Merge pull request #646 from atgeirr/import-sim

Import simulator, update code

CMakeLists_files.cmake

@@ -101,6 +101,7 @@ list (APPEND EXAMPLE_SOURCE_FILES
   examples/flow.cpp
   examples/flow_multisegment.cpp
   examples/flow_solvent.cpp
+  examples/sim_2p_incomp.cpp
   examples/sim_2p_incomp_ad.cpp
   examples/sim_2p_comp_reorder.cpp
   examples/sim_simple.cpp
@@ -114,7 +115,9 @@ list (APPEND EXAMPLE_SOURCE_FILES
 # programs listed here will not only be compiled, but also marked for
 # installation
 list (APPEND PROGRAM_SOURCE_FILES
+  examples/sim_2p_incomp.cpp
   examples/sim_2p_incomp_ad.cpp
+  examples/sim_2p_comp_reorder.cpp
   examples/flow.cpp
   examples/flow_solvent.cpp
   examples/opm_init_check.cpp
@@ -217,5 +220,7 @@ list (APPEND PUBLIC_HEADER_FILES
   opm/polymer/fullyimplicit/SimulatorFullyImplicitBlackoilPolymer.hpp
   opm/polymer/fullyimplicit/SimulatorFullyImplicitBlackoilPolymer_impl.hpp
   opm/polymer/fullyimplicit/WellStateFullyImplicitBlackoilPolymer.hpp
+  opm/simulators/SimulatorCompressibleTwophase.hpp
+  opm/simulators/SimulatorIncompTwophase.hpp
   )
 

examples/sim_2p_comp_reorder.cpp

@@ -43,7 +43,7 @@
 
 #include <opm/core/simulator/BlackoilState.hpp>
 #include <opm/core/simulator/WellState.hpp>
-#include <opm/core/simulator/SimulatorCompressibleTwophase.hpp>
+#include <opm/simulators/SimulatorCompressibleTwophase.hpp>
 
 #include <opm/parser/eclipse/Parser/Parser.hpp>
 #include <opm/parser/eclipse/Parser/ParseContext.hpp>

