mirror of
https://github.com/OPM/opm-simulators.git
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770 lines
27 KiB
C++
770 lines
27 KiB
C++
// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
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// vi: set et ts=4 sw=4 sts=4:
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/*
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This file is part of the Open Porous Media project (OPM).
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OPM is free software: you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 2 of the License, or
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(at your option) any later version.
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OPM is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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along with OPM. If not, see <http://www.gnu.org/licenses/>.
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Consult the COPYING file in the top-level source directory of this
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module for the precise wording of the license and the list of
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copyright holders.
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*/
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#ifndef EWOMS_COLLECT_TO_IO_RANK_HH
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#define EWOMS_COLLECT_TO_IO_RANK_HH
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#include <opm/output/data/Cells.hpp>
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#include <opm/output/data/Solution.hpp>
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#include <opm/output/data/Wells.hpp>
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#include <opm/output/data/Groups.hpp>
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#include <opm/grid/common/p2pcommunicator.hh>
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#include <dune/grid/utility/persistentcontainer.hh>
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#include <dune/grid/common/gridenums.hh>
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#include <opm/parser/eclipse/EclipseState/EclipseState.hpp>
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#include <opm/parser/eclipse/EclipseState/Grid/EclipseGrid.hpp>
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#include <opm/material/common/Exceptions.hpp>
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#include <opm/material/common/Unused.hpp>
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#include <dune/grid/common/mcmgmapper.hh>
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#include <stdexcept>
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namespace Opm {
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template <class Vanguard>
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class CollectDataToIORank
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{
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public:
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typedef typename Vanguard::Grid Grid;
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typedef typename Grid::CollectiveCommunication CollectiveCommunication;
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// global id
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class GlobalCellIndex
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{
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int globalId_;
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int localIndex_;
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bool isInterior_;
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public:
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GlobalCellIndex()
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: globalId_(-1)
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, localIndex_(-1)
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, isInterior_(true)
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{}
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void setGhost()
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{ isInterior_ = false; }
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void setId(int globalId)
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{ globalId_ = globalId; }
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void setIndex(int localIndex)
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{ localIndex_ = localIndex; }
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int localIndex () const
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{ return localIndex_; }
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int id () const
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{ return globalId_; }
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bool isInterior() const
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{ return isInterior_; }
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};
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typedef typename Dune::PersistentContainer<Grid, GlobalCellIndex> GlobalIndexContainer;
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static const int dimension = Grid::dimension;
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typedef typename Grid::LeafGridView GridView;
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typedef GridView AllGridView;
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typedef Dune::Point2PointCommunicator<Dune::SimpleMessageBuffer> P2PCommunicatorType;
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typedef typename P2PCommunicatorType::MessageBufferType MessageBufferType;
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typedef std::vector<GlobalCellIndex> LocalIndexMapType;
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typedef std::vector<int> IndexMapType;
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typedef std::vector<IndexMapType> IndexMapStorageType;
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class DistributeIndexMapping : public P2PCommunicatorType::DataHandleInterface
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{
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protected:
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const std::vector<int>& distributedGlobalIndex_;
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IndexMapType& localIndexMap_;
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IndexMapStorageType& indexMaps_;
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std::map<int, int> globalPosition_;
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std::set<int>& recv_;
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std::vector<int>& ranks_;
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public:
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DistributeIndexMapping(const std::vector<int>& globalIndex,
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const std::vector<int>& distributedGlobalIndex,
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IndexMapType& localIndexMap,
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IndexMapStorageType& indexMaps,
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std::vector<int>& ranks,
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std::set<int>& recv,
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bool isIORank)
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: distributedGlobalIndex_(distributedGlobalIndex)
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, localIndexMap_(localIndexMap)
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, indexMaps_(indexMaps)
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, globalPosition_()
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, recv_(recv)
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, ranks_(ranks)
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{
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size_t size = globalIndex.size();
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// create mapping globalIndex --> localIndex
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if ( isIORank ) // ioRank
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for (size_t index = 0; index < size; ++index)
