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226 Commits

Author SHA1 Message Date
Philipp Nuske
722017ffff - A new section on the usage of the parameter files. Nothing fancy but hopefully helpful for (first time) usage. Feel free to change or move somewhere else :-) 2012-07-12 21:24:52 +02:00
Benjamin Faigle
01a322bfe7 reworked tutorials for dumux 2.1, added exercices for parameter input 2012-07-12 21:24:51 +02:00
Klaus Mosthaf
68896a5214 work on the tutorial description for the coupled models 2012-07-12 21:24:50 +02:00
Andreas Lauser
5efb7f0256 handbook: finalize fluid frameworks chapter 
(at least for Dumux 2.1)
 2012-07-12 21:24:49 +02:00
Andreas Lauser
e15802f2f7 handbook: sime proof reading of the fluid framework chapter, fixes to minor LaTeX issues 
there are some dangling references in the decoupled tutorial, but
AFAIK this will receive some love by Benjamin before the release.
 2012-07-12 21:24:48 +02:00
Andreas Lauser
b2a873fc10 handbook: extend fluid framwork chapter with section on the constraint solvers 
TODO: proof read, citations
 2012-07-12 21:24:47 +02:00
Andreas Lauser
a159e40af1 handbook: work on the fluid framework chapter 
TODO: section on constraint solvers.
 2012-07-12 21:24:46 +02:00
Andreas Lauser
9942e2604f handbook: boost and pdelab are no longer required 2012-07-12 21:24:46 +02:00
Katherina Baber
bc62d59bdf adapted "Flow-of-things" to new structure and made some corrections 2012-07-12 21:24:46 +02:00
Philipp Nuske
da95f1341b - added one more paragraph to 'Newton in a nutshell' I hope it helps 2012-07-12 21:24:46 +02:00
Andreas Lauser
5c167e93d7 detect latex more verbosely and prevent it from stopping the build when it encounters an error 2012-07-12 21:24:45 +02:00
Bernd Flemisch
1696ae560e Changed structure of Handbook 2012-07-12 21:24:44 +02:00
Andreas Lauser
4706fcf898 new institute name in remaining files 2012-07-12 21:24:43 +02:00
Andreas Lauser
12c4a01eb7 fix a few doxygen warnings 2012-07-12 21:24:41 +02:00
Andreas Lauser
84998acd5f handbook: add stub for fluid framework chapter, update chapter on property system 2012-07-12 21:24:35 +02:00
Andreas Lauser
01e2556916 handbook: only build handbook if all required programs and packages are available 2012-07-12 21:24:31 +02:00
Bernd Flemisch
366fe98949 Removed the dependence on pdelab from the INSTALL file, acknowledged the 2.1.1 release of common in the handbook 2012-07-12 21:24:28 +02:00
Benjamin Faigle
6e537d5670 re-added decoupled model descriptions to handbook, updated completely outdated decoupled2p2c, removed unneccessary file. 2012-07-12 21:24:21 +02:00
Benjamin Faigle
72832a8b24 changes in restart behaviour: - restart mechanism is now called from init(..) method in time manager for all models via problem().restart(...); - hence, calls to problem or models in application files and in the default start procedure are deleted (included in timeManager) - timeManager().init(...) now has a real restart bool defining if a restart was called by the user. Bool is true if restart is desired. - Decoupled models: to enable restart, the writer is only called with the access function to avoid segmentation fault. - Adapt tutorial to the change 2012-07-12 21:24:18 +02:00
Viktor Szukitsch
d364fe1989 handbook: language improvements 2012-07-12 21:24:15 +02:00
Andreas Lauser
2e66949860 handbook: add item to describe function arguments at calling sides 
IMHO that's not a lot of effort but makes the code much more readable
 2012-07-12 21:24:15 +02:00
Markus Wolff
b1bd56688f changed tutorial because of changed definition of Material Laws 2012-07-12 21:24:10 +02:00
Markus Wolff
7d74f7132c adapted decoupled tutorial to interface changes of decoupled 2p model 2012-07-12 21:24:09 +02:00
Benjamin Faigle
b1fd80d743 Time manager is instantiated in application file Problems instantiated with Timemanager TimeManager now runs the problem 
update of handbook according to that.
 2012-07-12 21:24:09 +02:00
David Werner
813a7dd0d7 Update of version numbers and pathes in installation chapter 2012-07-12 21:24:08 +02:00
Christoph Grueninger
177caed960 Minor changes in text, like removed superfluous commas, missing space, removed surplus word and fixed FORTRAN to Fortran because it's already called that way for more than 20 years. 2012-07-12 21:23:20 +02:00
Philipp Nuske
f1ca69362d added some more guides on how to comment things in \Dumux 2012-07-12 21:23:20 +02:00
Christoph Grueninger
a2fb5b0280 DuMuX Handbook: Removed superfluous footnote which contained information concerning the depreciated dune-disc. 2012-07-12 21:23:19 +02:00
Markus Wolff
8de38c55e0 correction in decoupled exercise 2 2012-07-12 21:23:08 +02:00
Klaus Mosthaf
d132672522 made spell check with newFolder, tutorial-coupled and install and corrected description of the required parameters for Dirichlet and boundaryTypes methods 2012-07-12 21:23:08 +02:00
Klaus Mosthaf
9afcb4ac7f made some more corrections in the getting-started part of the handbook. removed linebreaks 2012-07-12 21:23:08 +02:00
Klaus Mosthaf
c885041050 made some corrections to quickstart-guide, guidelines and install TEX-files 2012-07-12 21:23:08 +02:00
Klaus Mosthaf
e3744d9b1d some corrections in the installation part of the handbook - tbc 2012-07-12 21:23:06 +02:00
Andreas Lauser
200675efd3 tutorial: adapt line numbers so that no fragments boilerplate text appears 
the GPL copyright headers and the doxygen file descriptions are not really
relevant for the tutorials...
