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1905 Commits

Author SHA1 Message Date
Arne Morten Kvarving
fd3c99c9e1 DamarisWriter: use implicit string constructor 2024-01-31 09:28:52 +01:00
Arne Morten Kvarving
6ec5fd1d97 DamarisWriter: use std::partial_sum 2024-01-31 09:28:52 +01:00
Arne Morten Kvarving
89238fd472 DamarisWriter: remove empty destructor 2024-01-31 09:28:52 +01:00
Arne Morten Kvarving
4f366ddb9f DamarisWriter: avoid Opm:: prefix for symbols inside Opm namespace 2024-01-31 09:28:52 +01:00
Bård Skaflestad
adc8b968e4
Merge pull request #5126 from daavid00/pcogGasWaterOutput 
Write pc for watergas systems
 2024-01-30 17:40:56 +01:00
David Landa Marban
66db0485b6 Write pc for watergas systems 2024-01-30 16:15:22 +01:00
Arne Morten Kvarving
89880bfe2f damariswriter: properly encapsulate Damaris 2024-01-30 14:19:20 +01:00
Bård Skaflestad
472199f63d
Merge pull request #5132 from blattms/fix-shared-linking 
Fix linking errors when using shared libraries.
 2024-01-30 11:02:51 +01:00
Lisa Julia Nebel
cc64576a79 Change function removeSmallNonCartesianTransmissibilities_ to removeNonCartesianTransmissibilities_(bool removeAll) 2024-01-29 18:46:59 +01:00
Markus Blatt
819842d7cf Fix linking errors when using shared libraries. 
We accomplish that by passing the module version as a string to the
constructors of LogOutputHelper and EclGenericOutputBlackoilModel
instead of calling moduleVersionName() in LogOutputHelper. That way
moduleVersionName is not needed by libopmsimulators anymore and
compilation works again for people requesting shared libraries via
CMake's BUILD_SHARED_LIBS variable.
 2024-01-29 16:37:38 +01:00
Arne Morten Kvarving
96a3a6d45a changed: move hdf5serializer to opm/simulators/utils/HDF5Serializer.hpp 
does not interact with typetag system
 2024-01-29 09:42:49 +01:00
Markus Blatt
ddb174f401
Merge pull request #5125 from aritorto/rmNumElems 
[refactor] Remove numElems from LookUpData methods
 2024-01-26 14:19:04 +01:00
Antonella Ritorto
b9124a2688 Fix warning unused-variable 2024-01-26 12:28:06 +01:00
Antonella Ritorto
921b7b577a Remove numElems from LookUpData methods 2024-01-26 09:40:05 +01:00
Tor Harald Sandve
2fce942a5c refactor updateCO2InWater 2024-01-26 09:33:26 +01:00
Tor Harald Sandve
de05c84b1d Add co2 mass in place summary vectors 2024-01-26 09:15:43 +01:00
Bård Skaflestad
0c359983b7
Merge pull request #5118 from aritorto/rvActnum 
Unnecessary vector removed
 2024-01-24 13:48:56 +01:00
Antonella Ritorto
5bf0e10f3e Unnecessary container actnumData removed 2024-01-24 10:40:40 +01:00
Bård Skaflestad
eb9ead5577 Support at Least NTFIP Distinict Regions for Inter-Region Flow 
This commit ensures that we have backing support for region IDs up
to and including NTFIP (TABDIMS(5), REGDIMS(1)).  The existing setup
would fail (segmentation violation) in the case of a summary vector
of the form

    ROFT
      36 31 /
    /

when the maximum FIPNUM value was 30.  We nevertheless support
maximum FIPNUM values exceeding NTFIP.

