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71 Commits

Author SHA1 Message Date
Arne Morten Kvarving
b55cc972c2
Merge pull request #5459 from OPM/dependabot/pip/python/sphinx_docs/requests-2.32.2 
Bump requests from 2.31.0 to 2.32.2 in /python/sphinx_docs
 2024-07-01 13:40:48 +02:00
Arne Morten Kvarving
ae6e58a468
Merge pull request #5458 from OPM/dependabot/pip/python/sphinx_docs/idna-3.7 
Bump idna from 3.6 to 3.7 in /python/sphinx_docs
 2024-07-01 13:40:24 +02:00
Arne Morten Kvarving
1f92effa27
Merge pull request #5456 from OPM/dependabot/pip/python/sphinx_docs/jinja2-3.1.4 
Bump jinja2 from 3.1.3 to 3.1.4 in /python/sphinx_docs
 2024-07-01 13:39:57 +02:00
dependabot[bot]
027818b09a
Bump requests from 2.31.0 to 2.32.2 in /python/sphinx_docs 
Bumps [requests](https://github.com/psf/requests) from 2.31.0 to 2.32.2.
- [Release notes](https://github.com/psf/requests/releases)
- [Changelog](https://github.com/psf/requests/blob/main/HISTORY.md)
- [Commits](https://github.com/psf/requests/compare/v2.31.0...v2.32.2)

---
updated-dependencies:
- dependency-name: requests
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
 2024-07-01 11:36:22 +00:00
dependabot[bot]
ccb85f17e0
Bump idna from 3.6 to 3.7 in /python/sphinx_docs 
Bumps [idna](https://github.com/kjd/idna) from 3.6 to 3.7.
- [Release notes](https://github.com/kjd/idna/releases)
- [Changelog](https://github.com/kjd/idna/blob/master/HISTORY.rst)
- [Commits](https://github.com/kjd/idna/compare/v3.6...v3.7)

---
updated-dependencies:
- dependency-name: idna
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
 2024-07-01 11:36:18 +00:00
dependabot[bot]
fe1e86bf5c
Bump jinja2 from 3.1.3 to 3.1.4 in /python/sphinx_docs 
Bumps [jinja2](https://github.com/pallets/jinja) from 3.1.3 to 3.1.4.
- [Release notes](https://github.com/pallets/jinja/releases)
- [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst)
- [Commits](https://github.com/pallets/jinja/compare/3.1.3...3.1.4)

