/*
Copyright 2023 Inria, Bretagne–Atlantique Research Center
This file is part of the Open Porous Media project (OPM).
OPM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
OPM is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with OPM. If not, see .
*/
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
namespace Opm::DamarisOutput {
DamarisVarXMLAttributes::DamarisVarXMLAttributes()
{
// Additional data needed to complete an XML element
type_ = "scalar"; // This is probably not needed as vector data is defined using
// the Layout paramter. Could be useful for cross checking
visualizable_ = "false";
time_varying_ = "true";
centering_ = "zonal";
}
std::string DamarisVarXMLAttributes::ReturnXMLForVariable()
{
std::string var_str;
using Entry = std::pair;
auto addAttrib = [&var_str](const Entry& entry)
{
if (!entry.second.empty()) {
var_str += fmt::format(" {}=\"{}\"", entry.first, entry.second);
}
};
const auto entries = std::array{
Entry{"layout", this->layout_},
Entry{"mesh", this->mesh_},
Entry{"type", this->type_},
Entry{"visualizable", this->visualizable_},
Entry{"unit", this->unit_},
Entry{"time_varying", this->time_varying_},
Entry{"centering", this->centering_},
Entry{"store", this->store_},
Entry{"select-mem", this->select_mem_},
Entry{"select-file", this->select_file_},
Entry{"select-subset", this->select_subset_}
};
std::for_each(entries.begin(), entries.end(), addAttrib);
return var_str;
}
template
DamarisVar::DamarisVar(int dims,
const std::vector& param_names,
const std::string& variable_name, int rank)
: param_names_(param_names)
, variable_name_(variable_name)
, rank_(rank)
{
dam_err_ = DAMARIS_OK;
assert(param_names_.size() == static_cast(dims));
assert(dims > 0);
has_error_ = false;
// Check that our template type T matches out Damaris XML type
TestType(variable_name);
if (hasError()) {
printError(); // throws a runtime error, with error message from
// dam_err_sstr_
}
current_size_ = 0;
num_params_ = param_names_.size();
param_sizes_.resize(num_params_);
positions_.resize(dims);
data_ptr_ = nullptr;
parameters_set_ = false;
has_error_ = false;
}
template
DamarisVar::DamarisVar(int dims,
const std::vector& param_names,
const std::vector& param_values,
const std::string& variable_name,
int rank)
: param_names_(param_names)
, variable_name_(variable_name)
, rank_(rank)
{
DamarisVar(dims, param_names, variable_name, rank);
setDamarisParameterAndShmem(param_values); // Initialise the memory size in the constructor.
}
template
DamarisVar::~DamarisVar()
{
if (data_ptr_ != nullptr) {
commitVariableDamarisShmem();
clearVariableDamarisShmem();
}
if (this->hasError()) {
printError(); // flush out any error messages
}
}
template
void DamarisVar::printError() const
{
OPM_THROW(std::runtime_error, dam_err_str_);
}
template
std::string DamarisVar::returnXMLForVariable()
{
return fmt::format("", variable_name_,
xml_attributes_.ReturnXMLForVariable());
}
template
void DamarisVar::setDamarisParameter(const std::vector& paramSizeVal)
{
assert(paramSizeVal.size() == static_cast(num_params_));
bool resbool = true;
std::size_t total_size = 1;
for (int varnum = 0; varnum < num_params_; varnum++) {
param_sizes_[varnum] = paramSizeVal[varnum];
total_size *= param_sizes_[varnum];
dam_err_ = damaris_parameter_set(param_names_[varnum].c_str(), ¶mSizeVal[varnum], sizeof(int));
if (dam_err_ != DAMARIS_OK) {
dam_err_str_ += fmt::format(" ERROR rank = {}: class DamarisVar : damaris_parameter_set(\"{}\""
", paramSizeVal, sizeof(int)); Damaris error = {}\n",
rank_, param_names_[varnum], damaris_error_string(dam_err_));
resbool = false;
has_error_ = true;
}
}
if (resbool == true) {
parameterIsSet(); // sets parameters_set_ and gets the size of the
// variables block storage (as number of elemnts)
}
if (total_size > 0) {
current_size_ = total_size;
} else {
dam_err_str_ += fmt::format(" ERROR rank = {}: class DamarisVar::getDataStoreBlockSize() "
"The total size of the variable is 0 - please check "
"input paramSizeVal array.\n", rank_);
has_error_ = true;
}
if (hasError()) {
printError();
}
}
template
void DamarisVar::setDamarisPosition(const std::vector& positionsVals)
{
assert(positionsVals.size() == static_cast(num_params_));
for (int pos_dim = 0; pos_dim < num_params_; pos_dim++) {
positions_[pos_dim] = positionsVals[pos_dim];
}
dam_err_ = damaris_set_position(variable_name_.c_str(), positionsVals.data());
if (dam_err_ != DAMARIS_OK) {
dam_err_str_ += fmt::format(" ERROR rank = {}: class DamarisVar : damaris_set_position(\"{}\""
", positionsVals); Damaris error = {}\n",
rank_, variable_name_, damaris_error_string(dam_err_));
has_error_ = true;
}
if (hasError()) {
printError();
}
}
template
void DamarisVar::setPointersToDamarisShmem()
{
if (parameters_set_ == true) {
// Allocate memory in the shared memory section...
