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opm-simulators/opm/autodiff/FlowMainEbos.hpp
Arne Morten Kvarving 4945c9b2ed changed: pass the mcmg element layout as a parameter for dune 2.6 
the template parameter is deprecated
2018-01-22 17:25:14 +01:00

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/*
Copyright 2013, 2014, 2015 SINTEF ICT, Applied Mathematics.
Copyright 2014 Dr. Blatt - HPC-Simulation-Software & Services
Copyright 2015 IRIS AS
Copyright 2014 STATOIL ASA.
This file is part of the Open Porous Media project (OPM).
OPM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
OPM is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with OPM. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef OPM_FLOW_MAIN_EBOS_HEADER_INCLUDED
#define OPM_FLOW_MAIN_EBOS_HEADER_INCLUDED
#include <sys/utsname.h>
#include <opm/simulators/ParallelFileMerger.hpp>
#include <opm/simulators/ensureDirectoryExists.hpp>
#include <opm/autodiff/BlackoilModelEbos.hpp>
#include <opm/autodiff/NewtonIterationBlackoilSimple.hpp>
#include <opm/autodiff/NewtonIterationBlackoilCPR.hpp>
#include <opm/autodiff/NewtonIterationBlackoilInterleaved.hpp>
#include <opm/autodiff/MissingFeatures.hpp>
#include <opm/autodiff/moduleVersion.hpp>
#include <opm/autodiff/ExtractParallelGridInformationToISTL.hpp>
#include <opm/autodiff/RedistributeDataHandles.hpp>
#include <opm/autodiff/SimulatorFullyImplicitBlackoilEbos.hpp>
#include <opm/core/props/satfunc/RelpermDiagnostics.hpp>
#include <opm/common/OpmLog/OpmLog.hpp>
#include <opm/common/OpmLog/EclipsePRTLog.hpp>
#include <opm/common/OpmLog/LogUtil.hpp>
#include <opm/parser/eclipse/Deck/Deck.hpp>
#include <opm/parser/eclipse/Parser/Parser.hpp>
#include <opm/parser/eclipse/Parser/ParseContext.hpp>
#include <opm/parser/eclipse/EclipseState/EclipseState.hpp>
#include <opm/parser/eclipse/EclipseState/IOConfig/IOConfig.hpp>
#include <opm/parser/eclipse/EclipseState/InitConfig/InitConfig.hpp>
#include <opm/parser/eclipse/EclipseState/checkDeck.hpp>
#if HAVE_DUNE_FEM
#include <dune/fem/misc/mpimanager.hh>
#else
#include <dune/common/parallel/mpihelper.hh>
#endif
namespace Opm
{
// The FlowMain class is the ebos based black-oil simulator.
template <class TypeTag>
class FlowMainEbos
{
enum FileOutputValue{
//! \brief No output to files.
OUTPUT_NONE = 0,
//! \brief Output only to log files, no eclipse output.
OUTPUT_LOG_ONLY = 1,
//! \brief Output to all files.
OUTPUT_ALL = 3
};
public:
typedef typename GET_PROP(TypeTag, MaterialLaw)::EclMaterialLawManager MaterialLawManager;
typedef typename GET_PROP_TYPE(TypeTag, Simulator) EbosSimulator;
typedef typename GET_PROP_TYPE(TypeTag, ThreadManager) EbosThreadManager;
typedef typename GET_PROP_TYPE(TypeTag, Grid) Grid;
typedef typename GET_PROP_TYPE(TypeTag, GridView) GridView;
typedef typename GET_PROP_TYPE(TypeTag, Problem) Problem;
typedef typename GET_PROP_TYPE(TypeTag, Scalar) Scalar;
typedef typename GET_PROP_TYPE(TypeTag, FluidSystem) FluidSystem;
typedef Opm::SimulatorFullyImplicitBlackoilEbos<TypeTag> Simulator;
typedef typename Simulator::ReservoirState ReservoirState;
typedef typename Simulator::OutputWriter OutputWriter;
/// This is the main function of Flow.