We add a new optional parameter to the EclInterRegionFlowMap
constructor.  The parameter allows client code to specifiy a
"minimum maximum" region ID that all ranks must support.  This value
will be enforced during parallel aggregation.
 2024-01-24 09:54:44 +01:00
Bård Skaflestad
42476bedb2
Merge pull request #5115 from akva2/move_mpi_serializer 
changed: move ebos/eclmpiserializer.hh to opm/simulators/utils/MPISerializer.hpp
 2024-01-23 12:53:21 +01:00
Arne Morten Kvarving
98c704c1c3 changed: move ebos/eclmpiserializer.hh to opm/simulators/utils/MPISerializer.hpp 
it does not use the typetag system
 2024-01-23 10:51:32 +01:00
Atgeirr Flø Rasmussen
4eef78e1c8
Merge pull request #5101 from totto82/nodisp_gas 
warn against no dispersion in gas phase
 2024-01-23 09:25:50 +01:00
Atgeirr Flø Rasmussen
5fa48824d0
Merge pull request #5109 from jcbowden/damaris-fix-mesh-offsets-size 
Fix for crash when Damaris is deallocating variables
 2024-01-23 09:00:07 +01:00
Tor Harald Sandve
7c37470bd8
Merge pull request #5107 from totto82/addTemp 
Add support for temperature in Source
 2024-01-23 08:44:30 +01:00
Tor Harald Sandve
af65aa4626
Merge pull request #5112 from akva2/rstconv_sol_pol_sal 
added: RST CONV support for polymer, solvent and brine
 2024-01-22 15:23:15 +01:00
Markus Blatt
8b4bc32d62
Merge pull request #5079 from aritorto/lgrCreateResetTrans 
Support LGRs when creating/resetting transmissibilities
 2024-01-22 11:46:29 +01:00
Arne Morten Kvarving
873102e9ea added: RST CONV support for polymer, solvent and brine 2024-01-22 09:58:06 +01:00
Tor Harald Sandve
222358c49e Add support for temperature in Source 2024-01-19 08:26:26 +01:00
Joshua Bowden
5e66b07255 fix for crash when cleaning up damaris mesh offset variable due to shared memory buffer being size off by one 2024-01-18 16:36:47 +01:00
Tor Harald Sandve
5c1bbd304b Compute entalpy for thermal boundary 2024-01-18 16:04:32 +01:00
Arne Morten Kvarving
be84969338 added: hook up RPTRST CONV output to restart file if requested 2024-01-16 12:58:02 +01:00
Tor Harald Sandve
8a1f4d5455
Merge pull request #5089 from totto82/explicit_rockcomp 
add option for explicit pressure for rock compaction (only transmissibility)
 2024-01-12 12:24:33 +01:00
Tor Harald Sandve
624ef7faf1
Merge pull request #5088 from totto82/avgTransMult 
use arithmetic averaged compaction transmissibility multipliers
 2024-01-12 10:01:14 +01:00
Tor Harald Sandve
d72ea5fcb0 add option for explicit pressure for rock compaction (only transmissibility) 2024-01-11 16:09:08 +01:00
Tor Harald Sandve
51532231b3 warn against no dispersion in gas phase 2024-01-11 15:27:40 +01:00
Tor Harald Sandve
739337a63a rename minimum oil pressure to ref pressure 2024-01-11 10:24:25 +01:00
Tor Harald Sandve
b670c48699 Use gas pressure for gas-water cases in rockcomp 2024-01-11 10:06:07 +01:00
Tor Harald Sandve
d044928f34 use arithmetic averaged compaction transmissibility multipliers 2024-01-11 09:55:04 +01:00
Arne Morten Kvarving
ec9c704def cosmetics and header cleanups in damaris classes 2024-01-10 14:16:02 +01:00
Arne Morten Kvarving
ed28d7c9ef changed: move damaris command line properties to separate file 
to avoid pulling in the whole writer in DamarisKeywords.hpp
 2024-01-10 14:16:02 +01:00
Atgeirr Flø Rasmussen
ea623f0f3e
Merge pull request #5050 from totto82/addSource 
support source term from deck (SOURCE)
 2024-01-09 13:16:16 +01:00
Bård Skaflestad
60c7c79f58 Output Well Flow Sheets for All Wells 
There is no need to restrict PRT file flow reports to those wells
which are active on the current rank since the SummaryState object
holds information for all wells active at the current report step.
 2024-01-08 08:58:51 +01:00
Bård Skaflestad
b58b0f8879
Merge pull request #5091 from locture/master 
Bugfix for a corner case in MPI
 2024-01-08 08:50:49 +01:00
locture
da2ce029ff
Update ecltransmissibility_impl.hh 
Update the comparison。
 2024-01-06 00:39:46 -06:00
Svenn Tveit
756398e1ad Output RPORV in RPTRST 2024-01-05 10:52:19 +01:00
locture
204ebacbf2
Bugfix for a corner case in MPI 
A corner case was hit when running the model in MPI.