examples/sim_2p_incomp.cpp

@@ -0,0 +1,320 @@
+/*
+  Copyright 2012 SINTEF ICT, Applied Mathematics.
+
+  This file is part of the Open Porous Media project (OPM).
+
+  OPM is free software: you can redistribute it and/or modify
+  it under the terms of the GNU General Public License as published by
+  the Free Software Foundation, either version 3 of the License, or
+  (at your option) any later version.
+
+  OPM is distributed in the hope that it will be useful,
+  but WITHOUT ANY WARRANTY; without even the implied warranty of
+  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+  GNU General Public License for more details.
+
+  You should have received a copy of the GNU General Public License
+  along with OPM.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+
+#if HAVE_CONFIG_H
+#include "config.h"
+#endif // HAVE_CONFIG_H
+
+#include <opm/core/pressure/FlowBCManager.hpp>
+
+#include <opm/core/grid.h>
+#include <opm/core/grid/GridManager.hpp>
+#include <opm/core/wells.h>
+#include <opm/core/wells/WellsManager.hpp>
+#include <opm/common/ErrorMacros.hpp>
+#include <opm/core/simulator/initState.hpp>
+#include <opm/core/simulator/SimulatorReport.hpp>
+#include <opm/core/simulator/SimulatorTimer.hpp>
+#include <opm/core/utility/miscUtilities.hpp>
+#include <opm/core/utility/parameters/ParameterGroup.hpp>
+
+#include <opm/core/props/IncompPropertiesBasic.hpp>
+#include <opm/core/props/IncompPropertiesFromDeck.hpp>
+#include <opm/core/props/rock/RockCompressibility.hpp>
+
+#include <opm/core/linalg/LinearSolverFactory.hpp>
+
+#include <opm/core/simulator/TwophaseState.hpp>
+#include <opm/core/simulator/WellState.hpp>
+#include <opm/simulators/SimulatorIncompTwophase.hpp>
+
+#include <opm/parser/eclipse/Parser/ParseContext.hpp>
+#include <opm/parser/eclipse/Parser/Parser.hpp>
+#include <opm/parser/eclipse/EclipseState/EclipseState.hpp>
+
+
+#include <memory>
+#include <boost/filesystem.hpp>
+
+#include <algorithm>
+#include <iostream>
+#include <vector>
+#include <numeric>
+
+
+namespace
+{
+    void warnIfUnusedParams(const Opm::parameter::ParameterGroup& param)
+    {
+        if (param.anyUnused()) {
+            std::cout << "--------------------   Unused parameters:   --------------------\n";
+            param.displayUsage();
+            std::cout << "----------------------------------------------------------------" << std::endl;
+        }
+    }
+} // anon namespace
+
+
+
+// ----------------- Main program -----------------
+int
+main(int argc, char** argv)
+try
+{
+    using namespace Opm;
+
+    std::cout << "\n================    Test program for incompressible two-phase flow     ===============\n\n";
+    parameter::ParameterGroup param(argc, argv, false);
+    std::cout << "---------------    Reading parameters     ---------------" << std::endl;
+
+#if ! HAVE_SUITESPARSE_UMFPACK_H
+    // This is an extra check to intercept a potentially invalid request for the
+    // implicit transport solver as early as possible for the user.
+    {
+        const bool use_reorder = param.getDefault("use_reorder", true);
+        if (!use_reorder) {
+            OPM_THROW(std::runtime_error, "Cannot use implicit transport solver without UMFPACK. "
+                  "Either reconfigure opm-core with SuiteSparse/UMFPACK support and recompile, "
+                  "or use the reordering solver (use_reorder=true).");
+        }
+    }
+#endif
+
+    // If we have a "deck_filename", grid and props will be read from that.
+    bool use_deck = param.has("deck_filename");
+    EclipseStateConstPtr eclipseState;
+
+    Opm::DeckConstPtr deck;
+    std::unique_ptr<GridManager> grid;
+    std::unique_ptr<IncompPropertiesInterface> props;
+    std::unique_ptr<RockCompressibility> rock_comp;
+    std::unique_ptr<TwophaseState> state;
+    // bool check_well_controls = false;
+    // int max_well_control_iterations = 0;
+    double gravity[3] = { 0.0 };
+    if (use_deck) {
+        ParserPtr parser(new Opm::Parser());
+        ParseContext parseContext;
+
+        std::string deck_filename = param.get<std::string>("deck_filename");
+        deck = parser->parseFile(deck_filename , parseContext);
+        eclipseState.reset( new EclipseState(deck, parseContext));
+        // Grid init
+        grid.reset(new GridManager(deck));
+        {
+            const UnstructuredGrid& ug_grid = *(grid->c_grid());
+            // Rock and fluid init
+            props.reset(new IncompPropertiesFromDeck(deck, eclipseState, ug_grid));
