find_replace_map = DamarisKeywords(outputDir, enableDamarisOutputCollective);
myMod.RepalceWithRegEx(find_replace_map);
std::string outputDir = find_replace_map["_PATH_REGEX_"] ;
std::string outputDir = find_replace_map["_PATH_REGEX_"];
std::string damaris_xml_filename_str = outputDir + "/damaris_config.xml";
if (mpiRank == 0) {
myMod.SaveXMLStringToFile(damaris_xml_filename_str);
}
std::cout << "INFO: Initializing Damaris using internally built file:" << damaris_xml_filename_str << " (N.B. use FLOW_DAMARIS_XML_FILE to override)" << std::endl;
dam_err_ = damaris_initialize(damaris_xml_filename_str.c_str(), comm);
if (dam_err_ != DAMARIS_OK) {
OpmLog::error(fmt::format("ERORR: damariswriter::initializeDamaris() : ( rank:{}) "
"damaris_initialize({}, MPI_COMM_WORLD), Damaris Error: {}. Error via OPM internally built file:",
mpiRank, cs_damaris_xml_file, damaris_error_string(dam_err_) ));
OpmLog::info("Initializing Damaris using internally built file: " + damaris_xml_filename_str + " (N.B. use environment variable FLOW_DAMARIS_XML_FILE to override)");
dam_err = damaris_initialize(damaris_xml_filename_str.c_str(), comm);
if (dam_err != DAMARIS_OK) {
OpmLog::error(fmt::format("damariswriter::initializeDamaris() : ( rank:{}) "
"damaris_initialize({}, comm), Damaris Error: {}. Error via OPM internally built file:",
mpiRank, cs_damaris_xml_file, damaris_error_string(dam_err) ));
}
}
}