The conditions become something like:
elemIdx < outsideElemIdx
insideFaceIdx == 4
useSmallestMultiplier == true

Which ultimately leads to an assert failure in applyAllZMultipliers_().

Changing the comparision between insideCartElemIdx and outsideCartElemIdx gets the bug fixed.
 2024-01-05 02:46:43 -06:00
Torbjørn Skille
72892f0c4b PRT file updates 
* Arrays genarated from RPTSOL + FIP is now strictly following Eclipse format
* Adding reservoir volume array also for custom FIP regions
 2024-01-03 21:47:54 +01:00
Arne Morten Kvarving
acc31ea695 fixed: obtaining solvent values should be conditional on enableSolvent 
regressed in f508f3d4e8
 2024-01-02 12:04:07 +01:00
Tor Harald Sandve
84902e1aed rename sourceprop to source 2023-12-22 09:50:52 +01:00
Tor Harald Sandve
a57d04fde5 support source term from deck (SOURCE) 2023-12-22 09:50:52 +01:00
Atgeirr Flø Rasmussen
bf55fcfd93
Merge pull request #5038 from totto82/addBondaryFluxOutput 
Add output of FLOWS- and FLORES-
 2023-12-21 15:46:50 +01:00
Tor Harald Sandve
04770275d2
Merge pull request #4991 from totto82/h2co2sol 
add output of dissolved solvent rswsol
 2023-12-21 14:55:02 +01:00
Tor Harald Sandve
f508f3d4e8 add output of dissolved solvent rswsol 2023-12-21 10:48:58 +01:00
Tor Harald Sandve
87361b8f8d Throw in output if OwnerCellsFirst = False 2023-12-20 15:36:36 +01:00
Tor Harald Sandve
6eeb5b4187 Only output interior cells 2023-12-20 13:00:46 +01:00
Markus Blatt
78e8ceccba
Merge pull request #5078 from aritorto/throwMULTZ 
Throw for LGRs combine with TRANX/Y/Z
 2023-12-20 12:03:11 +01:00
Arne Morten Kvarving
fb725f89ad remove unused variables 
fix a typo and add spaces in comments
 2023-12-19 23:26:08 +01:00
Antonella Ritorto
8113dad1c9 Support LGRs when creating/resetting transmissibilities 2023-12-19 20:43:26 +01:00
Antonella Ritorto
af257740c8 Throw for LGRs combine with TRANX/Y/Z 2023-12-19 20:31:42 +01:00
Antonella Ritorto
76b51aca76 Throw applyAllZMultipliers_ for LGRs 2023-12-19 13:17:54 +01:00
Markus Blatt
eec2fbaaa1
Merge pull request #5071 from aritorto/assertSameParent 
Assert refactored to include same-parent-leaf-cells
 2023-12-18 19:36:18 +01:00
Markus Blatt
784131509f
Merge pull request #5072 from aritorto/lookupExtractPerm 
Lookup origin index for correct extractPermeability_
 2023-12-18 19:34:51 +01:00
Antonella Ritorto
6d19c1dd53 Lookup for extractPorosity and extractDispersion_ 2023-12-18 15:47:44 +01:00
Antonella Ritorto
0f39554561 Lookup origin in extractPermeability_ 2023-12-18 15:14:43 +01:00
Antonella Ritorto
1fb708a239 Assert refactored to include same-parent-leaf-cells 2023-12-18 14:28:29 +01:00
Markus Blatt
acc08799a4
Merge pull request #5064 from aritorto/lookupAssigner 
lookupIdxOnLevelZeroAssigner added
 2023-12-18 11:33:56 +01:00
Atgeirr Flø Rasmussen
1dbd971710
Merge pull request #4889 from jcbowden/damariswriter-for-sim-fields-v5 
Geometric mesh data added for Damaris in-situ visualisation
 2023-12-15 10:18:00 +01:00
Antonella Ritorto
bba5833332 Move lookupAssigner to remove shadow decl warnings 2023-12-14 20:01:25 +01:00
Antonella Ritorto
1f77b0c199 Shadow declaration Grid(Type) fixed 2023-12-14 16:25:53 +01:00