+
+            state.reset( new TwophaseState(  UgGridHelpers::numCells( ug_grid ) , UgGridHelpers::numFaces( ug_grid )));
+
+            // Rock compressibility.
+            rock_comp.reset(new RockCompressibility(deck, eclipseState));
+            // Gravity.
+            gravity[2] = deck->hasKeyword("NOGRAV") ? 0.0 : unit::gravity;
+            // Init state variables (saturation and pressure).
+            if (param.has("init_saturation")) {
+                initStateBasic(ug_grid, *props, param, gravity[2], *state);
+            } else {
+                initStateFromDeck(ug_grid, *props, deck, gravity[2], *state);
+            }
+        }
+    } else {
+        // Grid init.
+        const int nx = param.getDefault("nx", 100);
+        const int ny = param.getDefault("ny", 100);
+        const int nz = param.getDefault("nz", 1);
+        const double dx = param.getDefault("dx", 1.0);
+        const double dy = param.getDefault("dy", 1.0);
+        const double dz = param.getDefault("dz", 1.0);
+        grid.reset(new GridManager(nx, ny, nz, dx, dy, dz));
+        {
+            const UnstructuredGrid& ug_grid = *(grid->c_grid());
+
+            // Rock and fluid init.
+            props.reset(new IncompPropertiesBasic(param, ug_grid.dimensions, UgGridHelpers::numCells( ug_grid )));
+
+            state.reset( new TwophaseState(  UgGridHelpers::numCells( ug_grid ) , UgGridHelpers::numFaces( ug_grid )));
+            // Rock compressibility.
+            rock_comp.reset(new RockCompressibility(param));
+            // Gravity.
+            gravity[2] = param.getDefault("gravity", 0.0);
+            // Init state variables (saturation and pressure).
+            initStateBasic(ug_grid, *props, param, gravity[2], *state);
+        }
+    }
+
+    // Warn if gravity but no density difference.
+    bool use_gravity = (gravity[0] != 0.0 || gravity[1] != 0.0 || gravity[2] != 0.0);
+    if (use_gravity) {
+        if (props->density()[0] == props->density()[1]) {
+            std::cout << "**** Warning: nonzero gravity, but zero density difference." << std::endl;
+        }
+    }
+    const double *grav = use_gravity ? &gravity[0] : 0;
+
+    // Initialising src
+    int num_cells = grid->c_grid()->number_of_cells;
+    std::vector<double> src(num_cells, 0.0);
+    if (use_deck) {
+        // Do nothing, wells will be the driving force, not source terms.
+    } else {
+        // Compute pore volumes, in order to enable specifying injection rate
+        // terms of total pore volume.
+        std::vector<double> porevol;
+        if (rock_comp->isActive()) {
+            computePorevolume(*grid->c_grid(), props->porosity(), *rock_comp, state->pressure(), porevol);
+        } else {
+            computePorevolume(*grid->c_grid(), props->porosity(), porevol);
+        }
+        const double tot_porevol_init = std::accumulate(porevol.begin(), porevol.end(), 0.0);
+        const double default_injection = use_gravity ? 0.0 : 0.1;
+        const double flow_per_sec = param.getDefault<double>("injected_porevolumes_per_day", default_injection)
+            *tot_porevol_init/unit::day;
+        src[0] = flow_per_sec;
+        src[num_cells - 1] = -flow_per_sec;
+    }
+
+    // Boundary conditions.
+    FlowBCManager bcs;
+    if (param.getDefault("use_pside", false)) {
+        int pside = param.get<int>("pside");
+        double pside_pressure = param.get<double>("pside_pressure");
+        bcs.pressureSide(*grid->c_grid(), FlowBCManager::Side(pside), pside_pressure);
+    }
+
+    // Linear solver.
+    LinearSolverFactory linsolver(param);
+
+    // Write parameters used for later reference.
+    bool output = param.getDefault("output", true);
+    std::ofstream epoch_os;
+    std::string output_dir;
+    if (output) {
+        output_dir =
+            param.getDefault("output_dir", std::string("output"));
+        boost::filesystem::path fpath(output_dir);
+        try {
+            create_directories(fpath);
+        }
+        catch (...) {
+            OPM_THROW(std::runtime_error, "Creating directories failed: " << fpath);
+        }
+        std::string filename = output_dir + "/epoch_timing.param";
+        epoch_os.open(filename.c_str(), std::fstream::trunc | std::fstream::out);
+        // open file to clean it. The file is appended to in SimulatorTwophase
+        filename = output_dir + "/step_timing.param";
