OilfieldToolsNet/opm-simulators
4
0
Fork 0
mirror of https://github.com/OPM/opm-simulators.git synced 2025-01-04 13:36:57 -06:00
Code Issues Packages Projects Releases Wiki Activity

DamarisWriter: move setupDamarisPars to translation unit

Browse Source
This commit is contained in:
Arne Morten Kvarving 2024-01-31 09:28:18 +01:00
parent dc5bcc2e0b
commit 8e30d23655
2 changed files with 68 additions and 62 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

62
ebos/damariswriter.cc
View File

@ -27,11 +27,15 @@
#include <config.h>
#include <ebos/damariswriter.hh>
#include <opm/common/ErrorMacros.hpp>
#include <opm/common/OpmLog/OpmLog.hpp>
#include <Damaris.h>
#include <fmt/format.h>
#include <limits>
#include <stdexcept>
namespace Opm::DamarisOutput {
int setPosition(const char* field, int rank, int64_t pos)
@ -81,4 +85,62 @@ int endIteration(int rank)
return dam_err;
}
int setupWritingPars(Parallel::Communication comm,
const int n_elements_local_grid,
std::vector<unsigned long long>& elements_rank_offsets)
{
// one for each rank -- to be gathered from each client rank
std::vector<unsigned long long> elements_rank_sizes(comm.size());
// n_elements_local_grid should be the full model size
const unsigned long long n_elements_local = n_elements_local_grid;
// This gets the n_elements_local from all ranks and copies them to a std::vector of all the values on all ranks
// (elements_rank_sizes[]).
comm.allgather(&n_elements_local, 1, elements_rank_sizes.data());
elements_rank_offsets[0] = 0ULL;
// This scan makes the offsets to the start of each ranks grid section if each local grid data was concatenated (in
// rank order)
std::partial_sum(elements_rank_sizes.begin(),
std::prev(elements_rank_sizes.end()),
elements_rank_offsets.begin() + 1);
// find the global/total size
unsigned long long n_elements_global_max = elements_rank_offsets[comm.size() - 1];
n_elements_global_max += elements_rank_sizes[comm.size() - 1]; // add the last ranks size to the already accumulated offset values
if (comm.rank() == 0) {
OpmLog::debug(fmt::format("In setupDamarisWritingPars(): n_elements_global_max = {}",
n_elements_global_max));
}
// Set the paramater so that the Damaris servers can allocate the correct amount of memory for the variabe
// Damaris parameters only support int data types. This will limit models to be under size of 2^32-1 elements
// ToDo: Do we need to check that local ranks are 0 based ?
int dam_err = setParameter("n_elements_local", comm.rank(), elements_rank_sizes[comm.rank()]);
// Damaris parameters only support int data types. This will limit models to be under size of 2^32-1 elements
// ToDo: Do we need to check that n_elements_global_max will fit in a C int type (INT_MAX)
if( n_elements_global_max <= std::numeric_limits<int>::max() ) {
setParameter("n_elements_total", comm.rank(), n_elements_global_max);
} else {
OpmLog::error(fmt::format("( rank:{} ) The size of the global array ({}) is"
"greater than what a Damaris paramater type supports ({}). ",
comm.rank(), n_elements_global_max, std::numeric_limits<int>::max() ));
// assert( n_elements_global_max <= std::numeric_limits<int>::max() ) ;
OPM_THROW(std::runtime_error, "setupDamarisWritingPars() n_elements_global_max "
"> std::numeric_limits<int>::max() " + std::to_string(dam_err));
}
// Use damaris_set_position to set the offset in the global size of the array.
// This is used so that output functionality (e.g. HDF5Store) knows global offsets of the data of the ranks
setPosition("PRESSURE", comm.rank(), elements_rank_offsets[comm.rank()]);
dam_err = setPosition("GLOBAL_CELL_INDEX", comm.rank(), elements_rank_offsets[comm.rank()]);
// Set the size of the MPI variable
DamarisVar<int> mpi_rank_var(1, {"n_elements_local"}, "MPI_RANK", comm.rank());
mpi_rank_var.setDamarisPosition({static_cast<int64_t>(elements_rank_offsets[comm.rank()])});
return dam_err;
}
}

