josh bowden
2744614f9c
update after pull request comments; addition of OUTPUTDIR variable to Damaris XML configuration
2024-05-17 17:36:18 +02:00
josh bowden
3630177e3e
added ability to pass through multiple variables to Damaris, with full list still defined in initDamarisXmlFile.cpp ; Also adds ability to limit the variables to be passed through using --damaris-limit-variables=<CSV list> coammand line option
2024-05-14 21:08:47 +02:00
David Landa Marban
9671792106
summary for immobile free-phase at saturations for which the nonwetting relative permeability equals zero
2024-04-12 15:31:22 +02:00
Josh Bowden
55dc80725f
Improved in-line help comments; output MPI cell values to HDF5 only when saving mesh to HDF5; removed timing data
2023-12-14 10:27:05 +01:00
Josh Bowden
e16cd9a3b3
finalise the PR 4889 modifications - added command line option to specifiy the shared memory file name in the <buffer> XML element --damaris-shared-memory-name which will be a randomised string opm-damaris-<random-string> for better multi-simulation behaviour when running more than one simulation on a single node.
2023-12-13 18:14:45 +01:00
Josh Bowden
757a96941a
final review changes from PR 4889 and added extra command line argument to output mesh data --damaris-save-mesh-to-hdf
2023-12-13 18:14:37 +01:00
Josh Bowden
9309f5a1bd
overhaul of GridDataOutput class to accept a vector type so that raw pointers are not overrun, this has lead to finding a good way to get the size of the data area that is alloacted by the DamarisVar wrapper class for damaris_alloc()
2023-12-13 18:14:06 +01:00
Josh Bowden
0f1d31c88a
sets the SHMEM buffer name to be the same as the simulation name, usefull if running multiple simulations on the same machine, so that buffers are not removed by other simulations
2023-12-08 11:00:22 +01:00
Josh Bowden
89fabf132e
adding command line option to specify the dask file being used --damaris-dask-file= that will add the file name to the Daamris XML configuration file
2023-12-08 10:59:51 +01:00
josh bowden
11a81211bd
Corrected simlation name default if not specified on command line;
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Default log level changed to info and flush only enabled when debug or trace are enabled;
2023-09-25 21:03:34 +02:00
josh bowden
bb38c57b1b
Update for support of Damaris mesh based in situ processing
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Moved damaris command line parameter accessors to Main.cpp and fixed support for both Python and Paraview Python scripts, as they both cannot be present in the same simulation (seems to be an initialization conflict or double initialization)
2023-09-23 22:24:11 +02:00
josh bowden
8095eb0c48
Geometric mesh data added for in-situ visualisation
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added access to DUNE mesh geometry and passing through data to Damaris;
Updated command line so users can specifiy Python or Paraview script names and other paramaters that control Damaris
- Simulation name
- Number of dedicated cores or dedicated nodes
- Shared memory region size
- switch to turn off HDF5 output.
- Damaris logging level
2023-09-22 23:23:29 +02:00
josh bowden
1e2d9360d7
Move Damaris functionality to it's own class.
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Step one for moving Damaris calls out of EclWriter class and into its own DamarisWriter class;
EclProblem now calls both writeOutput methods and passes in the data::Solution object;
Add fix for first writeOutput() call not having PRESSURE data available;
data::Solution is now passed by rvalue ref into eclWriter::writeOutput();
guard added to prevent inclusion of damariswriter.hh
2023-09-19 21:20:08 +02:00
Josh Bowden
89d13e479c
Update to the opm-flow internal Damaris XML to support the HDF5 select writing option so that local variable data is written to global variable position in HDF5 output
2023-09-01 12:02:04 +02:00
Atgeirr Flø Rasmussen
18f6f5e4e3
Push index map to Damaris for output ordering.
2022-12-07 13:05:44 +01:00
Atgeirr Flø Rasmussen
76bacff3cf
Move XML template to separate file, fix formatting, and use path.
2022-10-13 12:23:06 +02:00
