/* Copyright 2022 SINTEF Digital, Mathematics and Cybernetics. This file is part of the Open Porous Media project (OPM). OPM is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. OPM is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with OPM. If not, see . */ #include #define XSD_CXX11_TEMPLATE_ALIAS 1 #include #include #include #include #include #include namespace Opm::DamarisOutput { std::string initDamarisXmlFile(); // Defined in initDamarisXMLFile.cpp, to avoid messing up this file. void initializeDamaris(MPI_Comm comm, int mpiRank, std::string outputDir, bool enableDamarisOutputCollective) { if (outputDir.empty()) { outputDir = "."; } // Prepare the XML file std::string damaris_config_xml = initDamarisXmlFile(); damaris::model::ModifyModel myMod = damaris::model::ModifyModel(damaris_config_xml); // The map will make it precise the output directory and FileMode (either FilePerCore or Collective storage) // The map file find all occurences of the string in position 1 and repalce it/them with string in position 2 std::map find_replace_map = DamarisKeywords(outputDir, enableDamarisOutputCollective); myMod.RepalceWithRegEx(find_replace_map); std::string damaris_xml_filename_str = outputDir + "/damaris_config.xml"; if (mpiRank == 0) { myMod.SaveXMLStringToFile(damaris_xml_filename_str); } int damaris_err; /* Get the name of the Damaris input file from an environment variable if available */ const char* cs_damaris_xml_file = getenv("FLOW_DAMARIS_XML_FILE"); if (cs_damaris_xml_file != NULL) { std::cout << "INFO: initializing Damaris from environment variable FLOW_DAMARIS_XML_FILE: " << cs_damaris_xml_file << std::endl; damaris_err = damaris_initialize(cs_damaris_xml_file, MPI_COMM_WORLD); if (damaris_err != DAMARIS_OK) { std::cerr << "ERROR: damaris_initialize() error via FLOW_DAMARIS_XML_FILE=" << cs_damaris_xml_file << std::endl; } } else { std::cout << "INFO: initializing Damaris using internally built file:" << damaris_xml_filename_str << std::endl; damaris_err = damaris_initialize(damaris_xml_filename_str.c_str(), comm); if (damaris_err != DAMARIS_OK) { std::cerr << "ERROR: damaris_initialize() error via built file:" << std::endl << myMod.GetConfigString(); } } } void setupDamarisWritingPars(Parallel::Communication comm, const int n_elements_local_grid) { int damaris_err = DAMARIS_OK; const int nranks = comm.size(); const int rank = comm.rank(); std::vector elements_rank_sizes(nranks); // one for each rank -- to be gathered from each client rank std::vector elements_rank_offsets(nranks); // one for each rank, first one 0 -- to be computed - Probably could use MPI_Scan()! // n_elements_local_grid should be the full model size const unsigned long long n_elements_local = n_elements_local_grid; // Left in for debugging, but commented out to avoid spamming the terminal from non-output ranks. // std::cout << "INFO (" << rank << "): n_elements_local_grid = " << n_elements_local_grid << std::endl; // This gets the n_elements_local from all ranks and copies them to a std::vector of all the values on all ranks // (elements_rank_sizes[]). comm.allgather(&n_elements_local, 1, elements_rank_sizes.data()); elements_rank_offsets[0] = 0ULL; // This scan makes the offsets to the start of each ranks grid section if each local grid data was concatenated (in // rank order) for (int t1 = 1; t1 < nranks; t1++) { elements_rank_offsets[t1] = elements_rank_offsets[t1 - 1] + elements_rank_sizes[t1 - 1]; } // find the global/total size unsigned long long n_elements_global_max = elements_rank_offsets[nranks - 1]; n_elements_global_max += elements_rank_sizes[nranks - 1]; // add the last ranks size to the already accumulated offset values if (rank == 0) { OpmLog::debug(fmt::format("In setupDamarisWritingPars(): n_elements_global_max = {}", n_elements_global_max)); } // Set the paramater so that the Damaris servers can allocate the correct amount of memory for the variabe // Damaris parameters only support int data types. This will limit models to be under size of 2^32-1 elements // ToDo: Do we need to check that local ranks are 0 based ? int temp_int = static_cast(elements_rank_sizes[rank]); damaris_err = damaris_parameter_set("n_elements_local", &temp_int, sizeof(int)); if (damaris_err != DAMARIS_OK && rank == 0) { OpmLog::error("Damaris library produced an error result for " "damaris_parameter_set(\"n_elements_local\", &temp_int, sizeof(int));"); } // Damaris parameters only support int data types. This will limit models to be under size of 2^32-1 elements // ToDo: Do we need to check that n_elements_global_max will fit in a C int type (INT_MAX) temp_int = static_cast(n_elements_global_max); damaris_err = damaris_parameter_set("n_elements_total", &temp_int, sizeof(int)); if (damaris_err != DAMARIS_OK && rank == 0) { OpmLog::error("Damaris library produced an error result for " "damaris_parameter_set(\"n_elements_total\", &temp_int, sizeof(int));"); } // Use damaris_set_position to set the offset in the global size of the array. // This is used so that output functionality (e.g. HDF5Store) knows global offsets of the data of the ranks int64_t temp_int64_t[1]; temp_int64_t[0] = static_cast(elements_rank_offsets[rank]); damaris_err = damaris_set_position("PRESSURE", temp_int64_t); if (damaris_err != DAMARIS_OK && rank == 0) { OpmLog::error("Damaris library produced an error result for " "damaris_set_position(\"PRESSURE\", temp_int64_t);"); } damaris_err = damaris_set_position("GLOBAL_CELL_INDEX", temp_int64_t); if (damaris_err != DAMARIS_OK && rank == 0) { OpmLog::error("Damaris library produced an error result for " "damaris_set_position(\"GLOBAL_CELL_INDEX\", temp_int64_t);"); } } } // namespace Opm::DamarisOutput