dam_err_ = damaris_alloc(variable_name_.c_str(), (void**)&data_ptr_);
if (dam_err_ != DAMARIS_OK) {
dam_err_str_ += fmt::format(" ERROR rank = {}: class DamarisVar : damaris_alloc(\"{}\""
", (void **) &ret_ptr), Damaris error = {}\n",
rank_, variable_name_, damaris_error_string(dam_err_));
has_error_ = true;
}
} else {
dam_err_ = -1;
dam_err_str_ += fmt::format(" ERROR rank = {}: class DamarisVar : "
"setDamarisParameter() should be "
"called first to define the size of the memory "
"block required for variable: {}\n", rank_, variable_name_);
has_error_ = true;
}
if (hasError()) {
printError();
}
}
template
void DamarisVar::commitVariableDamarisShmem()
{
// Signal to Damaris we are done writing data for this iteration
dam_err_ = damaris_commit(variable_name_.c_str());
if (dam_err_ != DAMARIS_OK) {
dam_err_str_ += fmt::format(" ERROR rank = {}: class DamarisVar : damaris_commit(\"{}\")"
", Damaris error = {}\n",
rank_, variable_name_, damaris_error_string(dam_err_));
has_error_ = true;
}
}
template
void DamarisVar::clearVariableDamarisShmem()
{
// Signal to Damaris it has complete charge of the memory area
dam_err_ = damaris_clear(variable_name_.c_str());
if (dam_err_ != DAMARIS_OK) {
dam_err_str_ += fmt::format(" ERROR rank = {}: class DamarisVar : damaris_clear(\"{}\")"
", Damaris error = {}\n",
rank_, variable_name_, damaris_error_string(dam_err_));
has_error_ = true;
}
data_ptr_ = nullptr;
}
template
bool DamarisVar::TestType(const std::string& variable_name)
{
bool resbool = true;
// This gets the type of the Damaris XML 's
DAMARIS_TYPE_STR vartype;
dam_err_ = damaris_get_type(variable_name.c_str(), &vartype);
if (dam_err_ != DAMARIS_OK) {
dam_err_str_ = fmt::format(" ERROR rank = {}: DamarisVar::DamarisVar () damaris_get_type(\"{}\""
", vartype); Damaris error = {}\n",
rank_, variable_name_, damaris_error_string(dam_err_));
has_error_ = true;
return false;
}
T test_id;
const std::type_info& t1 = typeid(test_id);
auto check = [&variable_name,this](auto td)
{
const std::type_info& t2 = typeid(td);
if (t1 != t2) {
formatTypeError(variable_name, t1.name(), t2.name());
return false;
}
return true;
};
if (vartype == DAMARIS_TYPE_DOUBLE) {
resbool = check(double{});
} else if (vartype == DAMARIS_TYPE_FLOAT) {
resbool = check(float{});
} else if (vartype == DAMARIS_TYPE_CHAR) {
resbool = check(char{});
} else if (vartype == DAMARIS_TYPE_UCHAR) {
using uchar = unsigned char;
resbool = check(uchar{});
} else if (vartype == DAMARIS_TYPE_SHORT) {
resbool = check(short{});
} else if (vartype == DAMARIS_TYPE_USHORT) {
using ushort = unsigned short;
resbool = check(ushort{});
} else if (vartype == DAMARIS_TYPE_INT) {
resbool = check(int{});
} else if (vartype == DAMARIS_TYPE_UINT) {
using uint = unsigned int;
resbool = check(uint{});
} else if (vartype == DAMARIS_TYPE_LONG) {
resbool = check(long{});
} else if (vartype == DAMARIS_TYPE_ULONG) {
using ulong = unsigned long;
resbool = check(ulong{});
} else if (vartype == DAMARIS_TYPE_UNDEFINED) {
dam_err_str_ += fmt::format(" ERROR rank = {}: DamarisVar::DamarisVar():: \"{}\""
" has type DAMARIS_TYPE_UNDEFINED\n", rank_, variable_name);
has_error_ = true;
resbool = false;
} else {
dam_err_str_ += fmt::format(" ERROR rank = {}: DamarisVar::DamarisVar():: \"{}\""
" is not of available type\n", rank_, variable_name);
has_error_ = true;
resbool = false;
}
return resbool;
}
template
void DamarisVar::formatTypeError(const std::string& var_name,
const std::string& type_name1,
const std::string& type_name2)
{
dam_err_str_ += fmt::format(" ERROR rank = {}: DamarisVar::DamarisVar() variable_name: \"{}\""
" The template type of Type of DamarisVar in the code: {}"
" does not match type in XML: {}\n",
rank_, var_name, type_name1, type_name2);
has_error_ = true;
}
template class DamarisVar;
template class DamarisVar;
template class DamarisVar;
} // namespace Opm::DamarisOutput