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globalPosition_.insert(std::make_pair(globalIndex[index], index));
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// we need to create a mapping from local to global
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if (!indexMaps_.empty()) {
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if (isIORank)
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ranks_.resize(size, -1);
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// for the ioRank create a localIndex to index in global state map
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IndexMapType& indexMap = indexMaps_.back();
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size_t localSize = localIndexMap_.size();
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indexMap.resize(localSize);
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for (size_t i=0; i<localSize; ++i)
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{
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int id = distributedGlobalIndex_[localIndexMap_[i]];
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indexMap[i] = id;
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}
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}
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}
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~DistributeIndexMapping()
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{
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if (!indexMaps_.size())
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return;
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if ( ranks_.size() )
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{
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auto rankIt = recv_.begin();
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// translate index maps from global cartesian to index
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for (auto& indexMap: indexMaps_)
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{
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int rank = 0;
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if (rankIt != recv_.end())
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rank = *rankIt;
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for (auto&& entry: indexMap)
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{
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auto candidate = globalPosition_.find(entry);
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assert(candidate != globalPosition_.end());
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entry = candidate->second;
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// Using max should be backwards compatible
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ranks_[entry] = std::max(ranks_[entry], rank);
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}
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if (rankIt != recv_.end())
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++rankIt;
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}
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#ifndef NDEBUG
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for (const auto& rank: ranks_)
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assert(rank>=0);
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#endif
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}
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}
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void pack(int link, MessageBufferType& buffer)
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{
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// we should only get one link
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if (link != 0)
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throw std::logic_error("link in method pack is not 0 as execpted");
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// pack all interior global cell id's
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int size = localIndexMap_.size();
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buffer.write(size);
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for (int index = 0; index < size; ++index) {
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int globalIdx = distributedGlobalIndex_[localIndexMap_[index]];
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buffer.write(globalIdx);
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}
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}
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void unpack(int link, MessageBufferType& buffer)
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{
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// get index map for current link
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IndexMapType& indexMap = indexMaps_[link];
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assert(!globalPosition_.empty());
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// unpack all interior global cell id's
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int numCells = 0;
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buffer.read(numCells);
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indexMap.resize(numCells);
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for (int index = 0; index < numCells; ++index) {
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buffer.read(indexMap[index]);
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}
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}
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};
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/// \brief Communication handle to scatter the global index
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template<class EquilMapper, class Mapper>
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class ElementIndexScatterHandle
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{
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public:
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ElementIndexScatterHandle(const EquilMapper& sendMapper, const Mapper& recvMapper, std::vector<int>& elementIndices)
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: sendMapper_(sendMapper), recvMapper_(recvMapper), elementIndices_(elementIndices)
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{}
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using DataType = int;
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bool fixedsize(int /*dim*/, int /*codim*/)
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{
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return true;
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}
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template<class T>
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std::size_t size(const T&)
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{
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return 1;
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}
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template<class B, class T>
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void gather(B& buffer, const T& t)
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{
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buffer.write(sendMapper_.index(t));
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}
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template<class B, class T>
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void scatter(B& buffer, const T& t, std::size_t)
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{
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buffer.read(elementIndices_[recvMapper_.index(t)]);
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}
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bool contains(int dim, int codim)
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{
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return dim==3 && codim==0;
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}
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private:
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const EquilMapper& sendMapper_;