/// It runs a complete simulation, with the given grid and
/// simulator classes, based on user command-line input. The
/// content of this function used to be in the main() function of
/// flow.cpp.
int execute(int argc, char** argv)
{
try {
setupParallelism();
printStartupMessage();
const bool ok = setupParameters(argc, argv);
if (!ok) {
return EXIT_FAILURE;
}
setupEbosSimulator();
setupOutput();
setupLogging();
printPRTHeader();
extractMessages();
runDiagnostics();
writeInit();
setupOutputWriter();
setupLinearSolver();
createSimulator();
// Run.
auto ret = runSimulator();
mergeParallelLogFiles();
return ret;
}
catch (const std::exception &e) {
std::ostringstream message;
message << "Program threw an exception: " << e.what();
if( output_cout_ )
{
// in some cases exceptions are thrown before the logging system is set
// up.
if (OpmLog::hasBackend("STREAMLOG")) {
OpmLog::error(message.str());
}
else {
std::cout << message.str() << "\n";
}
}
return EXIT_FAILURE;
}
}
protected:
void setupParallelism()
{
// determine the rank of the current process and the number of processes
// involved in the simulation. MPI must have already been initialized here.
#if HAVE_MPI
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank_);
int mpi_size;
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
#else
mpi_rank_ = 0;
const int mpi_size = 1;
#endif
output_cout_ = ( mpi_rank_ == 0 );
must_distribute_ = ( mpi_size > 1 );
#ifdef _OPENMP
// OpenMP setup.
if (!getenv("OMP_NUM_THREADS")) {
// Default to at most 4 threads, regardless of
// number of cores (unless ENV(OMP_NUM_THREADS) is defined)
int num_cores = omp_get_num_procs();
int num_threads = std::min(4, num_cores);
omp_set_num_threads(num_threads);
}
// omp_get_num_threads() only works as expected within a parallel region.
const int num_omp_threads = omp_get_max_threads();
if (mpi_size == 1) {
std::cout << "OpenMP using " << num_omp_threads << " threads." << std::endl;
} else {
std::cout << "OpenMP using " << num_omp_threads << " threads on MPI rank " << mpi_rank_ << "." << std::endl;
}
#endif
}
// Print startup message if on output rank.
void printStartupMessage()
{
if (output_cout_) {
const int lineLen = 70;
const std::string version = moduleVersionName();
const std::string banner = "This is flow "+version;
const int bannerPreLen = (lineLen - 2 - banner.size())/2;
const int bannerPostLen = bannerPreLen + (lineLen - 2 - banner.size())%2;
std::cout << "**********************************************************************\n";
std::cout << "* *\n";
std::cout << "*" << std::string(bannerPreLen, ' ') << banner << std::string(bannerPostLen, ' ') << "*\n";
std::cout << "* *\n";
std::cout << "* Flow is a simulator for fully implicit three-phase black-oil flow, *\n";
std::cout << "* including solvent and polymer capabilities. *\n";
std::cout << "* For more information, see http://opm-project.org *\n";
std::cout << "* *\n";
std::cout << "**********************************************************************\n\n";
}
}
// Read parameters, see if a deck was specified on the command line, and if
// it was, insert it into parameters.
// Writes to:
// param_
// Returns true if ok, false if not.
bool setupParameters(int argc, char** argv)
{
param_ = ParameterGroup(argc, argv, false, output_cout_);
// See if a deck was specified on the command line.
if (!param_.unhandledArguments().empty()) {
if (param_.unhandledArguments().size() != 1) {
std::cerr << "You can only specify a single input deck on the command line.\n";
return false;
} else {
const auto casename = this->simulationCaseName( param_.unhandledArguments()[ 0 ] );
param_.insertParameter("deck_filename", casename.string() );
}
}
// We must have an input deck. Grid and props will be read from that.
if (!param_.has("deck_filename")) {
std::cerr << "This program must be run with an input deck.\n"
"Specify the deck filename either\n"
" a) as a command line argument by itself\n"
" b) as a command line parameter with the syntax deck_filename=<path to your deck>, or\n"
" c) as a parameter in a parameter file (.param or .xml) passed to the program.\n";
return false;
}
return true;
}
// Set output_to_files_ and set/create output dir. Write parameter file.
