mirror of
https://github.com/OPM/opm-simulators.git
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8095eb0c48
added access to DUNE mesh geometry and passing through data to Damaris; Updated command line so users can specifiy Python or Paraview script names and other paramaters that control Damaris - Simulation name - Number of dedicated cores or dedicated nodes - Shared memory region size - switch to turn off HDF5 output. - Damaris logging level
86 lines
3.8 KiB
C++
86 lines
3.8 KiB
C++
/*
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Copyright 2022 SINTEF Digital, Mathematics and Cybernetics.
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Copyright 2023 INRIA
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This file is part of the Open Porous Media project (OPM).
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OPM is free software: you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 3 of the License, or
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(at your option) any later version.
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OPM is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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along with OPM. If not, see <http://www.gnu.org/licenses/>.
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*/
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#include <config.h>
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#define XSD_CXX11_TEMPLATE_ALIAS 1
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#include <damaris/model/ModifyModel.hpp>
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#include <opm/simulators/utils/DamarisKeywords.hpp>
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#include <opm/simulators/utils/DamarisOutputModule.hpp>
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#include <opm/simulators/utils/ParallelCommunication.hpp>
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#include <opm/common/OpmLog/OpmLog.hpp>
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#include <fmt/format.h>
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namespace Opm::DamarisOutput
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{
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std::string initDamarisXmlFile(); // Defined in initDamarisXMLFile.cpp, to avoid messing up this file.
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// Initialize Damaris by filling in th XML file and storing it in the chosen directory
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void
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initializeDamaris(MPI_Comm comm, int mpiRank, std::map<std::string, std::string>& find_replace_map )
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{
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int dam_err_;
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/* Get the name of the Damaris input file from an environment variable if available */
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const char* cs_damaris_xml_file = getenv("FLOW_DAMARIS_XML_FILE");
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if (cs_damaris_xml_file != NULL)
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{
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std::cout << "INFO: Initializing Damaris from environment variable FLOW_DAMARIS_XML_FILE: "
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<< cs_damaris_xml_file << std::endl;
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dam_err_ = damaris_initialize(cs_damaris_xml_file, MPI_COMM_WORLD);
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if (dam_err_ != DAMARIS_OK) {
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OpmLog::error(fmt::format("ERORR: damariswriter::initializeDamaris() : ( rank:{}) "
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"damaris_initialize({}, MPI_COMM_WORLD), Damaris Error: {} ",
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mpiRank, cs_damaris_xml_file, damaris_error_string(dam_err_) ));
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}
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} else {
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// Prepare the XML file
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std::string damaris_config_xml = initDamarisXmlFile(); // This is the template for a Damaris XML file
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damaris::model::ModifyModel myMod = damaris::model::ModifyModel(damaris_config_xml);
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// The map will make it precise the output directory and FileMode (either FilePerCore or Collective storage)
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// The map file find all occurences of the string in position 1 and replace it/them with string in position 2
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// std::map<std::string, std::string> find_replace_map = DamarisKeywords(outputDir, enableDamarisOutputCollective);
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myMod.RepalceWithRegEx(find_replace_map);
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std::string outputDir = find_replace_map["_PATH_REGEX_"] ;
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std::string damaris_xml_filename_str = outputDir + "/damaris_config.xml";
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if (mpiRank == 0) {
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myMod.SaveXMLStringToFile(damaris_xml_filename_str);
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}
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std::cout << "INFO: Initializing Damaris using internally built file:" << damaris_xml_filename_str << " (N.B. use FLOW_DAMARIS_XML_FILE to override)" << std::endl;
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dam_err_ = damaris_initialize(damaris_xml_filename_str.c_str(), comm);
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if (dam_err_ != DAMARIS_OK) {
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OpmLog::error(fmt::format("ERORR: damariswriter::initializeDamaris() : ( rank:{}) "
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"damaris_initialize({}, MPI_COMM_WORLD), Damaris Error: {}. Error via OPM internally built file:",
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mpiRank, cs_damaris_xml_file, damaris_error_string(dam_err_) ));
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}
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}
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}
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} // namespace Opm::DamarisOutput
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