+        std::fstream step_os(filename.c_str(), std::fstream::trunc | std::fstream::out);
+        step_os.close();
+        param.writeParam(output_dir + "/simulation.param");
+    }
+
+    SimulatorReport rep;
+    if (!use_deck) {
+        std::cout << "\n\n================    Starting main simulation loop     ===============\n"
+                  << "                        (number of report steps: 1)\n\n" << std::flush;
+        // Simple simulation without a deck.
+        WellsManager wells; // no wells.
+        SimulatorIncompTwophase simulator(param,
+                                          *grid->c_grid(),
+                                          *props,
+                                          rock_comp->isActive() ? rock_comp.get() : 0,
+                                          wells,
+                                          src,
+                                          bcs.c_bcs(),
+                                          linsolver,
+                                          grav);
+        SimulatorTimer simtimer;
+        simtimer.init(param);
+        warnIfUnusedParams(param);
+        WellState well_state;
+        well_state.init(0, *state);
+        rep = simulator.run(simtimer, *state, well_state);
+    } else {
+        // With a deck, we may have more epochs etc.
+        Opm::TimeMapConstPtr timeMap = eclipseState->getSchedule()->getTimeMap();
+
+        std::cout << "\n\n================    Starting main simulation loop     ===============\n"
+                  << "                        (number of report steps: "
+                  << timeMap->numTimesteps() << ")\n\n" << std::flush;
+        WellState well_state;
+        int step = 0;
+        SimulatorTimer simtimer;
+        // Use timer for last epoch to obtain total time.
+        simtimer.init(timeMap);
+        const double total_time = simtimer.totalTime();
+        // for (size_t reportStepIdx = 0; reportStepIdx < timeMap->numTimesteps(); ++reportStepIdx) {
+        size_t reportStepIdx = 0; // Only handle a single, unchanging well setup.
+        {
+            // Update the timer.
+            simtimer.setCurrentStepNum(step);
+            simtimer.setTotalTime(total_time);
+
+            // Report on start of report step.
+            // std::cout << "\n\n--------------    Starting report step " << reportStepIdx << "    --------------"
+            //           << "\n                  (number of time steps: "
+            //           << simtimer.numSteps() - step << ")\n\n" << std::flush;
+
+            // Create new wells, well_state
+            WellsManager wells(eclipseState , reportStepIdx , *grid->c_grid(), props->permeability());
+            // @@@ HACK: we should really make a new well state and
+            // properly transfer old well state to it every report step,
+            // since number of wells may change etc.
+            if (reportStepIdx == 0) {
+                well_state.init(wells.c_wells(), *state);
+            }
+
+            // Create and run simulator.
+            SimulatorIncompTwophase simulator(param,
+                                              *grid->c_grid(),
+                                              *props,
+                                              rock_comp->isActive() ? rock_comp.get() : 0,
+                                              wells,
+                                              src,
+                                              bcs.c_bcs(),
+                                              linsolver,
+                                              grav);
+            if (reportStepIdx == 0) {
+                warnIfUnusedParams(param);
+            }
+            SimulatorReport epoch_rep = simulator.run(simtimer, *state, well_state);
+            if (output) {
+                epoch_rep.reportParam(epoch_os);
+            }
+            // Update total timing report and remember step number.
+            rep += epoch_rep;
+            step = simtimer.currentStepNum();
+        }
+    }
+
+    std::cout << "\n\n================    End of simulation     ===============\n\n";
+    rep.report(std::cout);
+
+    if (output) {
+      std::string filename = output_dir + "/walltime.param";
+      std::fstream tot_os(filename.c_str(),std::fstream::trunc | std::fstream::out);
+      rep.reportParam(tot_os);
+    }
+
+}
+catch (const std::exception &e) {
+    std::cerr << "Program threw an exception: " << e.what() << "\n";
+    throw;
+}