// Writes to:
// output_to_files_
// output_dir_
// Throws std::runtime_error if failed to create (if requested) output dir.
void setupOutput()
{
const std::string output = param_.getDefault("output", std::string("all"));
static std::map<std::string, FileOutputValue> string2OutputEnum =
{ {"none", OUTPUT_NONE },
{"false", OUTPUT_LOG_ONLY },
{"log", OUTPUT_LOG_ONLY },
{"all" , OUTPUT_ALL },
{"true" , OUTPUT_ALL }};
auto converted = string2OutputEnum.find(output);
if ( converted != string2OutputEnum.end() )
{
output_ = string2OutputEnum[output];
}
else
{
std::cerr << "Value " << output <<
" passed to option output was invalid. Using \"all\" instead."
<< std::endl;
}
output_to_files_ = output_cout_ && output_ > OUTPUT_NONE;
// Setup output directory.
auto& ioConfig = eclState().getIOConfig();
// Default output directory is the directory where the deck is found.
const std::string default_output_dir = ioConfig.getOutputDir();
output_dir_ = param_.getDefault("output_dir", default_output_dir);
// Override output directory if user specified.
ioConfig.setOutputDir(output_dir_);
// Write parameters used for later reference. (only if rank is zero)
if (output_to_files_) {
// Create output directory if needed.
ensureDirectoryExists(output_dir_);
// Write simulation parameters.
param_.writeParam(output_dir_ + "/simulation.param");
}
}
// Setup OpmLog backend with output_dir.
void setupLogging()
{
std::string deck_filename = param_.get<std::string>("deck_filename");
// create logFile
using boost::filesystem::path;
path fpath(deck_filename);
std::string baseName;
std::ostringstream debugFileStream;
std::ostringstream logFileStream;
if (boost::to_upper_copy(path(fpath.extension()).string()) == ".DATA") {
baseName = path(fpath.stem()).string();
} else {
baseName = path(fpath.filename()).string();
}
logFileStream << output_dir_ << "/" << baseName;
debugFileStream << output_dir_ << "/" << "." << baseName;
if ( must_distribute_ && mpi_rank_ != 0 )
{
// Added rank to log file for non-zero ranks.
// This prevents message loss.
debugFileStream << "."<< mpi_rank_;
// If the following file appears then there is a bug.
logFileStream << "." << mpi_rank_;
}
logFileStream << ".PRT";
debugFileStream << ".DEBUG";
logFile_ = logFileStream.str();
if( output_ > OUTPUT_NONE)
{
std::shared_ptr<EclipsePRTLog> prtLog = std::make_shared<EclipsePRTLog>(logFile_ , Log::NoDebugMessageTypes, false, output_cout_);
OpmLog::addBackend( "ECLIPSEPRTLOG" , prtLog );
prtLog->setMessageLimiter(std::make_shared<MessageLimiter>());
prtLog->setMessageFormatter(std::make_shared<SimpleMessageFormatter>(false));
}
if( output_ >= OUTPUT_LOG_ONLY && !param_.getDefault("no_debug_log", false) )
{
std::string debugFile = debugFileStream.str();
std::shared_ptr<StreamLog> debugLog = std::make_shared<EclipsePRTLog>(debugFile, Log::DefaultMessageTypes, false, output_cout_);
OpmLog::addBackend( "DEBUGLOG" , debugLog);
}
std::shared_ptr<StreamLog> streamLog = std::make_shared<StreamLog>(std::cout, Log::StdoutMessageTypes);
OpmLog::addBackend( "STREAMLOG", streamLog);
const auto& msgLimits = schedule().getMessageLimits();
const std::map<int64_t, int> limits = {{Log::MessageType::Note, msgLimits.getCommentPrintLimit(0)},
{Log::MessageType::Info, msgLimits.getMessagePrintLimit(0)},
{Log::MessageType::Warning, msgLimits.getWarningPrintLimit(0)},
{Log::MessageType::Error, msgLimits.getErrorPrintLimit(0)},
{Log::MessageType::Problem, msgLimits.getProblemPrintLimit(0)},
{Log::MessageType::Bug, msgLimits.getBugPrintLimit(0)}};
streamLog->setMessageLimiter(std::make_shared<MessageLimiter>(10, limits));
streamLog->setMessageFormatter(std::make_shared<SimpleMessageFormatter>(true));
if ( output_cout_ )
{
// Read Parameters.
