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doc/handbook/dumux-handbook.tex
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@ -23,7 +23,7 @@
\DeclareGraphicsExtensions{.eps, .jpg}
\newcommand{\Dune}{{\sf\bfseries DUNE}}
\newcommand{\Dune}{{DUNE}\xspace}
\newcommand{\Dumux}{DuMu$^\text{x}$\xspace}
\newcommand{\doxyref}[3]{\textnormal{#1}}
\newenvironment{CompactList}

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doc/handbook/getting-started.tex
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@ -1,8 +1,6 @@
\chapter{Getting started}
We first describe the steps which are necessary for installing DuMu$^\text{x}$
and then provide a quick start guide for the first DuMu$^\text{x}$ experience.
We conclude this chapter with a copy of the DUNE coding guidelines.
First, we describe the steps which are necessary for installing \Dumux. Then a quick start guide for the first \Dumux experience is provided. We conclude this chapter with a copy of the \Dune coding guidelines.
\input{install}
\input{quickstart-guide}

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doc/handbook/install.tex
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@ -1,7 +1,7 @@
\section{Installation}
\label{install}
For the installation of DuMu$^\text{x}$, the following steps have to be performed.
For the installation of DuMu$^\text{x}$, the following steps have to be performed:
\paragraph{Checkout of the core modules}
From version 2.0 of DUNE, it was decided to stick to stable DUNE releases, comprising the core modules
@ -24,45 +24,46 @@ by
\begin{center}
\texttt{svn checkout https://svn.dune-project.org/svn/dune-grid-howto/releases/2.0 dune-grid-howto}
\end{center}
and work yourself through that tutorial in order to get an understanding of
the Dune grid interface.
and work yourself through that tutorial in order to get an understanding of the Dune grid interface.
\paragraph{Checkout of DuMu$^\text{x}$ and external modules}
If you obtained a \Dumux tarball, you should just extract the tarball as usual
and can skip this part. First of all, you need to ask one of the IWS system administrators to
add your account to the group \texttt{svndune}. \\
On the repository, the \Dumux project is divided into a stable and developers part, which should stay seperate
on the file system. If you are working on a LH2 computer, you then can checkout both parts of \Dumux
and the external modules via
\paragraph{Obtain \Dumux}
Two possibilities exist to obtain \Dumux. Either you register on the \Dumux website \cite{dumux-hp}, and download the tarball of a stable release, or
you checkout the (unstable) version from the \Dumux repository.
\paragraph{Download of the \Dumux tarball from the website}
The \Dumux tarball can be extracted as usual in the same folder, where you have performed the checkout of the DUNE modules. You can than skip the following paragraph.
\paragraph{Checkout of \Dumux from the SVN repository}
On the repository, the \Dumux project is divided into a stable and a developers part which should stay seperate
on the file system. You can checkout both parts of \Dumux via
\begin{itemize}
\item \texttt{svn checkout svn+ssh://luftig/home/svn/DUMUX/dumux/trunk dumux}
\item \texttt{svn checkout svn+ssh://luftig/home/svn/DUMUX/dune-mux/trunk dumux-dev}
\item \texttt{svn checkout svn+ssh://luftig/home/svn/DUMUX/external/trunk external}
\item \texttt{svn checkout --username=anonymous --password='' \\
\hspace{2cm} svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk dumux}
\item \texttt{svn checkout --username=anonymous --password='' \\
\hspace{2cm} svn://svn.iws.uni-stuttgart.de/DUMUX/dune-mux/trunk dumux-devel}
%\item \texttt{svn checkout svn+ssh://luftig/home/svn/DUMUX/external/trunk external}
\end{itemize}
If you want to checkout from outside LH2, you first need to establish a tunnel.
To this end, you need to add once
\begin{center}
\texttt{ssht = ssh -p 2022 -l login -o HostKeyAlias=luftig.iws.uni-stuttgart.de}
\end{center}
with \texttt{login} replaced
by your actual IWS login name, to the section \texttt{[tunnels]} of the
file \texttt{\$HOME/} \texttt{.subversion/config},
The tunnel then needs to be initialized every time you want
to connect to the repository by
\begin{center}
\texttt{ssh -Nf -L 2022:luftig.iws.uni-stuttgart.de:22 login@login1.iws.uni-stuttgart.de}.