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const Mapper& recvMapper_;
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std::vector<int>& elementIndices_;
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};
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/// \brief Communication handle to scatter the global index
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template<class Mapper>
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class ElementIndexHandle
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{
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public:
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ElementIndexHandle(const Mapper& mapper, std::vector<int>& elementIndices)
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: mapper_(mapper), elementIndices_(elementIndices)
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{}
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using DataType = int;
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bool fixedsize(int /*dim*/, int /*codim*/)
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{
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return true;
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}
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template<class T>
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std::size_t size(const T&)
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{
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return 1;
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}
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template<class B, class T>
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void gather(B& buffer, const T& t)
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{
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buffer.write(elementIndices_[mapper_.index(t)]);
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}
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template<class B, class T>
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void scatter(B& buffer, const T& t, std::size_t)
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{
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buffer.read(elementIndices_[mapper_.index(t)]);
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}
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bool contains(int dim, int codim)
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{
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return dim==3 && codim==0;
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}
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private:
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const Mapper& mapper_;
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std::vector<int>& elementIndices_;
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};
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enum { ioRank = 0 };
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static const bool needsReordering =
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!std::is_same<typename Vanguard::Grid, typename Vanguard::EquilGrid>::value;
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CollectDataToIORank(const Vanguard& vanguard)
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: toIORankComm_()
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{
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// index maps only have to be build when reordering is needed
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if (!needsReordering && !isParallel())
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return;
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const CollectiveCommunication& comm = vanguard.grid().comm();
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{
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std::set<int> send, recv;
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typedef typename Vanguard::EquilGrid::LeafGridView EquilGridView;
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typedef typename Vanguard::GridView LocalGridView;
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const LocalGridView localGridView = vanguard.gridView();
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typedef Dune::MultipleCodimMultipleGeomTypeMapper<LocalGridView> ElementMapper;
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ElementMapper elemMapper(localGridView, Dune::mcmgElementLayout());
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localIdxToGlobalIdx_.resize(localGridView.size(0), -1);
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// the I/O rank receives from all other ranks
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if (isIORank()) {
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// We need a mapping from local to global grid, here we
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// use equilGrid which represents a view on the global grid
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// reserve memory
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const size_t globalSize = vanguard.equilGrid().leafGridView().size(0);
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globalCartesianIndex_.resize(globalSize, -1);
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const EquilGridView equilGridView = vanguard.equilGrid().leafGridView();
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typedef Dune::MultipleCodimMultipleGeomTypeMapper<EquilGridView> EquilElementMapper;
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EquilElementMapper equilElemMapper(equilGridView, Dune::mcmgElementLayout());
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// Scatter the global index to local index for lookup during restart
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ElementIndexScatterHandle<EquilElementMapper,ElementMapper> handle(equilElemMapper, elemMapper, localIdxToGlobalIdx_);
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vanguard.grid().scatterData(handle);
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// loop over all elements (global grid) and store Cartesian index
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auto elemIt = vanguard.equilGrid().leafGridView().template begin<0>();
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const auto& elemEndIt = vanguard.equilGrid().leafGridView().template end<0>();
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for (; elemIt != elemEndIt; ++elemIt) {
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int elemIdx = equilElemMapper.index(*elemIt);
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int cartElemIdx = vanguard.equilCartesianIndexMapper().cartesianIndex(elemIdx);
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globalCartesianIndex_[elemIdx] = cartElemIdx;
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}
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for (int i = 0; i < comm.size(); ++i) {
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if (i != ioRank)
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recv.insert(i);
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}
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}
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else
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{
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// all other simply send to the I/O rank
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send.insert(ioRank);
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// Scatter the global index to local index for lookup during restart
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// This is a bit hacky since the type differs from the iorank.
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// But should work since we only receive, i.e. use the second parameter.
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ElementIndexScatterHandle<ElementMapper, ElementMapper> handle(elemMapper, elemMapper,
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localIdxToGlobalIdx_);
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vanguard.grid().scatterData(handle);
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}
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// Sync the global element indices