---
updated-dependencies:
- dependency-name: jinja2
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
 2024-07-01 11:36:17 +00:00
dependabot[bot]
e946bfe55b
Bump urllib3 from 2.2.1 to 2.2.2 in /python/sphinx_docs 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.2.1 to 2.2.2.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.2.1...2.2.2)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
 2024-07-01 11:36:17 +00:00
Arne Morten Kvarving
5d3f4115f2
Merge pull request #5243 from hakonhagland/sphinx_gha 
Add sphinx documentation for Python bindings and GitHub action workflow to push to GitHub pages
 2024-07-01 13:35:19 +02:00
Kai Bao
027c3ba0fc using one day time step for SPE1CASE1a/SPE1CASE1.DATA 
to avoid time stepping change causes test failures for the python tests
 2024-06-19 13:42:55 +02:00
Håkon Hægland
a6c28ea85a Use the module sphinx-versioned-docs 
Use the Python module sphinx-versioned-docs to get versioned docs.
Currently, there is only a version for the HEAD of the master branch
but release versions can be added later by specifying a release tag.
 2024-05-14 09:00:58 +02:00
Håkon Hægland
34f93e2198 Dynamically extract sphinx documentation release version. 
Dynamically extract sphinx documentation release version from
dune.module version.
 2024-05-14 09:00:58 +02:00
Håkon Hægland
566a844fef Added sphinx documentation for Python bindings 
Added sphinx documentation for the opm.simulators.BlackOilSimulator
Python module. Added GitHub action workflow to deploy sphinx
documentation to GitHub Pages.
 2024-05-14 09:00:52 +02:00
Håkon Hægland
6c3f3af4b4 Docstring fixes 2024-05-02 11:24:58 +02:00
Håkon Hægland
a1b7d4b5dd Allow Python bindings to setup MPI 
Allows the Python bindings to control whether MPI_Init() and
MPI_Finalize() will be called when creating an OPM::Main object.
 2024-05-02 11:14:07 +02:00
Arne Morten Kvarving
3475da7d8c Rename ebos_simulator members/parameters to simulator 2024-03-06 10:53:00 +01:00
Arne Morten Kvarving
d5748b6c55 Drop ebos in function names 2024-03-06 10:13:01 +01:00
Håkon Hægland
8cbb1707e7 Move statements to after target is defined 2024-03-05 11:11:53 +01:00
Håkon Hægland
1c5143f02e Improve CMakeLists.txt 
Add the generated .hpp file directly to pybind11 sources instead of
creating a custom target.
 2024-03-05 10:48:04 +01:00
Håkon Hægland
e20faa255c Add docstrings for Python bindings 2024-03-05 10:18:54 +01:00
Håkon Hægland
757c67f284 Return vectors by value 
Return vectors by value instead of unique pointers to arrays.
 2024-03-01 14:22:37 +01:00
Håkon Hægland
55aab60549 Get primary variables and fluid state from Python 
Added methods to Python module opm.simulators.BlackOilSimulator to
access primary variables and fluid state variables.
 2024-03-01 14:22:35 +01:00
Arne Morten Kvarving
f8b22631b0 fixed: don't link python module to flow_libblackoil 
this leads to ODR violations which causes all sorts
of havoc. this was done to reuse a trivial method,
duplicate it in the python source instead.
 2024-02-29 09:24:07 +01:00
Arne Morten Kvarving
4aa6dc355f rename TTag::EclFlowProblemTPFA to TTag::FlowProblemTPFA 2024-02-23 09:27:48 +01:00
Arne Morten Kvarving
b09c70213b FlowMainEbos: rename to FlowMain 2024-02-06 10:42:23 +01:00
Arne Morten Kvarving
9c38f01997 changed: vendor pybind11 using FetchContent 2023-11-16 10:02:04 +01:00
Tor Harald Sandve
968686e7e0
Merge pull request #4943 from hakonhagland/pybind3 
Get simulator time step size from Python BlackOilSimulator module
 2023-10-26 11:28:42 +02:00
Tor Harald Sandve
922fa5b9bf
Merge pull request #4853 from hakonhagland/pybind2 
Get cell volumes from Python
 2023-10-24 13:56:58 +02:00
Håkon Hægland
8849c7d357 Removed reference to unit system 
The unit system is not used in this example, so we can remove it.
 2023-09-25 11:01:12 +02:00
Håkon Hægland
9778929a81 Added some Python documentation 2023-09-25 10:18:13 +02:00
Håkon Hægland
ac927d997b Added a get_dt() method 
Added a get_dt() to the opm.simulators.BlackOilSimulator Python module.
This will return the size of the previous simulator time step.
 2023-09-08 19:40:42 +02:00
Håkon Hægland
e2f62644ae Get cell volumes from Python 
Adds a new method get_cell_volumes() to the opm.simulators Python module
that returns a python list of the cell volumes in the black oil
simulator.
 2023-09-08 09:39:24 +02:00
Arne Morten Kvarving
c7016854d9 changed: make the deck an implementation detail in Opm::readDeck 2022-11-24 13:00:38 +01:00
Atgeirr Flø Rasmussen
a7a5a7a98d Make the Python interface use the TpfaLinearizer. 2022-10-04 11:44:35 +02:00
Markus Blatt
02666a6677 Use CMake's find_file to find install.py for Python installation. 
This seems to be a more stable approach as it does not produce
```
/usr/bin/python3.9: can't open file
'/home/mblatt/src/dune/opm-2.9/opm-common//install.py': [Errno 2] No such file or directory
```
for rebuilds after failed attempts.
 2022-09-30 18:05:40 +02:00
Håkon Hægland
8e3ce1aed9 Only copy necessary files from python folder 
Instead of copying the whole python folder, only copy the necessary files to
the build directory. This means the opm, test, and test_data directories.
 2022-06-10 12:19:24 +02:00
Håkon Hægland
8af152dcff Make Python opm package a namespace package 
Convert the Python opm package from a regular package to a namespace
package such that opm-simulators and opm-common can contribute to the
package from different filesystem paths. In this way, the two packages
opm.simulators and opm.io (in opm-common) can have a different parent
filesystem path.
 2022-06-10 11:37:15 +02:00
Håkon Hægland
19b074805d Use the new opm-common_PYTHON_COMMON_DIR 
Use the new opm-common_PYTHON_COMMON_DIR to locate the install.py
script if we are building against an installed opm-common.
 2022-06-10 11:31:48 +02:00
Håkon Hægland
9b0c63b325 Also use installed install.py for copy_python 
Also use the installed install.py when copying python files at build time
 2022-06-10 11:31:48 +02:00
Håkon Hægland
696f830eab Use installed install.py 
If we are building against an installed opm-common, use the installed
install.py script instead
 2022-06-10 11:31:48 +02:00
Håkon Hægland
063e336ec6 Remove SYSTEM argument for cmake >= 3.12 
Remove SYSTEM argument for pybind11_add_module() if cmake version is
greater than 3.12. It appears that this argument has been deprecated
and also removed by the new FindPython mode in the cmake tools for
pybind11.
 2022-06-10 11:31:48 +02:00
Håkon Hægland
3c0498e55f Dynamically update schedule from Python 
Adds some test cases that show how injection properties in Opm::Schedule
can be dynamically modified from Python.
 2022-06-10 11:31:48 +02:00
Håkon Hægland
91ac3a2a32 Dynamically update schedule from Python 
Adds some methods that enables Opm::Schedule to be dynamically modified
from Python. A test case in test_schedule.py illustrates the use case.
 2022-05-05 13:10:39 +02:00
Markus Blatt
5c29a3c3e7 Make determining whether to use dist-packages more bullet proof. 
Seems like getsitepackages is not always implemented.
 2022-03-22 12:06:23 +01:00
Markus Blatt
17ca01b607 [python] Make sure Python files are installed similar to opm-common. 
Instead of always using site-packages we query the sitepackages path
from Python. If it matches dist-packages then we use dist-packages if
we install below /usr, otherwise site-packages is used.