opm/autodiff/FlowMain.hpp

@@ -50,7 +50,7 @@
 #include <opm/core/simulator/SimulatorTimer.hpp>
 #include <opm/core/utility/miscUtilities.hpp>
 #include <opm/core/utility/parameters/ParameterGroup.hpp>
-#include <opm/core/utility/thresholdPressures.hpp> // Note: the GridHelpers must be included before this (to make overloads available). \TODO: Fix.
+#include <opm/simulators/thresholdPressures.hpp> // Note: the GridHelpers must be included before this (to make overloads available). \TODO: Fix.
 
 #include <opm/material/fluidmatrixinteractions/EclMaterialLawManager.hpp>
 #include <opm/core/props/BlackoilPropertiesBasic.hpp>

opm/simulators/SimulatorCompressibleTwophase.cpp

@@ -21,7 +21,7 @@
 #include "config.h"
 #endif // HAVE_CONFIG_H
 
-#include <opm/core/simulator/SimulatorCompressibleTwophase.hpp>
+#include <opm/simulators/SimulatorCompressibleTwophase.hpp>
 #include <opm/core/utility/parameters/ParameterGroup.hpp>
 #include <opm/common/ErrorMacros.hpp>
 

opm/simulators/SimulatorIncompTwophase.cpp

@@ -21,7 +21,7 @@
 #include "config.h"
 #endif // HAVE_CONFIG_H
 
-#include <opm/core/simulator/SimulatorIncompTwophase.hpp>
+#include <opm/simulators/SimulatorIncompTwophase.hpp>
 #include <opm/core/utility/NullStream.hpp>
 #include <opm/core/utility/parameters/ParameterGroup.hpp>
 #include <opm/common/ErrorMacros.hpp>

opm/simulators/thresholdPressures.hpp

@@ -55,8 +55,8 @@ void computeMaxDp(std::map<std::pair<int, int>, double>& maxDp,
 
     const PhaseUsage& pu = props.phaseUsage();
 
-    std::shared_ptr<const GridProperty<int>> eqlnum = eclipseState->getIntGridProperty("EQLNUM");
+    const auto& eqlnum = eclipseState->get3DProperties().getIntGridProperty("EQLNUM");
-    const auto& eqlnumData = eqlnum->getData();
+    const auto& eqlnumData = eqlnum.getData();
 
     const int numPhases = initialState.numPhases();
     const int numCells = UgGridHelpers::numCells(grid);
@@ -100,7 +100,7 @@ void computeMaxDp(std::map<std::pair<int, int>, double>& maxDp,
     // Fortran indices.
     const int* gc = UgGridHelpers::globalCell(grid);
     std::vector<int> pvtRegion(numCells);
-    const auto& cartPvtRegion = eclipseState->getIntGridProperty("PVTNUM")->getData();
+    const auto& cartPvtRegion = eclipseState->get3DProperties().getIntGridProperty("PVTNUM").getData();
     for (int cellIdx = 0; cellIdx < numCells; ++cellIdx) {
         const int cartCellIdx = gc ? gc[cellIdx] : cellIdx;
         pvtRegion[cellIdx] = std::max(0, cartPvtRegion[cartCellIdx] - 1);
@@ -323,8 +323,8 @@ void computeMaxDp(std::map<std::pair<int, int>, double>& maxDp,
         std::vector<double> thpres_vals;
         if (simulationConfig->hasThresholdPressure()) {
             std::shared_ptr<const ThresholdPressure> thresholdPressure = simulationConfig->getThresholdPressure();
-            std::shared_ptr<const GridProperty<int>> eqlnum = eclipseState->getIntGridProperty("EQLNUM");
+            const auto& eqlnum = eclipseState->get3DProperties().getIntGridProperty("EQLNUM");
-            const auto& eqlnumData = eqlnum->getData();
+            const auto& eqlnumData = eqlnum.getData();
 
             // Set threshold pressure values for each cell face.
             const int num_faces = UgGridHelpers::numFaces(grid);
@@ -381,8 +381,8 @@ void computeMaxDp(std::map<std::pair<int, int>, double>& maxDp,
         std::vector<double> thpres_vals;
         if (simulationConfig->hasThresholdPressure()) {
             std::shared_ptr<const ThresholdPressure> thresholdPressure = simulationConfig->getThresholdPressure();
-            std::shared_ptr<const GridProperty<int>> eqlnum = eclipseState->getIntGridProperty("EQLNUM");
+            const auto& eqlnum = eclipseState->get3DProperties().getIntGridProperty("EQLNUM");
-            auto eqlnumData = eqlnum->getData();
+            const auto& eqlnumData = eqlnum.getData();
 
             // Set values for each NNC