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https://github.com/OPM/opm-simulators.git
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138 lines
4.1 KiB
C++
138 lines
4.1 KiB
C++
// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
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// vi: set et ts=4 sw=4 sts=4:
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/*
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This file is part of the Open Porous Media project (OPM).
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OPM is free software: you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 2 of the License, or
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(at your option) any later version.
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OPM is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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along with OPM. If not, see <http://www.gnu.org/licenses/>.
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Consult the COPYING file in the top-level source directory of this
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module for the precise wording of the license and the list of
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copyright holders.
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*/
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#include <config.h>
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#include <opm/simulators/flow/MICPContainer.hpp>
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#include <opm/input/eclipse/Units/UnitSystem.hpp>
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#include <opm/output/data/Solution.hpp>
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#include <algorithm>
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#include <array>
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#include <string>
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#include <tuple>
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namespace Opm {
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template<class Scalar>
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void MICPContainer<Scalar>::
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allocate(const unsigned bufferSize)
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{
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cMicrobes_.resize(bufferSize, 0.0);
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cOxygen_.resize(bufferSize, 0.0);
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cUrea_.resize(bufferSize, 0.0);
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cBiofilm_.resize(bufferSize, 0.0);
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cCalcite_.resize(bufferSize, 0.0);
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allocated_ = true;
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}
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template<class Scalar>
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void MICPContainer<Scalar>::
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assign(const unsigned globalDofIdx,
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const Scalar microbialConcentration,
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const Scalar oxygenConcentration,
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const Scalar ureaConcentration,
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const Scalar biofilmConcentration,
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const Scalar calciteConcentration)
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{
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cMicrobes_[globalDofIdx] = microbialConcentration;
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cOxygen_[globalDofIdx] = oxygenConcentration;
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cUrea_[globalDofIdx] = ureaConcentration;
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cBiofilm_[globalDofIdx] = biofilmConcentration;
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cCalcite_[globalDofIdx] = calciteConcentration;
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}
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template<class Scalar>
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void MICPContainer<Scalar>::
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outputRestart(data::Solution& sol)
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{
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if (!this->allocated_) {
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return;
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}
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using DataEntry =
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std::tuple<std::string, UnitSystem::measure, std::vector<Scalar>&>;
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auto solutionVectors = std::array {
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DataEntry{"BIOFILM", UnitSystem::measure::identity, cBiofilm_},
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DataEntry{"CALCITE", UnitSystem::measure::identity, cCalcite_},
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DataEntry{"MICROBES", UnitSystem::measure::density, cMicrobes_},
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DataEntry{"OXYGEN", UnitSystem::measure::density, cOxygen_},
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DataEntry{"UREA", UnitSystem::measure::density, cUrea_},
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};
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std::for_each(solutionVectors.begin(), solutionVectors.end(),
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[&sol](auto& entry)
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{
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if (!std::get<2>(entry).empty()) {
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sol.insert(std::get<std::string>(entry),
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std::get<UnitSystem::measure>(entry),
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std::move(std::get<2>(entry)),
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data::TargetType::RESTART_OPM_EXTENDED);
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}
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});
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allocated_ = false;
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}
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template<class Scalar>
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void MICPContainer<Scalar>::
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readRestart(const unsigned globalDofIdx,
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const unsigned elemIdx,
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const data::Solution& sol)
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{
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if (this->allocated_) {
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return;
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}
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auto assign = [elemIdx, globalDofIdx, &sol](const std::string& name,
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ScalarBuffer& data)
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{
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if (!data.empty() && sol.has(name)) {
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data[elemIdx] = sol.data<double>(name)[globalDofIdx];
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}
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};
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const auto fields = std::array{
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std::pair{"BIOFILM", &cBiofilm_},
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std::pair{"CALCITE", &cCalcite_},
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std::pair{"MICROBES", &cMicrobes_},
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std::pair{"OXYGEN", &cOxygen_},
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std::pair{"UREA", &cUrea_},
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};
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std::for_each(fields.begin(), fields.end(),
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[&assign](const auto& p)
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{ assign(p.first, *p.second); });
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}
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template class MICPContainer<double>;
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#if FLOW_INSTANTIATE_FLOAT
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template class MICPContainer<float>;
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#endif
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} // namespace Opm
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