OpmLog::debug("\n--------------- Reading parameters ---------------\n");
}
}
void printPRTHeader()
{
// Print header for PRT file.
if ( output_cout_ ) {
const std::string version = moduleVersionName();
const double megabyte = 1024 * 1024;
unsigned num_cpu = std::thread::hardware_concurrency();
struct utsname arch;
const char* user = getlogin();
time_t now = std::time(0);
struct tm tstruct;
char tmstr[80];
tstruct = *localtime(&now);
strftime(tmstr, sizeof(tmstr), "%d-%m-%Y at %X", &tstruct);
const double mem_size = getTotalSystemMemory() / megabyte;
std::ostringstream ss;
ss << "\n\n\n";
ss << " ######## # ###### # #\n";
ss << " # # # # # # \n";
ss << " ##### # # # # # # \n";
ss << " # # # # # # # # \n";
ss << " # ####### ###### # # \n\n";
ss << "Flow is a simulator for fully implicit three-phase black-oil flow,";
ss << " and is part of OPM.\nFor more information visit: http://opm-project.org \n\n";
ss << "Flow Version = " + version + "\n";
if (uname(&arch) == 0) {
ss << "System = " << arch.nodename << " (Number of cores: " << num_cpu;
ss << ", RAM: " << std::fixed << std::setprecision (2) << mem_size << " MB) \n";
ss << "Architecture = " << arch.sysname << " " << arch.machine << " (Release: " << arch.release;
ss << ", Version: " << arch.version << " )\n";
}
if (user) {
ss << "User = " << user << std::endl;
}
ss << "Simulation started on " << tmstr << " hrs\n";
OpmLog::note(ss.str());
}
}
void mergeParallelLogFiles()
{
// force closing of all log files.
OpmLog::removeAllBackends();
if( mpi_rank_ != 0 || !must_distribute_ || !output_to_files_ )
{
return;
}
namespace fs = boost::filesystem;
fs::path output_path(".");
if ( param_.has("output_dir") )
{
output_path = fs::path(output_dir_);
}
fs::path deck_filename(param_.get<std::string>("deck_filename"));
std::for_each(fs::directory_iterator(output_path),
fs::directory_iterator(),
detail::ParallelFileMerger(output_path, deck_filename.stem().string()));
}
void setupEbosSimulator()
{
std::vector<const char*> argv;
argv.push_back("flow_ebos");
std::string deckFileParam("--ecl-deck-file-name=");
deckFileParam += param_.get<std::string>("deck_filename");
argv.push_back(deckFileParam.c_str());
#if defined(_OPENMP)
std::string numThreadsParam("--threads-per-process=");
int numThreads = omp_get_max_threads();
numThreadsParam += std::to_string(numThreads);
argv.push_back(numThreadsParam.c_str());
#endif // defined(_OPENMP)
EbosSimulator::registerParameters();
Ewoms::setupParameters_<TypeTag>(argv.size(), &argv[0]);
EbosThreadManager::init();
ebosSimulator_.reset(new EbosSimulator(/*verbose=*/false));
ebosSimulator_->model().applyInitialSolution();
// Create a grid with a global view.
globalGrid_.reset(new Grid(grid()));
globalGrid_->switchToGlobalView();
try {
if (output_cout_) {
MissingFeatures::checkKeywords(deck());
}
// Possible to force initialization only behavior (NOSIM).
