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4db49a3785ecbb6064f8bf2ae50655481b7bd5e8
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4664 Commits

Author SHA1 Message Date
Josh Bowden
4db49a3785 Reformat using clag-format with default OPM format guide 2023-12-14 17:30:21 +01:00
Josh Bowden
8094504018 Jenkins build error issue fix for unused typedefs 2023-12-14 12:39:18 +01:00
Josh Bowden
55dc80725f Improved in-line help comments; output MPI cell values to HDF5 only when saving mesh to HDF5; removed timing data 2023-12-14 10:27:05 +01:00
Josh Bowden
e16cd9a3b3 finalise the PR 4889 modifications - added command line option to specifiy the shared memory file name in the <buffer> XML element --damaris-shared-memory-name which will be a randomised string opm-damaris-<random-string> for better multi-simulation behaviour when running more than one simulation on a single node. 2023-12-13 18:14:45 +01:00
Josh Bowden
757a96941a final review changes from PR 4889 and added extra command line argument to output mesh data --damaris-save-mesh-to-hdf 2023-12-13 18:14:37 +01:00
Josh Bowden
9309f5a1bd overhaul of GridDataOutput class to accept a vector type so that raw pointers are not overrun, this has lead to finding a good way to get the size of the data area that is alloacted by the DamarisVar wrapper class for damaris_alloc() 2023-12-13 18:14:06 +01:00
Josh Bowden
54d6db6f35 Update 1 for code after code review of PR 4889 2023-12-13 18:13:55 +01:00
Josh Bowden
0f1d31c88a sets the SHMEM buffer name to be the same as the simulation name, usefull if running multiple simulations on the same machine, so that buffers are not removed by other simulations 2023-12-08 11:00:22 +01:00
Josh Bowden
89fabf132e adding command line option to specify the dask file being used --damaris-dask-file= that will add the file name to the Daamris XML configuration file 2023-12-08 10:59:51 +01:00
josh bowden
d928078219 fix added for unused parameter when Damaris does not have Python of Paraview compiled in 2023-09-28 19:37:23 +02:00
josh bowden
f72553d049 another string declared within the HAVE_PYTHON_ENABLED code guards 2023-09-28 14:32:20 +02:00
josh bowden
c589a5fa00 Guard for Python and Paraview hid lack of semicolon 2023-09-28 13:32:42 +02:00
josh bowden
7f7f3b06b2 Chane to fix issue with command line argument template 
integrating code modification suggested by Arne Morten Kvarving (https://github.com/jcbowden/opm-simulators/pull/1)
 2023-09-28 12:58:18 +02:00
josh bowden
4a965fe297 some changes to test for paraview and python scripts 2023-09-28 11:12:26 +02:00
josh bowden
c66f7b4fab tidy up of headers 2023-09-25 22:24:40 +02:00
josh bowden
8898db41d7 Reorganised headers, removing redundant ones; 
Tidy up of whitespace.
 2023-09-25 22:16:43 +02:00
josh bowden
11a81211bd Corrected simlation name default if not specified on command line; 
Default log level changed to info and flush only enabled when debug or trace are enabled;
 2023-09-25 21:03:34 +02:00
josh bowden
c7c4bffa7c Refactored the Damaris command line functionality so that commandline arguments are accessed where they are needed in the DamarisKeywords() method 2023-09-24 22:23:31 +02:00
josh bowden
bb38c57b1b Update for support of Damaris mesh based in situ processing 
Moved damaris command line parameter accessors to Main.cpp and fixed support for both Python and Paraview Python scripts, as they both cannot be present in the same simulation (seems to be an initialization conflict or double initialization)
 2023-09-23 22:24:11 +02:00
josh bowden
8095eb0c48 Geometric mesh data added for in-situ visualisation 
added access to DUNE mesh geometry and passing through data to Damaris;
Updated command line so users can specifiy Python or Paraview script names and other paramaters that control Damaris
- Simulation name
- Number of dedicated cores or dedicated nodes
- Shared memory region size
- switch to turn off HDF5 output.
- Damaris logging level
 2023-09-22 23:23:29 +02:00
Atgeirr Flø Rasmussen
18f0d8fd27 Merge pull request #4859 from jcbowden/damariswriter-for-sim-fields-v4 
Damaris - Moving Damaris functionality to it's own class
 2023-09-20 09:06:48 +02:00
josh bowden
1e2d9360d7 Move Damaris functionality to it's own class. 
Step one for moving Damaris calls out of EclWriter class and into its own DamarisWriter class;
EclProblem now calls both writeOutput methods and passes in the data::Solution object;