Antonella Ritorto
0a8e1fa757 lookupIdxOnLevelZeroAssigner added 2023-12-14 16:12:48 +01:00
Josh Bowden
55dc80725f Improved in-line help comments; output MPI cell values to HDF5 only when saving mesh to HDF5; removed timing data 2023-12-14 10:27:05 +01:00
Josh Bowden
e16cd9a3b3 finalise the PR 4889 modifications - added command line option to specifiy the shared memory file name in the <buffer> XML element --damaris-shared-memory-name which will be a randomised string opm-damaris-<random-string> for better multi-simulation behaviour when running more than one simulation on a single node. 2023-12-13 18:14:45 +01:00
Josh Bowden
757a96941a final review changes from PR 4889 and added extra command line argument to output mesh data --damaris-save-mesh-to-hdf 2023-12-13 18:14:37 +01:00
Josh Bowden
9309f5a1bd overhaul of GridDataOutput class to accept a vector type so that raw pointers are not overrun, this has lead to finding a good way to get the size of the data area that is alloacted by the DamarisVar wrapper class for damaris_alloc() 2023-12-13 18:14:06 +01:00
Josh Bowden
54d6db6f35 Update 1 for code after code review of PR 4889 2023-12-13 18:13:55 +01:00
Tor Harald Sandve
b9ecc2ac8f
Merge pull request #5058 from totto82/fixInitTemp 
BUGFIX. Use given temperature in the density calculations in the initialisation
 2023-12-13 15:49:32 +01:00
Antonella Ritorto
9419966036 Assigner for material props on leaf used 2023-12-13 12:32:23 +01:00
Antonella Ritorto
924eb72acd getFieldPropDouble(IntType)Assigner_ added 2023-12-13 10:19:52 +01:00
Tor Harald Sandve
8c66465c71 BUGFIX. Use given temperature in the density calculations in the initialization 2023-12-13 09:45:38 +01:00
Bård Skaflestad
b1cba34eba Report Destination File for Unhandled Report Keywords 
That way, the user gets a little more information and will be in a
better position to assess whether or not the missing support is a
real problem.
 2023-12-08 22:09:15 +01:00
Arne Morten Kvarving
7328b91958 adjust to data::CellData changes 2023-12-08 18:41:35 +01:00
Markus Blatt
3b60e1ef89
Merge pull request #5047 from totto82/applyMultBC 
Apply MULT[XYZ] to boundary trans
 2023-12-08 14:51:12 +01:00
Tor Harald Sandve
d687ad8803 Apply MULT[XYZ] to boundary trans 2023-12-08 12:51:20 +01:00
Josh Bowden
89fabf132e adding command line option to specify the dask file being used --damaris-dask-file= that will add the file name to the Daamris XML configuration file 2023-12-08 10:59:51 +01:00
Bård Skaflestad
d79bd2848f Prune ForceDisable Parameters From *Log Functions 
They aren't really needed in the current sources.  We can readd
them, or something similar, if the need to turn off these reports
from a command line parameter arises.

Suggested by: [at]akva2.
 2023-12-08 10:37:20 +01:00
Bård Skaflestad
ec549df37b Remove Spurious Blank Lines in PRT File Reports 
The StreamLog::addMessageUnconditionally() member function will end
each message with a newline (std::endl) so we should not add such
newlines ourselves.  The extra newline characters produce spurious
blank lines in the report sheets, e.g., for the "PRODUCTION REPORT".