\end{center}
Then, you can checkout everything as described above, if you replace \texttt{luftig}
by \texttt{localhost}.
The repositories allow a read-only access. If you also want to commit new developments to the repositories, you can ask one of the LH$^2$ administrators to add you to the svn group ( \texttt{svndune}).
%Moreover, the possibility to checkout a read-only version from outside exists. Therefor, no IWS-account is needed. The following commands can be used for an anonymous checkout:
%\begin{itemize}
%\item \texttt{svn checkout svn://svn.iws.uni-stuttgart.de/DUMUX/dune-mux/trunk dumux}
%\item \texttt{svn checkout svn://svn.iws.uni-stuttgart.de/DUMUX/external/trunk external}
%\item \texttt{svn checkout svn://svn.iws.uni-stuttgart.de/DUMUX/dune-subgrid/trunk dune-subgrid}
%\end{itemize}
\paragraph{Required external modules}
Among others, the following modules provide additional functionality, but are not required to run \Dumux:
\begin{itemize}
\item grids: Alberta, AluGrid, UG
\item solvers: Pardiso, SuperLU
\item BLAS and METIS library
\end{itemize}
If you are working on a LH$^2$ computer, you can checkout a set of external modules via \\
\texttt{svn checkout svn+ssh://luftig/home/svn/DUMUX/external/trunk external}. \\
To install them all, execute the install script in the folder \texttt{external}:
\begin{center}
\texttt{./installExternal.sh all}
\end{center}
If you like to only install some of the external software, you can choose one of the
corresponding options instead of \texttt{all}: \texttt{alberta, alu, blas, metis, ug}.
Please also refer to the DUNE webpage for additional details, \cite{DUNE-HP}.
\paragraph{Installation on a not-IWS PC}
\paragraph{Installation on a non-IWS PC}
If \Dumux is not to be used on a PC maintained by LH$^2$ it is probable that one needs to install additional software.
Here is a (hopefully complete) list of packages that needed to be installed on a fresh ubuntu 10.04 in order to get \verb+dunecontrol+ running.
\begin{itemize}
@ -80,7 +81,7 @@ Here is a (hopefully complete) list of packages that needed to be installed on
\paragraph{Build the external modules}
If you obtained a \Dumux tarball, you should skip this part.
If you obtained a \Dumux tarball, you can skip this part.
\begin{turn}{45}\textbf{Attenschion}\end{turn}
\begin{turn}{45}\textbf{Attenschion}\end{turn}
@ -105,21 +106,21 @@ Also, the gcc version 4.3 is hard coded into the skript. }
\begin{turn}{45}\textbf{Attenschion}\end{turn}
The external modules have to be built first. They consist of Alberta, ALUGrid, UG, and METIS.
To install them all, execute the install script in the folder \texttt{external}:
\begin{center}
\texttt{./installExternal.sh all}
\end{center}
If you like to only install some of the external software, you can choose one of the
corresponding options instead of \texttt{all}: \texttt{alberta, alu, metis, ug}.
Please also refer to the DUNE webpage for additional details, \cite{DUNE-HP}.
\paragraph{Build DUNE and DuMu$^\text{x}$}
\paragraph{Build \Dune and \Dumux}
\label{buildIt}
Type in the folder \texttt{DUMUX}:
If you want to compile in the debugging mode, type in the folder \texttt{DUMUX}:
\begin{center}
\texttt{./dune-common/bin/dunecontrol --opts=\$DUMUX\_ROOT/debug.opts all}
\end{center}
This uses the DUNE buildsystem. If it does not work, please consider
Otherwise you can type
\begin{center}
\texttt{./dune-common/bin/dunecontrol --opts=\$DUMUX\_ROOT/optim.opts all}
\end{center}
in order to get an optimized compilation (better performance, but no possibility to use a debugger).
This uses the DUNE buildsystem. If it does not work, please have a look at
the file \texttt{INSTALL} in the \Dumux root directory (if you use
SVN, this \texttt{\$DUMUX\_ROOT} is usually \texttt{dumux}, if you use
a released version it is usually \texttt{dumux-VERSION}). You can also