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ElementIndexHandle<ElementMapper> handle(elemMapper, localIdxToGlobalIdx_);
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vanguard.grid().communicate(handle, Dune::InteriorBorder_All_Interface,
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Dune::ForwardCommunication);
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localIndexMap_.clear();
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const size_t gridSize = vanguard.grid().size(0);
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localIndexMap_.reserve(gridSize);
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// store the local Cartesian index
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IndexMapType distributedCartesianIndex;
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distributedCartesianIndex.resize(gridSize, -1);
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// A mapping for the whole grid (including the ghosts) is needed for restarts
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auto eIt = localGridView.template begin<0>();
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const auto& eEndIt = localGridView.template end<0>();
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for (; eIt != eEndIt; ++eIt) {
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const auto element = *eIt;
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int elemIdx = elemMapper.index(element);
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distributedCartesianIndex[elemIdx] = vanguard.cartesianIndex(elemIdx);
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// only store interior element for collection
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//assert(element.partitionType() == Dune::InteriorEntity);
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localIndexMap_.push_back(elemIdx);
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}
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// insert send and recv linkage to communicator
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toIORankComm_.insertRequest(send, recv);
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// need an index map for each rank
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indexMaps_.clear();
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indexMaps_.resize(comm.size());
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// distribute global id's to io rank for later association of dof's
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DistributeIndexMapping distIndexMapping(globalCartesianIndex_,
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distributedCartesianIndex,
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localIndexMap_,
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indexMaps_,
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globalRanks_,
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recv,
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isIORank());
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toIORankComm_.exchange(distIndexMapping);
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}
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}
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class PackUnPackCellData : public P2PCommunicatorType::DataHandleInterface
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{
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const Opm::data::Solution& localCellData_;
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Opm::data::Solution& globalCellData_;
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const IndexMapType& localIndexMap_;
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const IndexMapStorageType& indexMaps_;
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public:
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PackUnPackCellData(const Opm::data::Solution& localCellData,
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Opm::data::Solution& globalCellData,
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const IndexMapType& localIndexMap,
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const IndexMapStorageType& indexMaps,
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size_t globalSize,
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bool isIORank)
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: localCellData_(localCellData)
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, globalCellData_(globalCellData)
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, localIndexMap_(localIndexMap)
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, indexMaps_(indexMaps)
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{
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if (isIORank) {
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// add missing data to global cell data
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for (const auto& pair : localCellData_) {
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const std::string& key = pair.first;
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std::size_t containerSize = globalSize;
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auto OPM_OPTIM_UNUSED ret = globalCellData_.insert(key, pair.second.dim,
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std::vector<double>(containerSize),
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pair.second.target);
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assert(ret.second);
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}
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MessageBufferType buffer;
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pack(0, buffer);
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// the last index map is the local one
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doUnpack(indexMaps.back(), buffer);
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}
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}
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// pack all data associated with link
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void pack(int link, MessageBufferType& buffer)
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{
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// we should only get one link
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if (link != 0)
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throw std::logic_error("link in method pack is not 0 as expected");
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// write all cell data registered in local state
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for (const auto& pair : localCellData_) {
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const auto& data = pair.second.data;
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// write all data from local data to buffer
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write(buffer, localIndexMap_, data);
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}
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}
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void doUnpack(const IndexMapType& indexMap, MessageBufferType& buffer)
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{
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// we loop over the data as
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// its order governs the order the data got received.
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for (auto& pair : localCellData_) {
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const std::string& key = pair.first;
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auto& data = globalCellData_.data(key);
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//write all data from local cell data to buffer
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read(buffer, indexMap, data);
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}
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}
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// unpack all data associated with link
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void unpack(int link, MessageBufferType& buffer)
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{ doUnpack(indexMaps_[link], buffer); }