if (param_.has("nosim")) {
const bool nosim = param_.get<bool>("nosim");
auto& ioConfig = eclState().getIOConfig();
ioConfig.overrideNOSIM( nosim );
}
}
catch (const std::invalid_argument& e) {
std::cerr << "Failed to create valid EclipseState object. See logfile: " << logFile_ << std::endl;
std::cerr << "Exception caught: " << e.what() << std::endl;
throw;
}
// Possibly override IOConfig setting (from deck) for how often RESTART files should get written to disk (every N report step)
if (param_.has("output_interval")) {
const int output_interval = param_.get<int>("output_interval");
eclState().getRestartConfig().overrideRestartWriteInterval( size_t( output_interval ) );
}
}
const Deck& deck() const
{ return ebosSimulator_->gridManager().deck(); }
Deck& deck()
{ return ebosSimulator_->gridManager().deck(); }
const EclipseState& eclState() const
{ return ebosSimulator_->gridManager().eclState(); }
EclipseState& eclState()
{ return ebosSimulator_->gridManager().eclState(); }
const Schedule& schedule() const
{ return ebosSimulator_->gridManager().schedule(); }
const SummaryConfig& summaryConfig() const
{ return ebosSimulator_->gridManager().summaryConfig(); }
// Extract messages from parser.
// Writes to:
// OpmLog singleton.
void extractMessages()
{
if ( !output_cout_ )
{
return;
}
auto extractMessage = [this](const Message& msg) {
auto log_type = this->convertMessageType(msg.mtype);
const auto& location = msg.location;
if (location) {
OpmLog::addMessage(log_type, Log::fileMessage(location.filename, location.lineno, msg.message));
} else {
OpmLog::addMessage(log_type, msg.message);
}
};
// Extract messages from Deck.
for(const auto& msg : deck().getMessageContainer()) {
extractMessage(msg);
}
// Extract messages from EclipseState.
for (const auto& msg : eclState().getMessageContainer()) {
extractMessage(msg);
}
}
// Run diagnostics.
// Writes to:
// OpmLog singleton.
void runDiagnostics()
{
if( ! output_cout_ )
{
return;
}
// Run relperm diagnostics
RelpermDiagnostics diagnostic;
diagnostic.diagnosis(eclState(), deck(), this->grid());
}
void writeInit()
{
bool output = ( output_ > OUTPUT_LOG_ONLY );
bool output_ecl = param_.getDefault("output_ecl", true);
auto int_vectors = computeCellRanks(output, output_ecl);
if( output && output_ecl && grid().comm().rank() == 0 )
{
exportNncStructure_();
const EclipseGrid& inputGrid = eclState().getInputGrid();
eclIO_.reset(new EclipseIO(eclState(),
UgGridHelpers::createEclipseGrid( this->globalGrid() , inputGrid ),
schedule(),
summaryConfig()));
eclIO_->writeInitial(computeLegacySimProps_(), int_vectors, nnc_);
Problem& problem = ebosProblem();
problem.setEclIO(std::move(eclIO_));
}
}
// Setup output writer.
// Writes to:
// output_writer_
void setupOutputWriter()
{
// create output writer after grid is distributed, otherwise the parallel output
// won't work correctly since we need to create a mapping from the distributed to
// the global view
output_writer_.reset(new OutputWriter(*ebosSimulator_,
param_));
}
// Run the simulator.
// Returns EXIT_SUCCESS if it does not throw.
int runSimulator()
{
const auto& schedule = this->schedule();
const auto& timeMap = schedule.getTimeMap();
auto& ioConfig = eclState().getIOConfig();
SimulatorTimer simtimer;
// initialize variables
const auto& initConfig = eclState().getInitConfig();
simtimer.init(timeMap, (size_t)initConfig.getRestartStep());
if (!ioConfig.initOnly()) {
if (output_cout_) {
std::string msg;
msg = "\n\n================ Starting main simulation loop ===============\n";
OpmLog::info(msg);
}
SimulatorReport successReport = simulator_->run(simtimer);
SimulatorReport failureReport = simulator_->failureReport();
if (output_cout_) {
std::ostringstream ss;
ss << "\n\n================ End of simulation ===============\n\n";
successReport.reportFullyImplicit(ss, &failureReport);
OpmLog::info(ss.str());
if (param_.anyUnused()) {
// This allows a user to catch typos and misunderstandings in the
// use of simulator parameters.
std::cout << "-------------------- Unused parameters: --------------------\n";
param_.displayUsage();
std::cout << "----------------------------------------------------------------" << std::endl;
}
}
} else {
if (output_cout_) {
std::cout << "\n\n================ Simulation turned off ===============\n" << std::flush;
}
}
return EXIT_SUCCESS;
}
// Setup linear solver.