 2012-07-12 21:23:06 +02:00
Benjamin Faigle
36806bbc38 added more information to tutorial to ease it for newcomers 2012-07-12 21:23:06 +02:00
David Werner
46117984ca wrong module name 2012-07-12 21:23:06 +02:00
David Werner
ebe73e722e section about application of patches 2012-07-12 21:23:06 +02:00
David Werner
0538826c81 checkout-dumux script 2012-07-12 21:23:04 +02:00
David Werner
61e6113f96 aboveskip option formatting of bash-scripts, more corrected text in install.tex 2012-07-12 21:23:03 +02:00
Melanie Darcis
759f43d877 Typo corrected in tutorials. Reference to tutorial/results in coupled tutorial deleted. 2012-07-12 21:23:03 +02:00
Andreas Lauser
0bf5bdb381 build system: fine-tune the option files and the macros in dumux.m4 
we disable MPI by default as it might result in compilation issues
with newer compilers and the models do not work reliably anyway. also
the conditionals for building the handbook are refined and
summary status messages are added for LaTeX and the handbook.
 2012-07-12 21:23:03 +02:00
David Werner
d54656d075 some more changes 2012-07-12 21:23:03 +02:00
David Werner
0b7a65f8e2 todays work on install file 2012-07-12 21:23:03 +02:00
David Werner
19d75b11c3 tuning of listings style for bash code listings in install.tex 2012-07-12 21:23:03 +02:00
David Werner
29b9ac3251 error in wiki entries 2012-07-12 21:23:03 +02:00
David Werner
d1f8ad24b8 some more changes to installation chapter 2012-07-12 21:23:03 +02:00
David Werner
e24a0da433 bash commands typeset with package listings with a style definition. 2012-07-12 21:23:03 +02:00
David Werner
f7b1f0a25d some more changes for better reading 2012-07-12 21:23:02 +02:00
David Werner
1a6a62d97d Try to explain some things more explicit, worked on structuring though this chapter. Todo shell-commands not within itemize refs more precise. 2012-07-12 21:23:02 +02:00
Philipp Nuske
f07417a5c1 clarified that there is no pdelab tarball 2012-07-12 21:23:02 +02:00
Philipp Nuske
13deae5805 minor changes to install procedure in the handbook 2012-07-12 21:23:01 +02:00
Philipp Nuske
deb5f75bb9 dumux cannnot be build without any options, at least fno-strict-aliasing needs to be handed over. 2012-07-12 21:23:01 +02:00
Andreas Lauser
ed57a85fcf handbook: regenerated model descriptions from the doxygen sources 2012-07-12 21:23:01 +02:00
Philipp Nuske
d4570ed214 boost and autotools belong to the prerequisits not to the additional packages 2012-07-12 21:23:00 +02:00
Philipp Nuske
815ae962dc quenched some typos in the installation guidelines, added needed packages for ubuntu 2012-07-12 21:23:00 +02:00
Benjamin Faigle
be88724d4a no compilation of handbook when --disable-documentation 2012-07-12 21:22:59 +02:00
Katherina Baber
ae7552e59d small changes in box-scheme picture and corresponding svg 2012-07-12 21:22:59 +02:00
Philipp Nuske
3357e88a79 streamlined the formatting of \Dune , \Dune-Root, changed some requesites related stuff 2012-07-12 21:22:58 +02:00
Philipp Nuske
283b4e2115 cleaned Makefile of handbook setdependencies of handbook strait 2012-07-12 21:22:58 +02:00
Benjamin Faigle
0d7f8adc41 adapted tutorial decoupled to unique neumann-BC definition 2012-07-12 21:22:58 +02:00
Benjamin Faigle
f4208fd27b edited decoupled exercices for new material law parameters 2012-07-12 21:22:56 +02:00
Andreas Lauser
66f7ee2564 doc/flowchart: remove the gravest errors 
IMHO it still has some issues with consistency and the level of detail
in some places...
