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opm-simulators/opm/simulators/utils/initDamarisXmlFile.cpp

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/*
Copyright 2022 2023 Inria, Bretagne–Atlantique Research Center
Copyright 2022 SINTEF Digital, Mathematics and Cybernetics.
This file is part of the Open Porous Media project (OPM).
OPM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
OPM is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with OPM. If not, see <http://www.gnu.org/licenses/>.
*/
#include <string>
namespace Opm::DamarisOutput
{
/*
Below is the XML file for Damaris that is supported by Damaris.
The entries in the map below will be filled by corresponding Damaris
Keywords.
N.B. Ensure all text items that are to be replaced are quoted with double quotes
e.g. unit="_REPLACE_UNIT_"
*not* unit=_REPLACE_UNIT_
*/
std::string initDamarisXmlFile()
{
std::string init_damaris = R"V0G0N(<?xml version="1.0"?>
<simulation name="_SIM_NAME_" language="c" xmlns="http://damaris.gforge.inria.fr/damaris/model">
<architecture>
<domains count="1"/>
<dedicated cores="_DC_REGEX_" nodes="_DN_REGEX_"/>
<buffer name="_SHMEM_NAME_" size="_SHMEM_BUFFER_BYTES_REGEX_" />
<placement />
<queue name="queue" size="300" />
</architecture>
<data>
<parameter name="n_elements_total" type="int" value="1" />
<parameter name="n_elements_local" type="int" value="1" />
<parameter name="n" type="int" value="1" />
<layout name="zonal_layout_usmesh_integer" type="int" dimensions="n_elements_local" global="n_elements_total" comment="For the field data e.g. Pressure" />
<variable name="GLOBAL_CELL_INDEX" layout="zonal_layout_usmesh_integer" type="scalar" visualizable="false" time-varying="false" centering="zonal" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
<layout name="zonal_layout_usmesh" type="double" dimensions="n_elements_local" global="n_elements_total" comment="For the field data e.g. Pressure" />
<variable name="PRESSURE" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="us_mesh" unit="_PRESSURE_UNIT_" centering="zonal" select-file="GLOBAL_CELL_INDEX" store="_MYSTORE_OR_EMPTY_REGEX_" script="_MAKE_AVAILABLE_IN_PYTHON_" />
_MORE_VARIABLES_REGEX_
<variable name="MPI_RANK" layout="zonal_layout_usmesh_integer" type="scalar" visualizable="true" mesh="us_mesh" unit="rank" centering="zonal" store="_MYSTORE_MESH_OR_EMPTY_REGEX_" time-varying="false" select-file="GLOBAL_CELL_INDEX" script="_MAKE_AVAILABLE_IN_PYTHON_" comment="The MPI rank of each cell"/>
<variable name="KRNSW_GO" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="KRNSW_OW" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="PCSWM_GO" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="PCSWM_OW" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="PPCW" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="Bar" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="RS" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="Bar" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" comment="Dissolved Gas units Gas Oil Ratio" />
<variable name="RV" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="Bar" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="SOMAX" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="1OVERBG" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="1OVERBO" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="1OVERBW" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="GASKR" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="GAS_DEN" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="GAS_VISC" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="OILKR" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="OIL_DEN" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="OIL_VISC" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="WATKR" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="WAT_DEN" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="WAT_VISC" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="2FBF" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="4FBF" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="DFBF" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="GCDI" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="GCDM" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="GIP" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="GIPG" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="GIPL" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="GIPR" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="HTOF" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="OIP" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="OIPG" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="OIPL" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="OIPR" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="RPV" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="S36F" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="SEAF" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="SGAS" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="SIP" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="SWAT" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="TFBF" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="WCD" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="WIP" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="WIPG" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="WIPL" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<variable name="WIPR" layout="zonal_layout_usmesh" type="scalar" visualizable="true" mesh="#" unit="" centering="zonal" time-varying="true" select-file="GLOBAL_CELL_INDEX" store="#" script="#" />
<parameter name="n_coords_local" type="int" value="1" />
<layout name="n_coords_layout" type="double" dimensions="n_coords_local" comment="For the individual x, y and z coordinates of the mesh vertices, these values are referenced in the topologies/topo/subelements/connectivity_pg data" />
<group name="coordset/coords/values">
<variable name="x" layout="n_coords_layout" type="scalar" visualizable="false" unit="m" script="_MAKE_AVAILABLE_IN_PYTHON_" time-varying="false" store="_MYSTORE_MESH_OR_EMPTY_REGEX_" />
<variable name="y" layout="n_coords_layout" type="scalar" visualizable="false" unit="m" script="_MAKE_AVAILABLE_IN_PYTHON_" time-varying="false" store="_MYSTORE_MESH_OR_EMPTY_REGEX_" />
<variable name="z" layout="n_coords_layout" type="scalar" visualizable="false" unit="m" script="_MAKE_AVAILABLE_IN_PYTHON_" time-varying="false" store="_MYSTORE_MESH_OR_EMPTY_REGEX_" />
</group>
<parameter name="n_connectivity_ph" type="int" value="1" />
<layout name="n_connections_layout_ph" type="int" dimensions="n_connectivity_ph" comment="Layout for connectivities " />
<parameter name="n_offsets_types_ph" type="int" value="1" />
<layout name="n_offsets_layout_ph" type="int" dimensions="n_offsets_types_ph" comment="Layout for the offsets_ph" />
<layout name="n_types_layout_ph" type="char" dimensions="n_offsets_types_ph" comment="Layout for the types_ph " />
<group name="topologies/topo/elements">
<variable name="connectivity" layout="n_connections_layout_ph" type="scalar" visualizable="false" script="_MAKE_AVAILABLE_IN_PYTHON_" time-varying="false" store="_MYSTORE_MESH_OR_EMPTY_REGEX_" />
<variable name="offsets" layout="n_offsets_layout_ph" type="scalar" visualizable="false" script="_MAKE_AVAILABLE_IN_PYTHON_" time-varying="false" store="_MYSTORE_MESH_OR_EMPTY_REGEX_" />
<variable name="types" layout="n_types_layout_ph" type="scalar" visualizable="false" script="_MAKE_AVAILABLE_IN_PYTHON_" time-varying="false" store="_MYSTORE_MESH_OR_EMPTY_REGEX_" />
</group>
<mesh name="us_mesh" type="unstructured" topology="3" time-varying="false"
comment="This Mesh definition is for connection with Paraview.
This definition references the variables that define an unstructured mesh specified above." >
<coord name="coordset/coords/values/x" unit="m" />
<coord name="coordset/coords/values/y" unit="m" />
<coord name="coordset/coords/values/z" unit="m" />
<vertex_global_id name="#" offset="0" />
<element_offsets name="topologies/topo/elements/offsets" />
<section_types name="topologies/topo/elements/types" />
<section_sizes name="#" />
<section_connectivity name="topologies/topo/elements/connectivity" />
<polyhedral_cell_faces_connectivity name="#" />
<polyhedral_cell_faces_offsets name="#" />
<polyhedral_n_faces_per_cell name="#" />
</mesh>
</data>
<storage>
<store name="MyStore" type="HDF5">
<option key="FileMode">_File_Mode</option>
<option key="XDMFMode">NoIteration</option>
<option key="FilesPath">_PATH_REGEX_/</option>
</store>
</storage>
<scripts>
<_DISABLEPYTHONSTART_pyscript name="PythonScript" file="_PYTHON_SCRIPT_" language="python" frequency="1" scheduler-file="_DASK_SCHEDULER_FILE_" nthreads="0" keep-workers="no" /_DISABLEPYTHONFIN_>
</scripts>
<_DISABLEPARAVIEWSTART_paraview update-frequency="1" write-vtk="0" write-vtk-binary="false" >
<script>_PARAVIEW_PYTHON_SCRIPT_</script>
</paraview _DISABLEPARAVIEWFIN_>
<actions>
</actions>
<log FileName="_PATH_REGEX_/damaris_log/_SIM_NAME_" RotationSize="5" LogFormat="[%TimeStamp%]: %Message%" Flush="_LOG_FLUSH_" LogLevel="_LOG_LEVEL_" />
</simulation>)V0G0N";
return init_damaris;
}
} // namespace Opm::DamarisOutput
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