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added: parallel support to HDF5File / HDF5Serializer

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This commit is contained in:
Arne Morten Kvarving
2023-02-09 23:30:02 +01:00
parent 0255bcebb1
commit 8c3400f562
10 changed files with 518 additions and 68 deletions
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53
tests/test_HDF5File.cpp
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@@ -24,6 +24,7 @@
#include <opm/simulators/utils/HDF5File.hpp>
#define BOOST_TEST_MODULE HDF5FileTest
#define BOOST_TEST_NO_MAIN
#include <boost/test/unit_test.hpp>
#include <filesystem>
@@ -36,13 +37,18 @@ BOOST_AUTO_TEST_CASE(ReadWrite)
auto path = std::filesystem::temp_directory_path() / Opm::unique_path("hdf5test%%%%%");
std::filesystem::create_directory(path);
auto rwpath = (path / "rw.hdf5").string();
#if HAVE_MPI
Parallel::Communication comm(MPI_COMM_SELF);
#else
Parallel::Communcation comm;
#endif
const std::vector<char> test_data{1,2,3,4,5,6,8,9};
{
Opm::HDF5File out_file(rwpath, Opm::HDF5File::OpenMode::OVERWRITE);
Opm::HDF5File out_file(rwpath, Opm::HDF5File::OpenMode::OVERWRITE, comm);
BOOST_CHECK_NO_THROW(out_file.write("/test_data", "d1", test_data));
}
{
Opm::HDF5File in_file(rwpath, Opm::HDF5File::OpenMode::READ);
Opm::HDF5File in_file(rwpath, Opm::HDF5File::OpenMode::READ, comm);
std::vector<char> data;
BOOST_CHECK_NO_THROW(in_file.read("/test_data", "d1", data));
BOOST_CHECK_EQUAL_COLLECTIONS(data.begin(), data.end(),
@@ -54,7 +60,12 @@ BOOST_AUTO_TEST_CASE(ReadWrite)
BOOST_AUTO_TEST_CASE(ThrowOpenNonexistent)
{
BOOST_CHECK_THROW(Opm::HDF5File out_file("no_such_file.hdf5", Opm::HDF5File::OpenMode::READ), std::runtime_error);
#if HAVE_MPI
Parallel::Communication comm(MPI_COMM_SELF);
#else
Parallel::Communcation comm;
#endif
BOOST_CHECK_THROW(Opm::HDF5File out_file("no_such_file.hdf5", Opm::HDF5File::OpenMode::READ, comm), std::runtime_error);
}
BOOST_AUTO_TEST_CASE(ReadNonExistentDset)
@@ -62,13 +73,18 @@ BOOST_AUTO_TEST_CASE(ReadNonExistentDset)
auto path = std::filesystem::temp_directory_path() / Opm::unique_path("hdf5test%%%%%");
std::filesystem::create_directory(path);
auto rwpath = (path / "existent_dset.hdf5").string();
#if HAVE_MPI
Parallel::Communication comm(MPI_COMM_SELF);
#else
Parallel::Communcation comm;
#endif
const std::vector<char> test_data{1,2,3,4,5,6,8,9};
{
Opm::HDF5File out_file(rwpath, Opm::HDF5File::OpenMode::OVERWRITE);
Opm::HDF5File out_file(rwpath, Opm::HDF5File::OpenMode::OVERWRITE, comm);
BOOST_CHECK_NO_THROW(out_file.write("/test_data", "d1", test_data));
}
{
Opm::HDF5File in_file(rwpath, Opm::HDF5File::OpenMode::READ);
Opm::HDF5File in_file(rwpath, Opm::HDF5File::OpenMode::READ, comm);
std::vector<char> data;
BOOST_CHECK_NO_THROW(in_file.read("/test_data", "d1", data));
BOOST_CHECK_EQUAL_COLLECTIONS(data.begin(), data.end(),
@@ -84,9 +100,14 @@ BOOST_AUTO_TEST_CASE(WriteExistentDset)
auto path = std::filesystem::temp_directory_path() / Opm::unique_path("hdf5test%%%%%");
std::filesystem::create_directory(path);
auto rwpath = (path / "existent_dset.hdf5").string();
#if HAVE_MPI
Parallel::Communication comm(MPI_COMM_SELF);
#else
Parallel::Communcation comm;
#endif
const std::vector<char> test_data{1,2,3,4,5,6,8,9};
{
Opm::HDF5File out_file(rwpath, Opm::HDF5File::OpenMode::OVERWRITE);
Opm::HDF5File out_file(rwpath, Opm::HDF5File::OpenMode::OVERWRITE, comm);
BOOST_CHECK_NO_THROW(out_file.write("/test_data", "d1", test_data));
BOOST_CHECK_THROW(out_file.write("/test_data", "d1", test_data), std::runtime_error);
}
@@ -99,15 +120,20 @@ BOOST_AUTO_TEST_CASE(List)
auto path = std::filesystem::temp_directory_path() / Opm::unique_path("hdf5test%%%%%");
std::filesystem::create_directory(path);
auto rwpath = (path / "existent_dset.hdf5").string();
#if HAVE_MPI
Parallel::Communication comm(MPI_COMM_SELF);
#else
Parallel::Communcation comm;
#endif
const std::vector<char> test_data{1,2,3,4,5,6,8,9};
{
Opm::HDF5File out_file(rwpath, Opm::HDF5File::OpenMode::OVERWRITE);
Opm::HDF5File out_file(rwpath, Opm::HDF5File::OpenMode::OVERWRITE, comm);
BOOST_CHECK_NO_THROW(out_file.write("/test_data", "d1", test_data));
BOOST_CHECK_NO_THROW(out_file.write("/test_data", "d2", test_data));
BOOST_CHECK_NO_THROW(out_file.write("/test_data/test", "d2", test_data));
}
{
Opm::HDF5File in_file(rwpath, Opm::HDF5File::OpenMode::READ);
Opm::HDF5File in_file(rwpath, Opm::HDF5File::OpenMode::READ, comm);
auto res1 = in_file.list("/");
BOOST_CHECK_EQUAL(res1.size(), 1u);
@@ -124,3 +150,14 @@ BOOST_AUTO_TEST_CASE(List)
std::filesystem::remove(rwpath);
std::filesystem::remove(path);
}
bool init_unit_test_func()
{
return true;
}
int main(int argc, char** argv)
{
Dune::MPIHelper::instance(argc, argv);
return boost::unit_test::unit_test_main(&init_unit_test_func, argc, argv);
}