This commit removes the last newline character from each report
request, thus deferring that responsibility to OpmLog::note()
instead.  Doing so, however, means we have take a little more care
with the first line of each report lest we create report sheets
which are smushed together.
 2023-12-08 10:22:43 +01:00
Bård Skaflestad
6b18cbafc6 Pull Substep Checking out of *Log() Functions 
This commit removes the 'substep' parameter from the output module's
outputProdLog(), outputInjLog(), and outputCumLog() member
functions.  This parameter was only used in the same way in internal
conditions in each member function and we can enforce that check on
the outside without losing expressivity.
 2023-12-08 10:22:43 +01:00
Tor Harald Sandve
01d138fbe3 Add output of FLOWS- and FLORES- 2023-12-06 08:41:35 +01:00
Arne Morten Kvarving
d120fe1ebc fixed: grab list of FIP regions from FieldPropsManager 
not from SummaryConfig. the latter only holds regions with
summary keywords
 2023-12-04 13:24:32 +01:00
Antonella Ritorto
8017ff9a02 add cartesianCoordianteLevel in ALUCartIdxMapp, used in RelperDiag 2023-11-28 15:47:00 +01:00
Markus Blatt
24408862ff
Merge pull request #5008 from aritorto/compressedLevelZero 
compressedLevelZero used to read relative permeability
 2023-11-24 13:21:23 +01:00
Tor Harald Sandve
5a6af752e3
Merge pull request #4912 from totto82/fix_bccon 
fix issue when BCPROP is not set initially
 2023-11-22 13:41:19 +01:00
Antonella Ritorto
6d180a7f91 compressedLevelZero added in AluCartIdxMapper, used in RelpermDiags 2023-11-20 15:56:17 +01:00
Bård Skaflestad
c0c96123bc Add Support for Writing NLDD-Like Partitions in Parallel 
This commit adds a new (hidden) debugging option,

    DebugEmitCellPartition (--debug-emit-cell-partition)

which, when set, will cause each rank to write a three-column text
file of the form

    MPI_Rank  Cartesian_Index  NLDD_Domain_ID

into the directory

    partition/CaseName

of the run's output directory.  That file will be named according to
the process' MPI rank, so the first column will be the same as the
file name.

The option is primarily intended for debugging the NLDD partitioning
scheme, so is mostly reserved for runs with low MPI sizes (e.g.,
less than 20).

While here, also make the MPIPartitionFromFile helper class aware of
this format so that we can use concatenated output files as an input
to the MPI partitioning algorithm for repeatability.
 2023-11-17 09:17:46 +01:00
Atgeirr Flø Rasmussen
d069081b52
Merge pull request #4960 from daavid00/dispersivity 
Support for mechanical dispersion
 2023-11-17 08:50:00 +01:00
David Landa Marban
bc03821d57 Support for mechanical dispersion 2023-11-16 16:55:01 +01:00
Bård Skaflestad
610c45aa77 Add Support for Reading MPI Partitioning From File 
This commit introduces new, experimental support for loading a
partitioning of the cells from a text file.  The name of the file is
passed into the simulator using the new, hidden, command line option

    --external-partition=filename

and we perform some basic checking that the number of elements in the
partition matches the number of cells in the CpGrid object.
 2023-11-16 16:28:14 +01:00
Arne Morten Kvarving
db85303a3e added: write out RPTSOL configured FIPs to PRT file on simulation start 
add a method in EclWriter to enable this.
this is called the first time a call is made to WriteOutput,
as that happens after initial conditions have been applied which
is required to get the proper output.

this also fixes a long-standing issue where the initial FIP state was
taken after the first time step.
 2023-11-16 08:28:57 +01:00
Arne Morten Kvarving
1e41df3bca added: pass reportStep to FIP output functions 
use this to decide whether or not to use the RPTSOL configuration
(reportStep == 0) or to read flags from RPTSCHED (reportStep > 0)
 2023-11-16 08:12:55 +01:00
Markus Blatt
a70df8cf0a
Merge pull request #4995 from aritorto/removeSmallNonCart 
Lgrs neighbors considered in removeSmallNonCart
 2023-11-14 10:00:34 +01:00