Add fix for first writeOutput() call not having PRESSURE data available;

data::Solution is now passed by rvalue ref into eclWriter::writeOutput();

guard added to prevent inclusion of damariswriter.hh
 2023-09-19 21:20:08 +02:00
Bård Skaflestad
40927cb173 Merge pull request #4877 from GitPaean/bhp_lower_limit_below_1bar 
reducing the bhp lower limit slightly to handle 1 bar bhp limit
 2023-09-19 18:44:37 +02:00
Kai Bao
9d642fd7ce only outputting some network info to the rank 0 process 2023-09-19 16:17:19 +02:00
Kai Bao
f4a420d2f9 reducing the bhp lower limit slightly to handle 1 bar bhp limit 
it turns out that 1bar is the default bhp constraint for some keywords,
   and some cases are depending on it.
 2023-09-19 15:30:42 +02:00
Vegard Kippe
cc39e04180 Addresing review comments 2023-09-18 13:05:12 +02:00
Atgeirr Flø Rasmussen
a59920cee2 Merge pull request #4870 from blattms/print-missing-restart-file 
Include name of missing OPM restart file in error.
 2023-09-15 15:29:50 +02:00
Markus Blatt
b209f6af77 Merge pull request #4778 from aritorto/cellCentroid 
Refactor element centroids lookup
 2023-09-15 10:02:15 +02:00
Markus Blatt
81c9594f5d Include name of missing OPM restart file in error. 
Otherwise it is hard to tell for the (newbie?) user what went wrong.
 2023-09-14 16:10:42 +02:00
Alf Birger Rustad
91a670d796 PARAOPTS and SOLVDIRS should only give warning 2023-09-14 09:22:36 +02:00
Tor Harald Sandve
b55270defe Merge pull request #4854 from vkip/gecon_closure_reason_group 
Set GECON closure reason to GROUP, to not open with WTEST option 'E'.
 2023-09-14 08:58:32 +02:00
Bård Skaflestad
6f27ffa68d Merge pull request #4862 from vkip/avoid_negative_relaxation_factor_fraction 
Avoid fraction relaxation factors outside [0,1] (standard wells)
 2023-09-13 16:45:11 +02:00
Bård Skaflestad
69e9bf624a Merge pull request #4860 from GitPaean/not_relaxing_rate_update 
removing rate relaxation during updateNewton for StandardWellPrimaryVariables
 2023-09-13 15:31:44 +02:00
Atgeirr Flø Rasmussen
9206e8b3db Merge pull request #4863 from bska/interior-cell-grid-view 
Implement Interior Cell Counts for Grid Views
 2023-09-13 12:24:00 +02:00
Kai Bao
b79e3a7de2 removing rate relaxation during updateNewton in StandardWellPrimaryVariables 
it was introduced back then for some purpose. The purpose might not
apply anymore due to other development. And also, some issues were
reported for some situtation with the approach.
 2023-09-13 12:16:58 +02:00
Atgeirr Flø Rasmussen
708401ca14 Merge pull request #4861 from hnil/fixed_msw_addwellcontricutions 
fixed add-well-contributions for multisegement wells
 2023-09-13 11:40:40 +02:00
Atgeirr Flø Rasmussen
3673c05242 Merge pull request #4848 from vkip/gconsump_mpi_fix 
Avoid adding/substracting GCONSUMP values per MPI process..
 2023-09-13 11:00:04 +02:00
Vegard Kippe
2b45785097 Using std::clamp 2023-09-12 12:52:41 +02:00
Bård Skaflestad
a2d43cd0f5 Implement Interior Cell Counts for Grid Views 
This is mostly to prepare for implementing partitionCells() for
grid views instead of grids.
 2023-09-12 12:37:10 +02:00
hnil
29e968c232 fixed add-well-contributions for multisegement wells 2023-09-12 09:49:15 +02:00
Vegard Kippe
4638b3a9be Avoid fraction relaxation factors outside [0,1] in the standard well model. 2023-09-12 00:20:02 +02:00
Vegard Kippe
a12f0aaa13 Set GECON closure reason to GROUP, to not open with WTEST option 'E'. 2023-09-08 11:16:11 +02:00
Vegard Kippe
dbd1d343e8 Avoid adding/substracting GCONSUMP values per MPI process.. 2023-09-07 14:14:56 +02:00
Bård Skaflestad
1d33e7caf0 Merge pull request #4806 from totto82/initBHPinj 
initialize all injectors with a rate to avoid singularities
 2023-09-07 14:06:23 +02:00
Bård Skaflestad
bb04054d2c Merge pull request #4842 from totto82/wellPressGW 
use gas pressure for gas-water system in the well model
 2023-09-07 12:47:05 +02:00
Bård Skaflestad
467671b946 Merge pull request #4840 from totto82/solvent_well_fix 
Solvent well fix
 2023-09-07 12:45:56 +02:00
Tor Harald Sandve
79e0b7256a initialize all injectors with a rate to avoid singularities 2023-09-07 12:03:04 +02:00
Kai Bao
529af98ce9 setting uninitialized bhp to be bhp_limit in updateWellStateWithTarget 
to avoid uninitialized bhp 0. to be used.
 2023-09-07 08:50:37 +02:00
Bård Skaflestad
f32b8e17ed Merge pull request #4815 from plgbrts/std-netw-gaslift 
Add FLO as supported option of item 6 of GRUPNET
 2023-09-06 14:51:51 +02:00
Tor Harald Sandve
8796fa1ccc use gas pressure for gas-water system in the well model 2023-09-06 13:46:18 +02:00