68
ebos/damariswriter.hh
View File

@ -48,11 +48,10 @@
#include <fmt/format.h>
#include <algorithm>
#include <limits>
#include <memory>
#include <numeric>
#include <stdexcept>
#include <string>
#include <vector>
namespace Opm {
@ -62,7 +61,9 @@ int endIteration(int rank);
int setParameter(const char* field, int rank, int value);
int setPosition(const char* field, int rank, int64_t pos);
int write(const char* field, int rank, const void* data);
int setupWritingPars(Parallel::Communication comm,
const int n_elements_local_grid,
std::vector<unsigned long long>& elements_rank_offsets);
}
/*!
@ -201,8 +202,8 @@ public:
// which define sizes of the Damaris variables, per-rank and globally (over all ranks).
// Also sets the offsets to where a ranks array data sits within the global array.
// This is usefull for HDF5 output and for defining distributed arrays in Dask.
dam_err_ = this->setupDamarisWritingPars(simulator_.vanguard().grid().comm(),
numElements_, elements_rank_offsets_);
dam_err_ = DamarisOutput::setupWritingPars(simulator_.vanguard().grid().comm(),
numElements_, elements_rank_offsets_);
// sets data for non-time-varying variables MPI_RANK and GLOBAL_CELL_INDEX
this->setGlobalIndexForDamaris() ;
@ -270,63 +271,6 @@ private:
std::fill(mpi_rank_var_test.data(), mpi_rank_var_test.data() + numElements_, rank_);
}
int setupDamarisWritingPars(Parallel::Communication comm,
const int n_elements_local_grid,
std::vector<unsigned long long>& elements_rank_offsets)
{
// one for each rank -- to be gathered from each client rank
std::vector<unsigned long long> elements_rank_sizes(comm.size());
// n_elements_local_grid should be the full model size
const unsigned long long n_elements_local = n_elements_local_grid;
// This gets the n_elements_local from all ranks and copies them to a std::vector of all the values on all ranks
// (elements_rank_sizes[]).
comm.allgather(&n_elements_local, 1, elements_rank_sizes.data());
elements_rank_offsets[0] = 0ULL;
// This scan makes the offsets to the start of each ranks grid section if each local grid data was concatenated (in
// rank order)
std::partial_sum(elements_rank_sizes.begin(),
std::prev(elements_rank_sizes.end()),
elements_rank_offsets.begin() + 1);
// find the global/total size
unsigned long long n_elements_global_max = elements_rank_offsets[comm.size() - 1];
n_elements_global_max += elements_rank_sizes[comm.size() - 1]; // add the last ranks size to the already accumulated offset values
if (comm.rank() == 0) {
OpmLog::debug(fmt::format("In setupDamarisWritingPars(): n_elements_global_max = {}",
n_elements_global_max));
}
// Set the paramater so that the Damaris servers can allocate the correct amount of memory for the variabe
// Damaris parameters only support int data types. This will limit models to be under size of 2^32-1 elements
// ToDo: Do we need to check that local ranks are 0 based ?
int dam_err = DamarisOutput::setParameter("n_elements_local", comm.rank(), elements_rank_sizes[comm.rank()]);
// Damaris parameters only support int data types. This will limit models to be under size of 2^32-1 elements
// ToDo: Do we need to check that n_elements_global_max will fit in a C int type (INT_MAX)
if( n_elements_global_max <= std::numeric_limits<int>::max() ) {
dam_err = DamarisOutput::setParameter("n_elements_total", comm.rank(), n_elements_global_max);
} else {
OpmLog::error(fmt::format("( rank:{} ) The size of the global array ({}) is"
"greater than what a Damaris paramater type supports ({}). ",
comm.rank(), n_elements_global_max, std::numeric_limits<int>::max() ));
// assert( n_elements_global_max <= std::numeric_limits<int>::max() ) ;
OPM_THROW(std::runtime_error, "setupDamarisWritingPars() n_elements_global_max > std::numeric_limits<int>::max() " + std::to_string(dam_err));
}
// Use damaris_set_position to set the offset in the global size of the array.
// This is used so that output functionality (e.g. HDF5Store) knows global offsets of the data of the ranks
dam_err = DamarisOutput::setPosition("PRESSURE", comm.rank(), elements_rank_offsets[comm.rank()]);
dam_err = DamarisOutput::setPosition("GLOBAL_CELL_INDEX", comm.rank(), elements_rank_offsets[comm.rank()]);
// Set the size of the MPI variable
DamarisVarInt mpi_rank_var(1, {"n_elements_local"}, "MPI_RANK", comm.rank()) ;
mpi_rank_var.setDamarisPosition({static_cast<int64_t>(elements_rank_offsets[comm.rank()])});
return dam_err;
}
void writeDamarisGridOutput()
{
const auto& gridView = simulator_.gridView();