Clearing the auxiliary modules will result in the sparsity pattern being
recomputed. Previously we did this before each nonlinear solve. But for the
master branch the sparsity pattern was only computed once for the whole
simulation.
To get the same behaviour (one sparsity pattern computation) we change the
auxiliary module to include all well perforations that might become active
during the simulation and do this once up front of a simulator run.
Please note that the new matrix entries might also improve convergence for
the ILU if the well is not active.