// Writes to:
// fis_solver_
void setupLinearSolver()
{
typedef typename BlackoilModelEbos<TypeTag> :: ISTLSolverType ISTLSolverType;
extractParallelGridInformationToISTL(grid(), parallel_information_);
fis_solver_.reset( new ISTLSolverType( param_, parallel_information_ ) );
}
/// This is the main function of Flow.
// Create simulator instance.
// Writes to:
// simulator_
void createSimulator()
{
// Create the simulator instance.
simulator_.reset(new Simulator(*ebosSimulator_,
param_,
*fis_solver_,
FluidSystem::enableDissolvedGas(),
FluidSystem::enableVaporizedOil(),
*output_writer_));
}
private:
boost::filesystem::path simulationCaseName( const std::string& casename ) {
namespace fs = boost::filesystem;
const auto exists = []( const fs::path& f ) -> bool {
if( !fs::exists( f ) ) return false;
if( fs::is_regular_file( f ) ) return true;
return fs::is_symlink( f )
&& fs::is_regular_file( fs::read_symlink( f ) );
};
auto simcase = fs::path( casename );
if( exists( simcase ) ) {
return simcase;
}
for( const auto& ext : { std::string("data"), std::string("DATA") } ) {
if( exists( simcase.replace_extension( ext ) ) ) {
return simcase;
}
}
throw std::invalid_argument( "Cannot find input case " + casename );
}
unsigned long long getTotalSystemMemory()
{
long pages = sysconf(_SC_PHYS_PAGES);
long page_size = sysconf(_SC_PAGE_SIZE);
return pages * page_size;
}
int64_t convertMessageType(const Message::type& mtype)
{
switch (mtype) {
case Message::type::Debug:
return Log::MessageType::Debug;
case Message::type::Info:
return Log::MessageType::Info;
case Message::type::Warning:
return Log::MessageType::Warning;
case Message::type::Error:
return Log::MessageType::Error;
case Message::type::Problem:
return Log::MessageType::Problem;
case Message::type::Bug:
return Log::MessageType::Bug;
case Message::type::Note:
return Log::MessageType::Note;
}
throw std::logic_error("Invalid messages type!\n");
}
Grid& grid()
{ return ebosSimulator_->gridManager().grid(); }
const Grid& globalGrid()
{ return *globalGrid_; }
Problem& ebosProblem()
{ return ebosSimulator_->problem(); }
const Problem& ebosProblem() const
{ return ebosSimulator_->problem(); }
std::shared_ptr<MaterialLawManager> materialLawManager()
{ return ebosProblem().materialLawManager(); }
Scalar gravity() const
{ return ebosProblem().gravity()[2]; }
std::map<std::string, std::vector<int> > computeCellRanks(bool output, bool output_ecl)
{
std::map<std::string, std::vector<int> > integerVectors;
if( output && output_ecl && grid().comm().size() > 1 )
{
typedef typename Grid::LeafGridView GridView;
#if DUNE_VERSION_NEWER(DUNE_GEOMETRY, 2, 6)
using ElementMapper = Dune::MultipleCodimMultipleGeomTypeMapper<GridView>;
#else
// Get the owner rank number for each cell
using ElementMapper = Dune::MultipleCodimMultipleGeomTypeMapper<GridView, Dune::MCMGElementLayout>;
#endif
using Handle = CellOwnerDataHandle<ElementMapper>;
const Grid& globalGrid = this->globalGrid();
const auto& globalGridView = globalGrid.leafGridView();
#if DUNE_VERSION_NEWER(DUNE_GEOMETRY, 2, 6)
ElementMapper globalMapper(globalGridView, Dune::mcmgElementLayout());
#else
ElementMapper globalMapper(globalGridView);
#endif
const auto globalSize = globalGrid.size(0);
std::vector<int> ranks(globalSize, -1);
Handle handle(globalMapper, ranks);
this->grid().gatherData(handle);
integerVectors.emplace("MPI_RANK", ranks);
}
return integerVectors;
}
data::Solution computeLegacySimProps_()
{
const int* dims = UgGridHelpers::cartDims(grid());
const int globalSize = dims[0]*dims[1]*dims[2];
data::CellData tranx = {UnitSystem::measure::transmissibility, std::vector<double>( globalSize ), data::TargetType::INIT};