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protected:
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template <class Vector>
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void write(MessageBufferType& buffer,
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const IndexMapType& localIndexMap,
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const Vector& vector,
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unsigned int offset = 0,
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unsigned int stride = 1) const
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{
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unsigned int size = localIndexMap.size();
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buffer.write(size);
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assert(vector.size() >= stride * size);
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for (unsigned int i=0; i<size; ++i)
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{
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unsigned int index = localIndexMap[i] * stride + offset;
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assert(index < vector.size());
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buffer.write(vector[index]);
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}
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}
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template <class Vector>
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void read(MessageBufferType& buffer,
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const IndexMapType& indexMap,
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Vector& vector,
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unsigned int offset = 0,
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unsigned int stride = 1) const
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{
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unsigned int size = 0;
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buffer.read(size);
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assert(size == indexMap.size());
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for (unsigned int i=0; i<size; ++i) {
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unsigned int index = indexMap[i] * stride + offset;
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assert(index < vector.size());
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buffer.read(vector[index]);
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}
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}
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};
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class PackUnPackWellData : public P2PCommunicatorType::DataHandleInterface
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{
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const Opm::data::Wells& localWellData_;
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Opm::data::Wells& globalWellData_;
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public:
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PackUnPackWellData(const Opm::data::Wells& localWellData,
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Opm::data::Wells& globalWellData,
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bool isIORank)
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: localWellData_(localWellData)
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, globalWellData_(globalWellData)
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{
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if (isIORank) {
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MessageBufferType buffer;
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pack(0, buffer);
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// pass a dummy_link to satisfy virtual class
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int dummyLink = -1;
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unpack(dummyLink, buffer);
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}
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}
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// pack all data associated with link
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void pack(int link, MessageBufferType& buffer)
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{
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// we should only get one link
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if (link != 0)
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throw std::logic_error("link in method pack is not 0 as expected");
|
|
|
|
localWellData_.write(buffer);
|
|
}
|
|
|
|
// unpack all data associated with link
|
|
void unpack(int /*link*/, MessageBufferType& buffer)
|
|
{ globalWellData_.read(buffer); }
|
|
|
|
};
|
|
|
|
class PackUnPackGroupData : public P2PCommunicatorType::DataHandleInterface
|
|
{
|
|
const Opm::data::Group& localGroupData_;
|
|
Opm::data::Group& globalGroupData_;
|
|
|
|
public:
|
|
PackUnPackGroupData(const Opm::data::Group& localGroupData,
|
|
Opm::data::Group& globalGroupData,
|
|
bool isIORank)
|
|
: localGroupData_(localGroupData)
|
|
, globalGroupData_(globalGroupData)
|
|
{
|
|
if (isIORank) {
|
|
MessageBufferType buffer;
|
|
pack(0, buffer);
|
|
|
|
// pass a dummy_link to satisfy virtual class
|
|
int dummyLink = -1;
|
|
unpack(dummyLink, buffer);
|
|
}
|
|
}
|
|
|
|
// pack all data associated with link
|
|
void pack(int link, MessageBufferType& buffer)
|
|
{
|
|
// we should only get one link
|
|
if (link != 0)
|
|
throw std::logic_error("link in method pack is not 0 as expected");
|
|
|
|
// write all group data
|
|
localGroupData_.write(buffer);
|
|
}
|
|
|
|
// unpack all data associated with link
|
|
void unpack(int /*link*/, MessageBufferType& buffer)
|
|
{ globalGroupData_.read(buffer); }
|
|
|
|
};
|
|
|
|
|
|
class PackUnPackBlockData : public P2PCommunicatorType::DataHandleInterface
|
|
{
|
|
const std::map<std::pair<std::string, int>, double>& localBlockData_;
|
|
std::map<std::pair<std::string, int>, double>& globalBlockValues_;
|
|
|
|
public:
|
|
PackUnPackBlockData(const std::map<std::pair<std::string, int>, double>& localBlockData,
|
|
std::map<std::pair<std::string, int>, double>& globalBlockValues,
|
|
bool isIORank)
|
|
: localBlockData_(localBlockData)
|
|
, globalBlockValues_(globalBlockValues)
|
|
{
|
|
if (isIORank) {
|
|
MessageBufferType buffer;
|
|
pack(0, buffer);
|
|
|
|
// pass a dummyLink to satisfy virtual class
|
|
int dummyLink = -1;
|
|
unpack(dummyLink, buffer);
|
|
}
|
|
}
|
|
|
|
// pack all data associated with link
|
|
void pack(int link, MessageBufferType& buffer)
|
|
{
|
|
// we should only get one link
|
|
if (link != 0)
|
|
throw std::logic_error("link in method pack is not 0 as expected");
|
|
|
|
// write all block data
|
|
unsigned int size = localBlockData_.size();
|
|
buffer.write(size);
|
|
for (const auto& map : localBlockData_) {
|
|
buffer.write(map.first.first);
|
|
buffer.write(map.first.second);
|
|
buffer.write(map.second);
|
|
}
|
|
}
|
|
|
|
// unpack all data associated with link
|
|
void unpack(int /*link*/, MessageBufferType& buffer)
|
|
{
|
|
// read all block data
|
|
unsigned int size = 0;
|
|
buffer.read(size);
|
|
for (size_t i = 0; i < size; ++i) {
|
|
std::string name;
|
|
int idx;
|
|
double data;
|
|
buffer.read(name);
|
|
buffer.read(idx);
|
|
buffer.read(data);
|
|
globalBlockValues_[std::make_pair(name, idx)] = data;
|
|
}
|
|
}
|
|
|
|
};
|
|
|
|
// gather solution to rank 0 for EclipseWriter
|
|
void collect(const Opm::data::Solution& localCellData,
|
|
const std::map<std::pair<std::string, int>, double>& localBlockData,
|
|
const Opm::data::Wells& localWellData,
|
|
const Opm::data::Group& localGroupData)
|
|
{
|
|
globalCellData_ = {};
|
|
globalBlockData_.clear();
|
|
globalWellData_.clear();
|
|
globalGroupData_.clear();
|
|
|
|
// index maps only have to be build when reordering is needed
|
|
if(!needsReordering && !isParallel())
|
|
return;
|
|
|
|
// this also packs and unpacks the local buffers one ioRank
|
|
PackUnPackCellData
|
|
packUnpackCellData(localCellData,
|
|
globalCellData_,
|
|
localIndexMap_,
|
|
indexMaps_,
|
|
numCells(),
|
|
isIORank());
|
|
|
|
if (!isParallel())
|
|
// no need to collect anything.