 2012-07-12 21:22:56 +02:00
Karin Erbertseder
af17c21b48 (empty message) 2012-07-12 21:22:56 +02:00
Karin Erbertseder
2ddf3cf14c add a new picture 2012-07-12 21:22:56 +02:00
Karin Erbertseder
6379d8e7f1 added chapter box method 2012-07-12 21:22:56 +02:00
Benjamin Faigle
a89b447312 adapted handbook to bernds changes of tutorial (make it less diffusive) 2012-07-12 21:22:56 +02:00
Philipp Nuske
a666aa9e85 quenched typos, enhanced readability in few places AND updated the "Mother of all Flowcharts" (here to stay) 2012-07-12 21:22:55 +02:00
Melanie Darcis
230042640c extraction rate and simulation times adapted to new problem file 2012-07-12 21:22:54 +02:00
Katherina Baber
36a3ddd149 (empty message) 2012-07-12 21:22:53 +02:00
Benjamin Faigle
9c0c9b9fb0 updated tutorial decoupled, reformulated things and update minor mistakes 2012-07-12 21:22:53 +02:00
Bernd Flemisch
4f0df32508 cleaned up documentation 2012-07-12 21:22:50 +02:00
Melanie Darcis
18ab91054a (empty message) 2012-07-12 21:22:50 +02:00
Melanie Darcis
f3a53e5115 small correction 2012-07-12 21:22:50 +02:00
Melanie Darcis
507c4862b2 new version of tutorial coupled 2012-07-12 21:22:50 +02:00
Andreas Lauser
2849154a60 handbook: factor the design patterns chapter out into a separate file 2012-07-12 21:22:49 +02:00
Andreas Lauser
ecc16cfd72 handbook: make the undefined references go away, finalize on the design patterns and property system chapters 2012-07-12 21:22:49 +02:00
Andreas Lauser
96e5522ad5 introduce new file dumux/common/basicproperties.hh; remove ReferenceElements property from decoupled models; doc 
- now every model type tag should be derived from the NumericModel type
tag.
- instead of retrieving the reference elements from the ReferenceElements property,
  use Dune::GenericReferenceElements<Scalar, dim>
- some improvements for the handbook's design patterns and property system chapeters
 2012-07-12 21:22:48 +02:00
Andreas Lauser
02ddfea028 doc: (almost) finish the design patterns chapter in the handbook 
also remove the ReferenceElements property because changing to the old
DUNE entity numbering would not work anyways...
 2012-07-12 21:22:48 +02:00
Klaus Mosthaf
99e13c14fe made small corrections with the tutorial figures 2012-07-12 21:22:47 +02:00
Andreas Lauser
5fdd83c9be time manager: do not call problem.nextTimeStepSize() at the begining of a new episode 
handbook: some improvements
 2012-07-12 21:22:47 +02:00
Andreas Lauser
a5d28c06f2 logo: do not clip the shadow anymore 
this looks nicer (I hope)
 2012-07-12 21:22:47 +02:00
Andreas Lauser
3d737c2952 handbook: Add automatically extracted model desctiptions for the fully coupled models 
also improve the description of the richards model so that it is ready
for the handbook
 2012-07-12 21:22:46 +02:00
Klaus Mosthaf
e14fa005d3 added some links to the external libraries / modules, needs to be extended 2012-07-12 21:22:45 +02:00
Klaus Mosthaf
98c08883aa some corrections in the installation chapter of the handbook 2012-07-12 21:22:45 +02:00
Klaus Mosthaf
47724af9dc Further work on the installation chapter of the handbook 2012-07-12 21:22:45 +02:00
David Werner
2f9338825f More dependencies mentioned, old parts of Philipp removed. 2012-07-12 21:22:44 +02:00
David Werner
4799cd9410 some minor improvements 2012-07-12 21:22:44 +02:00
David Werner
66ff5a0c87 added hint for external libraries IWS users, Todo: give more precise references where things are documented in Dune and external libaries are found, proof read and english-spell check 2012-07-12 21:22:44 +02:00
David Werner
9ca29df445 typing error in one latex command made it not to build .. fixed 2012-07-12 21:22:44 +02:00
David Werner
e8b64981ae intermediate state, description to iws internal external dune libraries commented out 2012-07-12 21:22:44 +02:00
Klaus Mosthaf
ea2e30538f removed line break 2012-07-12 21:22:44 +02:00
Katherina Baber
dc962a81e8 (empty message) 2012-07-12 21:22:44 +02:00
Klaus Mosthaf
0e0168603a removed line break 2012-07-12 21:22:43 +02:00
Klaus Mosthaf
0cfbf91760 further work on the tutorial_coupled 2012-07-12 21:22:42 +02:00
Philipp Nuske
703a898965 added the information how to get pardiso running on a non-LH2 machine 2012-07-12 21:22:42 +02:00
Klaus Mosthaf
38159bf1f1 further work on the tutorial_coupled exchanged fluidsystem and fluid to twophase water-oil 2012-07-12 21:22:42 +02:00
Nicolas Schwenck
1a2c09a476 extended information about Dune-debug output stream. 2012-07-12 21:22:42 +02:00
Melanie Darcis
0e19686ffe small corrections 2012-07-12 21:22:41 +02:00
Melanie Darcis
c9df44b986 small corrections 2012-07-12 21:22:41 +02:00
Klaus Mosthaf
b442580b0c small changes in the installation chapter 2012-07-12 21:22:41 +02:00