data::CellData trany = {UnitSystem::measure::transmissibility, std::vector<double>( globalSize ), data::TargetType::INIT};
data::CellData tranz = {UnitSystem::measure::transmissibility, std::vector<double>( globalSize ), data::TargetType::INIT};
for (size_t i = 0; i < tranx.data.size(); ++i) {
tranx.data[0] = 0.0;
trany.data[0] = 0.0;
tranz.data[0] = 0.0;
}
const Grid& globalGrid = this->globalGrid();
const auto& globalGridView = globalGrid.leafGridView();
typedef typename Grid::LeafGridView GridView;
#if DUNE_VERSION_NEWER(DUNE_GEOMETRY, 2, 6)
typedef Dune::MultipleCodimMultipleGeomTypeMapper<GridView> ElementMapper;
ElementMapper globalElemMapper(globalGridView, Dune::mcmgElementLayout());
#else
typedef Dune::MultipleCodimMultipleGeomTypeMapper<GridView, Dune::MCMGElementLayout> ElementMapper;
ElementMapper globalElemMapper(globalGridView);
#endif
const auto& cartesianCellIdx = globalGrid.globalCell();
const auto* globalTrans = &(ebosSimulator_->gridManager().globalTransmissibility());
if (grid().comm().size() < 2) {
// in the sequential case we must use the transmissibilites defined by
// the problem. (because in the sequential case, the grid manager does
// not compute "global" transmissibilities for performance reasons. in
// the parallel case, the problem's transmissibilities can't be used
// because this object refers to the distributed grid and we need the
// sequential version here.)
globalTrans = &ebosSimulator_->problem().eclTransmissibilities();
}
auto elemIt = globalGridView.template begin</*codim=*/0>();
const auto& elemEndIt = globalGridView.template end</*codim=*/0>();
for (; elemIt != elemEndIt; ++ elemIt) {
const auto& elem = *elemIt;
auto isIt = globalGridView.ibegin(elem);
const auto& isEndIt = globalGridView.iend(elem);
for (; isIt != isEndIt; ++ isIt) {
const auto& is = *isIt;
if (!is.neighbor())
{
continue; // intersection is on the domain boundary
}
unsigned c1 = globalElemMapper.index(is.inside());
unsigned c2 = globalElemMapper.index(is.outside());
if (c1 > c2)
{
continue; // we only need to handle each connection once, thank you.
}
int gc1 = std::min(cartesianCellIdx[c1], cartesianCellIdx[c2]);
int gc2 = std::max(cartesianCellIdx[c1], cartesianCellIdx[c2]);
if (gc2 - gc1 == 1) {
tranx.data[gc1] = globalTrans->transmissibility(c1, c2);
}
if (gc2 - gc1 == dims[0]) {
trany.data[gc1] = globalTrans->transmissibility(c1, c2);
}
if (gc2 - gc1 == dims[0]*dims[1]) {
tranz.data[gc1] = globalTrans->transmissibility(c1, c2);
}
}
}
return {{"TRANX" , tranx},
{"TRANY" , trany} ,
{"TRANZ" , tranz}};
}
void exportNncStructure_()
{
nnc_ = eclState().getInputNNC();
int nx = eclState().getInputGrid().getNX();
int ny = eclState().getInputGrid().getNY();
//int nz = eclState().getInputGrid().getNZ()
const Grid& globalGrid = this->globalGrid();
const auto& globalGridView = globalGrid.leafGridView();
typedef typename Grid::LeafGridView GridView;
#if DUNE_VERSION_NEWER(DUNE_GEOMETRY, 2, 6)
typedef Dune::MultipleCodimMultipleGeomTypeMapper<GridView> ElementMapper;
ElementMapper globalElemMapper(globalGridView, Dune::mcmgElementLayout());
#else
typedef Dune::MultipleCodimMultipleGeomTypeMapper<GridView, Dune::MCMGElementLayout> ElementMapper;
ElementMapper globalElemMapper(globalGridView);
#endif
const auto* globalTrans = &(ebosSimulator_->gridManager().globalTransmissibility());
if (grid().comm().size() < 2) {
// in the sequential case we must use the transmissibilites defined by
// the problem. (because in the sequential case, the grid manager does
// not compute "global" transmissibilities for performance reasons. in
// the parallel case, the problem's transmissibilities can't be used
// because this object refers to the distributed grid and we need the
// sequential version here.)