|
|
return;
|
|
|
|
PackUnPackWellData
|
|
packUnpackWellData(localWellData,
|
|
globalWellData_,
|
|
isIORank());
|
|
|
|
PackUnPackGroupData
|
|
packUnpackGroupData(localGroupData,
|
|
globalGroupData_,
|
|
isIORank());
|
|
|
|
|
|
PackUnPackBlockData
|
|
packUnpackBlockData(localBlockData,
|
|
globalBlockData_,
|
|
isIORank());
|
|
|
|
toIORankComm_.exchange(packUnpackCellData);
|
|
toIORankComm_.exchange(packUnpackWellData);
|
|
toIORankComm_.exchange(packUnpackGroupData);
|
|
toIORankComm_.exchange(packUnpackBlockData);
|
|
|
|
|
|
|
|
#ifndef NDEBUG
|
|
// mkae sure every process is on the same page
|
|
toIORankComm_.barrier();
|
|
#endif
|
|
}
|
|
|
|
const std::map<std::pair<std::string, int>, double>& globalBlockData() const
|
|
{ return globalBlockData_; }
|
|
|
|
const Opm::data::Solution& globalCellData() const
|
|
{ return globalCellData_; }
|
|
|
|
const Opm::data::Wells& globalWellData() const
|
|
{ return globalWellData_; }
|
|
|
|
const Opm::data::Group& globalGroupData() const
|
|
{ return globalGroupData_; }
|
|
|
|
bool isIORank() const
|
|
{ return toIORankComm_.rank() == ioRank; }
|
|
|
|
bool isParallel() const
|
|
{ return toIORankComm_.size() > 1; }
|
|
|
|
int localIdxToGlobalIdx(unsigned localIdx) const
|
|
{
|
|
if (!isParallel())
|
|
return localIdx;
|
|
|
|
if (localIdxToGlobalIdx_.empty())
|
|
throw std::logic_error("index map is not created on this rank");
|
|
|
|
if (localIdx > localIdxToGlobalIdx_.size())
|
|
throw std::logic_error("local index is outside map range");
|
|
|
|
return localIdxToGlobalIdx_[localIdx];
|
|
}
|
|
|
|
size_t numCells () const
|
|
{ return globalCartesianIndex_.size(); }
|
|
|
|
const std::vector<int>& globalRanks() const
|
|
{ return globalRanks_; }
|
|
|
|
bool isGlobalIdxOnThisRank(unsigned globalIdx) const
|
|
{
|
|
if (!isParallel())
|
|
return true;
|
|
|
|
if (localIdxToGlobalIdx_.empty())
|
|
throw std::logic_error("index map is not created on this rank");
|
|
|
|
return std::find(localIdxToGlobalIdx_.begin(), localIdxToGlobalIdx_.end(), globalIdx) != localIdxToGlobalIdx_.end();
|
|
}
|
|
|
|
protected:
|
|
P2PCommunicatorType toIORankComm_;
|
|
IndexMapType globalCartesianIndex_;
|
|
IndexMapType localIndexMap_;
|
|
IndexMapStorageType indexMaps_;
|
|
std::vector<int> globalRanks_;
|
|
Opm::data::Solution globalCellData_;
|
|
std::map<std::pair<std::string, int>, double> globalBlockData_;
|
|
Opm::data::Wells globalWellData_;
|
|
Opm::data::Group globalGroupData_;
|
|
std::vector<int> localIdxToGlobalIdx_;
|
|
};
|
|
|
|
} // end namespace Opm
|
|
|
|
#endif
|