This will also make sure that the Python files end up in the same
location as for the ones of opm-common. This should make using them
easier.
 2022-03-22 12:06:12 +01:00
Joakim Hove
6b92443cb4 Downstream filesystem reorganisation in opm-common 2022-01-02 14:33:34 +01:00
Arne Morten Kvarving
7f7fbab2f4 remove FLOW_BLACKOIL_ONLY hack from Main.hpp 
now that the python simulator uses runStatic, the
runDynamic template is never instanced, and thus there
are no linker issues.
 2021-11-10 10:07:11 +01:00
Arne Morten Kvarving
3a512c0f20 changed: use runStatic in python simulator 2021-11-10 09:51:17 +01:00
Håkon Hægland
7a394df43f Include <stdexcept> header to use std::logic_error() 
And some minor stylistic changes.
 2021-09-23 13:13:23 +02:00
Håkon Hægland
4c5245196b Changed calling convention for shared pointers. 
Expect non-reference type shared pointers arguments instead of references
to shared pointer. This will make it clear to the caller that the called
function is making a copy of the pointer for its own use and not trying
to modify the original pointer of the caller.
 2021-09-22 23:49:13 +02:00
Håkon Hægland
5ad65c70ee Initialize blackoil simulator from schedule shared with Python. 
Adds a new constructor to Main.hpp that takes shared pointers to Deck,
EclipseState, Schedule, and SummaryConfig. This makes it possible to
share these variables with Python without worrying about lifetime issues
of the underlying C++ objects. For example, a Python script can first
create an opm.io.schedule.Schedule object which is modified from Python.
Then, assume the same Python script creates an
opm.simulators.BlackOilSimulator which is initialized with the same
schedule object. Since the underlying C++ object is a shared pointer,
the Schedule object in Python may go out of scope (get deleted by Python)
without having the C++ schedule object being deleted. And the Python
BlackOilSimulator may continue to be used after the Python Schedule object
has been deleted since it still has a valid C++ schedule object.
 2021-09-21 15:52:59 +02:00