globalTrans = &ebosSimulator_->problem().eclTransmissibilities();
}
auto elemIt = globalGridView.template begin</*codim=*/0>();
const auto& elemEndIt = globalGridView.template end</*codim=*/0>();
for (; elemIt != elemEndIt; ++ elemIt) {
const auto& elem = *elemIt;
auto isIt = globalGridView.ibegin(elem);
const auto& isEndIt = globalGridView.iend(elem);
for (; isIt != isEndIt; ++ isIt) {
const auto& is = *isIt;
if (!is.neighbor())
{
continue; // intersection is on the domain boundary
}
unsigned c1 = globalElemMapper.index(is.inside());
unsigned c2 = globalElemMapper.index(is.outside());
if (c1 > c2)
{
continue; // we only need to handle each connection once, thank you.
}
// TODO (?): use the cartesian index mapper to make this code work
// with grids other than Dune::CpGrid. The problem is that we need
// the a mapper for the sequential grid, not for the distributed one.
int cc1 = globalGrid.globalCell()[c1];
int cc2 = globalGrid.globalCell()[c2];
if (std::abs(cc1 - cc2) != 1 &&
std::abs(cc1 - cc2) != nx &&
std::abs(cc1 - cc2) != nx*ny)
{
nnc_.addNNC(cc1, cc2, globalTrans->transmissibility(c1, c2));
}
}
}
}
/// Convert saturations from a vector of individual phase saturation vectors
/// to an interleaved format where all values for a given cell come before all
/// values for the next cell, all in a single vector.
template <class FluidSystem>
void convertSats(std::vector<double>& sat_interleaved, const std::vector< std::vector<double> >& sat, const PhaseUsage& pu)
{
assert(sat.size() == 3);
const auto nc = sat[0].size();
const auto np = sat_interleaved.size() / nc;
for (size_t c = 0; c < nc; ++c) {
if ( FluidSystem::phaseIsActive(FluidSystem::oilPhaseIdx)) {
const int opos = pu.phase_pos[BlackoilPhases::Liquid];
const std::vector<double>& sat_p = sat[ FluidSystem::oilPhaseIdx];
sat_interleaved[np*c + opos] = sat_p[c];
}
if ( FluidSystem::phaseIsActive(FluidSystem::waterPhaseIdx)) {
const int wpos = pu.phase_pos[BlackoilPhases::Aqua];
const std::vector<double>& sat_p = sat[ FluidSystem::waterPhaseIdx];
sat_interleaved[np*c + wpos] = sat_p[c];
}
if ( FluidSystem::phaseIsActive(FluidSystem::gasPhaseIdx)) {
const int gpos = pu.phase_pos[BlackoilPhases::Vapour];
const std::vector<double>& sat_p = sat[ FluidSystem::gasPhaseIdx];
sat_interleaved[np*c + gpos] = sat_p[c];
}
}
}
std::unique_ptr<EbosSimulator> ebosSimulator_;
int mpi_rank_ = 0;
bool output_cout_ = false;
FileOutputValue output_ = OUTPUT_ALL;
bool must_distribute_ = false;
ParameterGroup param_;
bool output_to_files_ = false;
std::string output_dir_ = std::string(".");
NNC nnc_;
std::unique_ptr<EclipseIO> eclIO_;
std::unique_ptr<OutputWriter> output_writer_;
boost::any parallel_information_;
std::unique_ptr<NewtonIterationBlackoilInterface> fis_solver_;
std::unique_ptr<Simulator> simulator_;
std::string logFile_;
// Needs to be shared pointer because it gets initialzed before MPI_Init.
std::shared_ptr<Grid> globalGrid_;
};
} // namespace Opm
#endif // OPM_FLOW_MAIN_EBOS_HEADER_INCLUDED
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